Wall clock time and date at job start Sat Apr 11 2020 05:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53009 * 109.47103 * 2 1 4 4 S 1.81398 * 109.46993 * 119.99578 * 2 1 3 5 5 O 1.42098 * 108.57685 * 70.51612 * 4 2 1 6 6 O 1.42094 * 108.58222 * 299.48807 * 4 2 1 7 7 C 1.81407 * 101.92125 * 185.00192 * 4 2 1 8 8 C 1.53002 * 109.46924 * 180.02562 * 7 4 2 9 9 N 1.46503 * 109.46820 * 179.97438 * 8 7 4 10 10 C 1.34777 * 120.00051 * 179.97438 * 9 8 7 11 11 O 1.21283 * 119.99353 * 0.02562 * 10 9 8 12 12 C 1.50692 * 119.99931 * 180.02562 * 10 9 8 13 13 C 1.50703 * 109.47000 * 180.02562 * 12 10 9 14 14 C 1.37645 * 120.13007 * 265.30719 * 13 12 10 15 15 C 1.38606 * 120.24649 * 180.32491 * 14 13 12 16 16 C 1.38653 * 120.50471 * 359.65965 * 15 14 13 17 17 C 1.37600 * 120.24898 * 0.02562 * 16 15 14 18 18 C 1.40696 * 120.12867 * 84.99790 * 13 12 10 19 19 C 1.41400 * 120.24530 * 359.97438 * 18 13 12 20 20 H 1.08003 * 119.99719 * 25.87056 * 19 18 13 21 21 C 1.39942 * 120.00205 * 205.88123 * 19 18 13 22 22 N 1.30821 * 119.99968 * 16.29869 * 21 19 18 23 23 Si 1.86803 * 120.00009 * 196.30797 * 21 19 18 24 24 H 1.48496 * 109.47194 * 265.18190 * 23 21 19 25 25 H 1.48505 * 109.46937 * 25.18007 * 23 21 19 26 26 H 1.48498 * 109.47234 * 145.18150 * 23 21 19 27 27 H 1.08997 * 109.47091 * 300.00185 * 1 2 3 28 28 H 1.09004 * 109.46826 * 60.00082 * 1 2 3 29 29 H 1.09001 * 109.47043 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47532 * 239.99973 * 2 1 3 31 31 H 1.08993 * 109.47013 * 179.97438 * 3 2 1 32 32 H 1.08995 * 109.46733 * 300.00035 * 3 2 1 33 33 H 1.09001 * 109.46948 * 59.99616 * 3 2 1 34 34 H 1.08994 * 109.47157 * 60.00161 * 7 4 2 35 35 H 1.08997 * 109.47113 * 300.00057 * 7 4 2 36 36 H 1.08994 * 109.47287 * 59.99977 * 8 7 4 37 37 H 1.08997 * 109.47057 * 299.99828 * 8 7 4 38 38 H 0.97002 * 120.00149 * 0.02562 * 9 8 7 39 39 H 1.09000 * 109.47297 * 60.00731 * 12 10 9 40 40 H 1.08997 * 109.47185 * 300.00030 * 12 10 9 41 41 H 1.07994 * 119.87429 * 0.02562 * 14 13 12 42 42 H 1.08002 * 119.74758 * 179.69746 * 15 14 13 43 43 H 1.07998 * 119.87893 * 180.02562 * 16 15 14 44 44 H 1.07997 * 120.12664 * 180.02562 * 17 16 15 45 45 H 0.97002 * 120.00001 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 16 2.1346 -0.8550 1.4812 5 8 1.8620 -2.2430 1.3457 6 8 1.6605 -0.1636 2.6284 7 6 3.9266 -0.6030 1.3541 8 6 4.6210 -1.2699 2.5432 9 7 6.0682 -1.0669 2.4403 10 6 6.8881 -1.5698 3.3843 11 8 6.4278 -2.1909 4.3188 12 6 8.3767 -1.3605 3.2787 13 6 9.0607 -2.0175 4.4499 14 6 9.3633 -1.2832 5.5741 15 6 9.9985 -1.8834 6.6500 16 6 10.3298 -3.2292 6.6103 17 6 10.0312 -3.9842 5.4993 18 6 9.3866 -3.3853 4.4009 19 6 9.0743 -4.1513 3.2542 20 1 8.9846 -3.6702 2.2914 21 6 8.8813 -5.5328 3.3667 22 7 8.6719 -6.0705 4.5408 23 14 8.9229 -6.6091 1.8405 24 1 7.5398 -6.8106 1.3390 25 1 9.7388 -5.9477 0.7905 26 1 9.5234 -7.9245 2.1787 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 3.1300 1.4426 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 4.1445 0.4650 1.3579 35 1 4.2908 -1.0448 0.4266 36 1 4.4031 -2.3378 2.5390 37 1 4.2569 -0.8285 3.4709 38 1 6.4363 -0.5698 1.6930 39 1 8.5946 -0.2925 3.2826 40 1 8.7408 -1.8022 2.3512 41 1 9.1093 -0.2344 5.6161 42 1 10.2365 -1.2985 7.5261 43 1 10.8242 -3.6867 7.4545 44 1 10.2898 -5.0323 5.4707 45 1 8.5384 -7.0281 4.6189 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000811555374.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:12 Heat of formation + Delta-G solvation = -126.761548 kcal Electronic energy + Delta-G solvation = -26993.892316 eV Core-core repulsion = 23101.945857 eV Total energy + Delta-G solvation = -3891.946459 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.77351 -39.14883 -38.12732 -37.15705 -36.39437 -35.95622 -35.46829 -33.56452 -31.98361 -31.31533 -28.66407 -28.10138 -26.86874 -24.74722 -23.22892 -22.82215 -22.20534 -21.04635 -19.71584 -19.08065 -18.24279 -17.93701 -17.34616 -17.32008 -16.83035 -16.69581 -16.48857 -16.11435 -15.77029 -15.37517 -15.31339 -14.74365 -14.62320 -14.36849 -14.25140 -14.13093 -13.58579 -13.38205 -13.27975 -13.24623 -13.20250 -13.07128 -13.00942 -12.91741 -12.73741 -12.56534 -12.46559 -12.32320 -12.29760 -12.10050 -11.99200 -11.31286 -11.18926 -11.15885 -11.00808 -10.72287 -10.11323 -9.21616 -9.16701 -8.56626 -6.25917 -1.10334 1.00558 1.13826 1.35781 1.48621 1.54722 1.73493 1.85799 2.20787 2.26288 2.70182 2.82795 2.98964 3.39257 3.60005 3.63114 3.76246 3.84327 4.14464 4.22049 4.26358 4.40588 4.47520 4.49058 4.63500 4.63966 4.65387 4.69753 4.75504 4.80733 4.83484 4.90475 5.03532 5.12405 5.25893 5.28677 5.37438 5.43647 5.56307 5.80190 6.05035 6.15180 6.22876 6.44321 6.68581 6.77228 6.99961 7.13596 7.47893 8.41119 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013670 B = 0.002871 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.788161 B = 9749.920557 C =11018.509465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.539 4.539 3 C -0.159 4.159 4 S 2.401 3.599 5 O -0.987 6.987 6 O -0.976 6.976 7 C -0.614 4.614 8 C 0.122 3.878 9 N -0.715 5.715 10 C 0.510 3.490 11 O -0.575 6.575 12 C -0.065 4.065 13 C -0.190 4.190 14 C -0.091 4.091 15 C -0.246 4.246 16 C -0.117 4.117 17 C -0.197 4.197 18 C 0.096 3.904 19 C -0.484 4.484 20 H 0.087 0.913 21 C 0.027 3.973 22 N -0.834 5.834 23 Si 0.975 3.025 24 H -0.271 1.271 25 H -0.244 1.244 26 H -0.271 1.271 27 H 0.068 0.932 28 H 0.109 0.891 29 H 0.065 0.935 30 H 0.171 0.829 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.070 0.930 34 H 0.183 0.817 35 H 0.177 0.823 36 H 0.050 0.950 37 H 0.063 0.937 38 H 0.423 0.577 39 H 0.121 0.879 40 H 0.105 0.895 41 H 0.119 0.881 42 H 0.114 0.886 43 H 0.103 0.897 44 H 0.095 0.905 45 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.985 16.348 -17.235 26.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.652 4.652 3 C -0.216 4.216 4 S 2.588 3.412 5 O -0.984 6.984 6 O -0.973 6.973 7 C -0.743 4.743 8 C -0.003 4.003 9 N -0.372 5.372 10 C 0.298 3.702 11 O -0.453 6.453 12 C -0.104 4.104 13 C -0.191 4.191 14 C -0.109 4.109 15 C -0.265 4.265 16 C -0.135 4.135 17 C -0.217 4.217 18 C 0.093 3.907 19 C -0.514 4.514 20 H 0.105 0.895 21 C -0.186 4.186 22 N -0.460 5.460 23 Si 0.795 3.205 24 H -0.197 1.197 25 H -0.167 1.167 26 H -0.195 1.195 27 H 0.087 0.913 28 H 0.127 0.873 29 H 0.084 0.916 30 H 0.189 0.811 31 H 0.116 0.884 32 H 0.119 0.881 33 H 0.089 0.911 34 H 0.200 0.800 35 H 0.195 0.805 36 H 0.069 0.931 37 H 0.081 0.919 38 H 0.261 0.739 39 H 0.139 0.861 40 H 0.123 0.877 41 H 0.137 0.863 42 H 0.132 0.868 43 H 0.121 0.879 44 H 0.113 0.887 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -11.851 15.212 -15.764 24.907 hybrid contribution 0.396 -0.748 -0.608 1.042 sum -11.455 14.464 -16.372 24.667 Atomic orbital electron populations 1.21828 0.90100 1.03949 1.05740 1.29794 1.06805 1.10444 1.18194 1.21988 1.03482 0.90440 1.05735 1.08489 0.78622 0.75239 0.78805 1.93549 1.84011 1.33261 1.87594 1.93531 1.79205 1.75719 1.48883 1.30542 1.22986 1.13577 1.07210 1.20808 0.82464 0.99867 0.97187 1.45712 1.05177 1.58255 1.28030 1.21396 0.90270 0.77213 0.81289 1.90718 1.78341 1.40990 1.35222 1.20309 0.88584 1.02500 0.99049 1.19519 1.07521 0.94831 0.97274 1.20755 0.98125 0.98746 0.93243 1.20721 1.10586 0.95066 1.00149 1.20948 1.00473 0.94856 0.97271 1.21310 1.04693 0.99297 0.96410 1.17772 0.88065 0.91819 0.93008 1.19753 1.43507 0.92669 0.95461 0.89536 1.26818 0.91574 1.00139 1.00090 1.69946 1.35163 1.13666 1.27265 0.85313 0.79179 0.77567 0.78395 1.19681 1.16672 1.19549 0.91293 0.87276 0.91614 0.81102 0.88361 0.88107 0.91094 0.79981 0.80500 0.93143 0.91862 0.73897 0.86085 0.87669 0.86311 0.86785 0.87906 0.88705 0.90803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.47 9.19 71.98 0.66 -0.81 16 2 C -0.54 -3.99 3.35 30.60 0.10 -3.89 16 3 C -0.16 -0.52 8.90 71.99 0.64 0.12 16 4 S 2.40 43.85 4.26 -56.49 -0.24 43.61 16 5 O -0.99 -27.92 18.10 -127.37 -2.30 -30.23 16 6 O -0.98 -25.66 18.06 -127.37 -2.30 -27.96 16 7 C -0.61 -7.75 5.31 71.98 0.38 -7.37 16 8 C 0.12 3.28 5.68 86.38 0.49 3.77 16 9 N -0.71 -19.06 5.56 -463.07 -2.57 -21.63 16 10 C 0.51 20.06 7.82 87.65 0.69 20.74 16 11 O -0.58 -30.39 16.03 -3.04 -0.05 -30.44 16 12 C -0.07 -2.35 5.35 29.10 0.16 -2.20 16 13 C -0.19 -9.06 4.43 -19.40 -0.09 -9.15 16 14 C -0.09 -4.09 9.66 22.22 0.21 -3.87 16 15 C -0.25 -11.40 10.05 22.46 0.23 -11.17 16 16 C -0.12 -5.91 10.02 22.22 0.22 -5.69 16 17 C -0.20 -11.15 8.68 22.73 0.20 -10.95 16 18 C 0.10 5.28 5.56 -21.29 -0.12 5.16 16 19 C -0.48 -26.08 8.46 23.46 0.20 -25.88 16 20 H 0.09 4.24 6.36 -2.91 -0.02 4.22 16 21 C 0.03 1.45 5.16 85.26 0.44 1.89 16 22 N -0.83 -47.55 10.98 21.83 0.24 -47.31 16 23 Si 0.97 39.73 29.59 68.60 2.03 41.76 16 24 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 25 H -0.24 -9.14 7.11 99.48 0.71 -8.43 16 26 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 27 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.17 0.24 8.14 -2.39 -0.02 0.22 16 31 H 0.10 -0.17 6.39 -2.39 -0.02 -0.19 16 32 H 0.10 0.04 8.14 -2.39 -0.02 0.02 16 33 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 34 H 0.18 0.75 6.77 -2.39 -0.02 0.73 16 35 H 0.18 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.42 6.69 8.47 -92.71 -0.79 5.91 16 39 H 0.12 3.23 8.06 -2.39 -0.02 3.21 16 40 H 0.11 3.54 6.48 -2.39 -0.02 3.53 16 41 H 0.12 4.44 8.06 -2.91 -0.02 4.42 16 42 H 0.11 4.52 8.06 -2.91 -0.02 4.50 16 43 H 0.10 4.64 8.06 -2.91 -0.02 4.62 16 44 H 0.09 5.62 6.23 -2.91 -0.02 5.60 16 45 H 0.28 14.73 8.30 -92.71 -0.77 13.96 16 Total: -1.00 -92.18 386.04 -0.57 -92.75 By element: Atomic # 1 Polarization: 28.54 SS G_CDS: 0.22 Total: 28.76 kcal Atomic # 6 Polarization: -53.71 SS G_CDS: 4.41 Total: -49.30 kcal Atomic # 7 Polarization: -66.61 SS G_CDS: -2.33 Total: -68.94 kcal Atomic # 8 Polarization: -83.98 SS G_CDS: -4.65 Total: -88.63 kcal Atomic # 14 Polarization: 39.73 SS G_CDS: 2.03 Total: 41.76 kcal Atomic # 16 Polarization: 43.85 SS G_CDS: -0.24 Total: 43.61 kcal Total: -92.18 -0.57 -92.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811555374.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.013 kcal (2) G-P(sol) polarization free energy of solvation -92.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds