Wall clock time and date at job start Sat Apr 11 2020 05:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45209 * 109.46715 * 2 1 4 4 C 1.34228 * 116.99706 * 180.02562 * 3 2 1 5 5 O 1.20829 * 120.00375 * 0.02562 * 4 3 2 6 6 C 1.50700 * 120.00069 * 180.02562 * 4 3 2 7 7 H 1.09001 * 109.47132 * 300.00338 * 6 4 3 8 8 C 1.53002 * 109.47194 * 59.99967 * 6 4 3 9 9 C 1.52995 * 109.47121 * 185.49140 * 8 6 4 10 10 C 1.50698 * 109.47321 * 179.97438 * 6 4 3 11 11 O 1.21292 * 119.99998 * 338.89795 * 10 6 4 12 12 N 1.34782 * 119.99773 * 158.89149 * 10 6 4 13 13 C 1.40091 * 119.99635 * 185.72927 * 12 10 6 14 14 C 1.38708 * 120.07895 * 331.81881 * 13 12 10 15 15 C 1.38187 * 120.01907 * 179.72613 * 14 13 12 16 16 C 1.38549 * 120.17908 * 0.27579 * 15 14 13 17 17 F 1.35095 * 119.92289 * 179.97438 * 16 15 14 18 18 C 1.38347 * 120.15207 * 0.02562 * 16 15 14 19 19 C 1.38742 * 119.97708 * 359.97438 * 18 16 15 20 20 O 1.35774 * 120.08629 * 180.02562 * 19 18 16 21 21 C 1.34806 * 116.99833 * 355.26427 * 20 19 18 22 22 H 1.07994 * 120.00266 * 5.02980 * 21 20 19 23 23 C 1.38637 * 119.99828 * 185.03589 * 21 20 19 24 24 N 1.31573 * 120.00211 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00226 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47144 * 59.99750 * 25 23 21 27 27 H 1.48502 * 109.47416 * 179.97438 * 25 23 21 28 28 H 1.48498 * 109.46956 * 299.99922 * 25 23 21 29 29 H 1.08994 * 109.47898 * 59.99634 * 1 2 3 30 30 H 1.09005 * 109.47014 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47114 * 299.99260 * 1 2 3 32 32 H 1.09006 * 109.47114 * 240.00740 * 2 1 3 33 33 H 1.08994 * 109.47898 * 120.00366 * 2 1 3 34 34 H 1.09003 * 109.47144 * 305.49506 * 8 6 4 35 35 H 1.09003 * 109.46875 * 65.48895 * 8 6 4 36 36 H 1.08998 * 109.47457 * 62.00126 * 9 8 6 37 37 H 1.09006 * 109.46778 * 181.99597 * 9 8 6 38 38 H 1.08998 * 109.47129 * 301.99466 * 9 8 6 39 39 H 0.96994 * 120.00043 * 5.73715 * 12 10 6 40 40 H 1.08004 * 119.98643 * 0.02562 * 14 13 12 41 41 H 1.08002 * 119.90735 * 180.29924 * 15 14 13 42 42 H 1.07992 * 120.00975 * 179.97438 * 18 16 15 43 43 H 0.96993 * 120.00304 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3691 0.0000 4 6 3.3446 1.5450 -0.0005 5 8 4.0807 0.5868 -0.0015 6 6 3.9206 2.9376 0.0000 7 1 3.5841 3.4703 -0.8895 8 6 3.4496 3.6838 1.2499 9 6 3.9205 5.1380 1.1834 10 6 5.4255 2.8588 -0.0001 11 8 5.9799 1.8482 0.3776 12 7 6.1553 3.9111 -0.4201 13 6 7.5470 3.7974 -0.5343 14 6 8.2409 2.9113 0.2763 15 6 9.6129 2.7960 0.1587 16 6 10.3002 3.5680 -0.7639 17 9 11.6416 3.4515 -0.8742 18 6 9.6161 4.4587 -1.5718 19 6 8.2385 4.5796 -1.4591 20 8 7.5648 5.4527 -2.2511 21 6 8.3024 6.2426 -3.0569 22 1 9.3725 6.1081 -3.1126 23 6 7.6873 7.2276 -3.8140 24 7 6.3835 7.3912 -3.7466 25 14 8.7093 8.3227 -4.9301 26 1 9.4140 7.4859 -5.9343 27 1 7.8205 9.2873 -5.6263 28 1 9.7061 9.0650 -4.1173 29 1 -0.3635 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8901 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 2.3611 3.6563 1.3010 35 1 3.8671 3.2068 2.1367 36 1 3.4747 5.6250 0.3162 37 1 3.6155 5.6604 2.0902 38 1 5.0067 5.1645 1.0967 39 1 5.7171 4.7472 -0.6431 40 1 7.7081 2.3077 0.9963 41 1 10.1509 2.1019 0.7874 42 1 10.1541 5.0597 -2.2898 43 1 5.9531 8.0801 -4.2765 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840396590.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:57 Heat of formation + Delta-G solvation = -166.849824 kcal Electronic energy + Delta-G solvation = -29671.325020 eV Core-core repulsion = 25211.427027 eV Total energy + Delta-G solvation = -4459.897993 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.136 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.25727 -41.02135 -39.89925 -38.64491 -36.67344 -36.19912 -35.04058 -33.92860 -32.43351 -31.85563 -29.52221 -28.98726 -28.10347 -25.54704 -23.87961 -22.99955 -22.37873 -21.88138 -21.11469 -19.81416 -18.40380 -17.97630 -17.84230 -17.03505 -16.72869 -16.46386 -16.00791 -15.57926 -15.24496 -14.99290 -14.71962 -14.43457 -14.31009 -14.13298 -13.80544 -13.68079 -13.54654 -13.26380 -13.24377 -12.96188 -12.71674 -12.38413 -12.24951 -12.19266 -11.99211 -11.74024 -11.68853 -11.48596 -11.29472 -11.12744 -10.94034 -10.74851 -10.64050 -10.58257 -10.28933 -9.81219 -9.76148 -9.19191 -8.97998 -7.90075 -7.12239 -6.63213 -4.20967 1.77689 2.10718 2.21578 2.30799 2.91545 3.06172 3.06592 3.09009 3.45325 3.83076 4.31363 4.35803 4.63690 4.69851 4.73650 4.77962 4.84254 4.92915 5.01005 5.06637 5.09811 5.18451 5.27207 5.48228 5.54132 5.57926 5.59680 5.72448 5.73703 5.83318 5.92807 6.01136 6.16797 6.19898 6.35496 6.55349 6.71409 6.89082 6.94738 7.01774 7.16162 7.63315 7.76137 7.79572 7.83765 8.44469 8.82857 9.42854 10.53704 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010584 B = 0.003429 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2644.812260 B = 8163.986128 C = 9946.664257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.062 3.938 3 O -0.359 6.359 4 C 0.468 3.532 5 O -0.465 6.465 6 C -0.102 4.102 7 H 0.133 0.867 8 C -0.107 4.107 9 C -0.168 4.168 10 C 0.516 3.484 11 O -0.497 6.497 12 N -0.644 5.644 13 C 0.059 3.941 14 C -0.059 4.059 15 C -0.227 4.227 16 C 0.129 3.871 17 F -0.151 7.151 18 C -0.258 4.258 19 C 0.157 3.843 20 O -0.169 6.169 21 C -0.393 4.393 22 H 0.094 0.906 23 C 0.044 3.956 24 N -0.860 5.860 25 Si 0.942 3.058 26 H -0.269 1.269 27 H -0.277 1.277 28 H -0.268 1.268 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.417 0.583 40 H 0.152 0.848 41 H 0.123 0.877 42 H 0.143 0.857 43 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.067 -5.964 7.875 14.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.012 4.012 3 O -0.277 6.277 4 C 0.308 3.692 5 O -0.348 6.348 6 C -0.124 4.124 7 H 0.151 0.849 8 C -0.145 4.145 9 C -0.225 4.225 10 C 0.301 3.699 11 O -0.371 6.371 12 N -0.289 5.289 13 C -0.035 4.035 14 C -0.080 4.080 15 C -0.248 4.248 16 C 0.109 3.891 17 F -0.130 7.130 18 C -0.279 4.279 19 C 0.101 3.899 20 O -0.072 6.072 21 C -0.469 4.469 22 H 0.111 0.889 23 C -0.161 4.161 24 N -0.494 5.494 25 Si 0.766 3.234 26 H -0.194 1.194 27 H -0.202 1.202 28 H -0.193 1.193 29 H 0.086 0.914 30 H 0.097 0.903 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.107 0.893 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.255 0.745 40 H 0.170 0.830 41 H 0.141 0.859 42 H 0.161 0.839 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.896 -6.824 7.971 14.424 hybrid contribution 0.652 0.820 -0.940 1.408 sum -9.244 -6.003 7.031 13.074 Atomic orbital electron populations 1.21801 0.92618 1.02892 1.03545 1.23014 0.95229 0.80226 1.02723 1.86462 1.24250 1.32356 1.84612 1.22801 0.80774 0.91671 0.73995 1.90802 1.59766 1.42104 1.42154 1.21112 0.93915 0.92764 1.04649 0.84920 1.21454 1.02464 0.96057 0.94536 1.22016 1.02618 0.94634 1.03232 1.19732 0.87937 0.83264 0.78990 1.90717 1.71537 1.30073 1.44733 1.43212 1.05433 1.15087 1.65216 1.16913 0.82046 1.04337 1.00214 1.20968 0.92645 0.96902 0.97452 1.20530 0.94491 1.05633 1.04125 1.17488 0.76279 0.97689 0.97662 1.91410 1.30909 1.95237 1.95466 1.20838 0.94238 1.06112 1.06705 1.18756 0.89895 0.91788 0.89444 1.83906 1.34193 1.43121 1.45976 1.21298 0.92211 1.12718 1.20649 0.88861 1.25264 0.96306 0.96813 0.97699 1.69986 1.08438 1.32069 1.38864 0.85754 0.78911 0.79228 0.79493 1.19387 1.20168 1.19347 0.91409 0.90313 0.91476 0.91207 0.91213 0.89297 0.90756 0.91282 0.91417 0.91579 0.74490 0.83042 0.85920 0.83924 0.91747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 10.29 37.15 0.38 -0.63 16 2 C 0.06 0.61 6.19 37.15 0.23 0.84 16 3 O -0.36 -4.33 10.02 -39.25 -0.39 -4.72 16 4 C 0.47 6.86 7.22 36.01 0.26 7.11 16 5 O -0.47 -8.56 14.17 -26.69 -0.38 -8.94 16 6 C -0.10 -1.35 2.64 -92.92 -0.25 -1.60 16 7 H 0.13 1.52 8.14 -51.93 -0.42 1.10 16 8 C -0.11 -1.11 5.35 -26.73 -0.14 -1.26 16 9 C -0.17 -1.71 9.24 37.16 0.34 -1.37 16 10 C 0.52 8.85 6.39 -10.98 -0.07 8.78 16 11 O -0.50 -10.06 11.57 -18.45 -0.21 -10.28 16 12 N -0.64 -11.56 4.29 -9.72 -0.04 -11.61 16 13 C 0.06 1.22 6.44 -83.45 -0.54 0.68 16 14 C -0.06 -1.16 8.78 -39.43 -0.35 -1.51 16 15 C -0.23 -4.30 10.02 -39.49 -0.40 -4.69 16 16 C 0.13 2.59 7.29 -39.43 -0.29 2.30 16 17 F -0.15 -2.92 17.26 2.25 0.04 -2.88 16 18 C -0.26 -5.61 9.14 -39.36 -0.36 -5.97 16 19 C 0.16 3.58 6.67 -38.94 -0.26 3.32 16 20 O -0.17 -4.31 9.21 0.04 0.00 -4.31 16 21 C -0.39 -10.17 9.49 30.88 0.29 -9.88 16 22 H 0.09 2.28 5.20 -52.49 -0.27 2.00 16 23 C 0.04 1.13 5.49 -17.52 -0.10 1.03 16 24 N -0.86 -22.81 13.67 55.48 0.76 -22.05 16 25 Si 0.94 19.36 29.55 -169.99 -5.02 14.34 16 26 H -0.27 -5.45 7.11 56.52 0.40 -5.04 16 27 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 28 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.71 8.13 -51.93 -0.42 0.28 16 33 H 0.07 0.68 8.13 -51.93 -0.42 0.26 16 34 H 0.09 0.76 7.98 -51.93 -0.41 0.35 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.79 5.75 -51.93 -0.30 0.50 16 39 H 0.42 7.10 6.92 -40.82 -0.28 6.82 16 40 H 0.15 2.91 5.66 -52.48 -0.30 2.62 16 41 H 0.12 2.02 8.06 -52.49 -0.42 1.60 16 42 H 0.14 3.09 5.63 -52.49 -0.30 2.79 16 43 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 LS Contribution 368.48 15.07 5.55 5.55 Total: -1.00 -31.30 368.48 -6.15 -37.45 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -5.22 Total: 10.28 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: -1.23 Total: -2.84 kcal Atomic # 7 Polarization: -34.38 SS G_CDS: 0.72 Total: -33.66 kcal Atomic # 8 Polarization: -27.27 SS G_CDS: -0.98 Total: -28.25 kcal Atomic # 9 Polarization: -2.92 SS G_CDS: 0.04 Total: -2.88 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.02 Total: 14.34 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.30 -6.15 -37.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840396590.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.397 kcal (2) G-P(sol) polarization free energy of solvation -31.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds