Wall clock time and date at job start Sat Apr 11 2020 05:39:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46957 * 2 1 4 4 H 1.08992 * 109.51580 * 54.89774 * 3 2 1 5 5 C 1.53290 * 109.50921 * 175.00425 * 3 2 1 6 6 N 1.47155 * 108.38249 * 172.22634 * 5 3 2 7 7 S 1.65601 * 120.98633 * 129.44111 * 6 5 3 8 8 O 1.42104 * 106.39836 * 23.56034 * 7 6 5 9 9 O 1.42097 * 106.40474 * 156.47647 * 7 6 5 10 10 C 1.76197 * 107.21605 * 270.02505 * 7 6 5 11 11 C 1.38239 * 119.99769 * 269.72092 * 10 7 6 12 12 C 1.38234 * 120.00142 * 179.79287 * 11 10 7 13 13 C 1.38234 * 119.99594 * 0.43706 * 12 11 10 14 14 C 1.50707 * 119.99411 * 179.83717 * 13 12 11 15 15 C 1.50702 * 109.47087 * 269.97678 * 14 13 12 16 16 H 1.07996 * 119.99679 * 0.02562 * 15 14 13 17 17 C 1.37874 * 119.99952 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00137 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00195 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.46875 * 89.99542 * 19 17 15 21 21 H 1.48489 * 109.47275 * 210.00111 * 19 17 15 22 22 H 1.48503 * 109.46900 * 330.00117 * 19 17 15 23 23 C 1.38230 * 120.00319 * 359.81492 * 13 12 11 24 24 C 1.38229 * 120.00484 * 89.99597 * 10 7 6 25 25 C 1.47156 * 118.03501 * 309.45919 * 6 5 3 26 26 C 1.53298 * 108.38111 * 50.53645 * 25 6 5 27 27 O 1.42955 * 109.22490 * 307.69799 * 26 25 6 28 28 H 1.09005 * 109.47190 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47193 * 299.99595 * 1 2 3 30 30 H 1.08995 * 109.47567 * 60.00042 * 1 2 3 31 31 H 1.09000 * 109.46740 * 240.00218 * 2 1 3 32 32 H 1.08995 * 109.47045 * 120.00016 * 2 1 3 33 33 H 1.08999 * 109.68779 * 52.50366 * 5 3 2 34 34 H 1.08998 * 109.68048 * 291.94372 * 5 3 2 35 35 H 1.08008 * 119.99506 * 359.97438 * 11 10 7 36 36 H 1.08000 * 119.99834 * 180.28273 * 12 11 10 37 37 H 1.08995 * 109.47257 * 29.98497 * 14 13 12 38 38 H 1.09009 * 109.46686 * 149.98254 * 14 13 12 39 39 H 0.96997 * 120.00133 * 180.02562 * 18 17 15 40 40 H 1.08003 * 120.00093 * 179.97438 * 23 13 12 41 41 H 1.08002 * 120.00084 * 359.97438 * 24 10 7 42 42 H 1.09001 * 109.68077 * 170.26083 * 25 6 5 43 43 H 1.08998 * 109.68021 * 290.81811 * 25 6 5 44 44 H 1.08997 * 109.51381 * 67.62438 * 26 25 6 45 45 H 1.09000 * 109.51078 * 187.77491 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6044 1.9827 0.8405 5 6 3.5677 1.4454 0.1258 6 7 4.0464 2.8239 -0.0645 7 16 5.0843 3.5233 1.0199 8 8 5.7565 2.4574 1.6767 9 8 5.7636 4.5548 0.3172 10 6 4.0998 4.3203 2.2446 11 6 3.7217 5.6393 2.0767 12 6 2.9456 6.2633 3.0354 13 6 2.5553 5.5711 4.1665 14 6 1.7123 6.2526 5.2135 15 6 2.6091 6.9082 6.2318 16 1 3.6821 6.8387 6.1307 17 6 2.0598 7.5967 7.2925 18 7 0.7531 7.6809 7.4159 19 14 3.1713 8.4101 8.5544 20 1 3.4698 9.8009 8.1278 21 1 2.4895 8.4323 9.8733 22 1 4.4384 7.6436 8.6650 23 6 2.9377 4.2537 4.3370 24 6 3.7102 3.6284 3.3761 25 6 3.5752 3.5626 -1.2467 26 6 2.0471 3.4565 -1.3057 27 8 1.6673 2.0808 -1.2238 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 4.0002 0.7980 -0.6370 34 1 3.8552 1.0904 1.1155 35 1 4.0302 6.1813 1.1949 36 1 2.6464 7.2924 2.9020 37 1 1.0862 7.0088 4.7401 38 1 1.0801 5.5148 5.7076 39 1 0.3666 8.1656 8.1619 40 1 2.6331 3.7130 5.2209 41 1 4.0089 2.5991 3.5093 42 1 3.8677 4.6096 -1.1660 43 1 4.0084 3.1283 -2.1477 44 1 1.6115 4.0048 -0.4704 45 1 1.6889 3.8777 -2.2450 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884913474.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:19 Heat of formation + Delta-G solvation = -105.389078 kcal Electronic energy + Delta-G solvation = -27889.609080 eV Core-core repulsion = 23998.589401 eV Total energy + Delta-G solvation = -3891.019679 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.71297 -38.85720 -37.30282 -35.86072 -35.16242 -34.27098 -33.71901 -31.60253 -30.65039 -30.39745 -27.48149 -27.32781 -24.59921 -23.77777 -22.48874 -22.39108 -21.20846 -20.80034 -19.06757 -18.05758 -17.45180 -16.96045 -16.48086 -16.22765 -15.61888 -15.19381 -15.14520 -15.04142 -14.46910 -14.40444 -14.36041 -13.96564 -13.76603 -13.50631 -13.18719 -12.90539 -12.59971 -12.36138 -12.25505 -12.21595 -12.08185 -11.84663 -11.76450 -11.75608 -11.52906 -11.34277 -11.23052 -11.07986 -10.95397 -10.69670 -10.59590 -10.53152 -10.34619 -9.78728 -9.67867 -9.05749 -8.65234 -8.57043 -8.43099 -6.20181 -4.25447 0.34949 1.26496 1.73295 2.82766 3.22212 3.28900 3.33136 3.45144 3.70946 4.03016 4.15012 4.34270 4.45359 4.48616 4.64435 4.80473 4.83088 4.97603 5.02222 5.10311 5.14071 5.16568 5.17429 5.24706 5.33080 5.45312 5.52958 5.66145 5.66644 5.71496 5.72386 5.78318 5.85503 5.90201 6.07904 6.18851 6.21105 6.26754 6.46511 6.78042 6.85468 6.90873 7.24515 7.37941 7.54276 7.74745 8.09571 8.79299 9.39778 10.89822 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014646 B = 0.003119 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.375229 B = 8973.952588 C = 9862.266631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.116 4.116 3 C 0.075 3.925 4 H 0.068 0.932 5 C 0.093 3.907 6 N -1.003 6.003 7 S 2.694 3.306 8 O -0.960 6.960 9 O -0.960 6.960 10 C -0.705 4.705 11 C -0.024 4.024 12 C -0.145 4.145 13 C 0.027 3.973 14 C 0.039 3.961 15 C -0.518 4.518 16 H 0.059 0.941 17 C 0.061 3.939 18 N -0.891 5.891 19 Si 0.899 3.101 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.272 1.272 23 C -0.144 4.144 24 C -0.024 4.024 25 C 0.088 3.912 26 C 0.047 3.953 27 O -0.372 6.372 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.099 0.901 35 H 0.129 0.871 36 H 0.129 0.871 37 H 0.035 0.965 38 H 0.035 0.965 39 H 0.264 0.736 40 H 0.129 0.871 41 H 0.128 0.872 42 H 0.099 0.901 43 H 0.080 0.920 44 H 0.060 0.940 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.934 -12.933 -17.883 22.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.154 4.154 3 C 0.016 3.984 4 H 0.086 0.914 5 C -0.032 4.032 6 N -0.841 5.841 7 S 2.789 3.211 8 O -0.951 6.951 9 O -0.951 6.951 10 C -0.795 4.795 11 C -0.043 4.043 12 C -0.163 4.163 13 C 0.027 3.973 14 C 0.003 3.997 15 C -0.556 4.556 16 H 0.077 0.923 17 C -0.141 4.141 18 N -0.529 5.529 19 Si 0.726 3.274 20 H -0.204 1.204 21 H -0.210 1.210 22 H -0.197 1.197 23 C -0.163 4.163 24 C -0.043 4.043 25 C -0.038 4.038 26 C -0.031 4.031 27 O -0.291 6.291 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.117 0.883 35 H 0.146 0.854 36 H 0.147 0.853 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.074 0.926 40 H 0.147 0.853 41 H 0.146 0.854 42 H 0.118 0.882 43 H 0.099 0.901 44 H 0.078 0.922 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 1.634 -12.995 -17.972 22.238 hybrid contribution 0.065 1.011 1.406 1.733 sum 1.699 -11.983 -16.567 20.517 Atomic orbital electron populations 1.21707 0.94875 1.01626 1.02508 1.21526 0.97116 0.93669 1.03064 1.22568 0.93143 0.94837 0.87883 0.91372 1.22144 0.95125 0.82137 1.03797 1.57946 1.66560 1.22549 1.37043 1.01785 0.73362 0.73146 0.72836 1.93551 1.70892 1.55312 1.75314 1.93550 1.70591 1.58055 1.72875 1.30378 1.25114 1.07054 1.16919 1.20759 0.93118 0.92014 0.98459 1.21250 1.00030 1.00528 0.94535 1.21129 0.90465 0.92542 0.93168 1.18545 0.94197 0.95751 0.91251 1.20962 0.92902 1.33686 1.08088 0.92291 1.25001 0.95162 0.96071 0.97870 1.69943 1.09972 1.41813 1.31207 0.86475 0.80605 0.79825 0.80490 1.20427 1.20999 1.19688 1.21248 1.00085 0.95632 0.99362 1.20754 0.93074 0.98790 0.91713 1.22118 0.95782 0.97634 0.88231 1.22969 0.93519 0.83465 1.03152 1.87932 1.79698 1.23664 1.37781 0.92667 0.92672 0.91939 0.90866 0.90160 0.90105 0.88289 0.85363 0.85300 0.94708 0.94697 0.92598 0.85299 0.85387 0.88230 0.90122 0.92214 0.87635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.81 37.16 0.36 -0.78 16 2 C -0.12 -0.86 5.64 -26.73 -0.15 -1.02 16 3 C 0.07 0.69 2.78 -26.58 -0.07 0.61 16 4 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 5 C 0.09 0.89 5.86 -3.53 -0.02 0.87 16 6 N -1.00 -10.93 3.34 -113.06 -0.38 -11.31 16 7 S 2.69 37.82 5.70 -107.50 -0.61 37.21 16 8 O -0.96 -15.38 16.09 -57.17 -0.92 -16.30 16 9 O -0.96 -15.33 16.08 -57.17 -0.92 -16.25 16 10 C -0.71 -10.93 5.97 -39.58 -0.24 -11.17 16 11 C -0.02 -0.38 9.52 -39.58 -0.38 -0.76 16 12 C -0.14 -2.62 9.70 -39.58 -0.38 -3.01 16 13 C 0.03 0.55 5.07 -104.62 -0.53 0.02 16 14 C 0.04 0.95 5.10 -29.03 -0.15 0.80 16 15 C -0.52 -13.94 9.09 -34.44 -0.31 -14.25 16 16 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 17 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 18 N -0.89 -25.32 13.29 55.43 0.74 -24.58 16 19 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 23 C -0.14 -2.62 9.70 -39.59 -0.38 -3.01 16 24 C -0.02 -0.38 9.52 -39.59 -0.38 -0.76 16 25 C 0.09 0.79 6.57 -3.53 -0.02 0.77 16 26 C 0.05 0.40 6.98 37.31 0.26 0.66 16 27 O -0.37 -3.70 9.93 -35.23 -0.35 -4.05 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.52 7.83 -51.93 -0.41 0.12 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.10 0.90 7.25 -51.93 -0.38 0.52 16 35 H 0.13 1.73 7.61 -52.48 -0.40 1.33 16 36 H 0.13 2.22 8.06 -52.49 -0.42 1.79 16 37 H 0.03 0.87 8.08 -51.93 -0.42 0.45 16 38 H 0.03 0.88 8.09 -51.92 -0.42 0.46 16 39 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 40 H 0.13 2.22 8.06 -52.48 -0.42 1.80 16 41 H 0.13 1.74 7.62 -52.49 -0.40 1.34 16 42 H 0.10 0.85 7.25 -51.93 -0.38 0.47 16 43 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 44 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 381.24 15.07 5.75 5.75 Total: -1.00 -32.45 381.24 -11.20 -43.65 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -6.99 Total: -0.64 kcal Atomic # 6 Polarization: -26.94 SS G_CDS: -2.49 Total: -29.43 kcal Atomic # 7 Polarization: -36.25 SS G_CDS: 0.36 Total: -35.89 kcal Atomic # 8 Polarization: -34.41 SS G_CDS: -2.19 Total: -36.59 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: 37.82 SS G_CDS: -0.61 Total: 37.21 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.45 -11.20 -43.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884913474.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.743 kcal (2) G-P(sol) polarization free energy of solvation -32.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds