Wall clock time and date at job start Sat Apr 11 2020 05:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.46990 * 2 1 4 4 H 1.09004 * 109.71076 * 296.30136 * 3 2 1 5 5 C 1.53712 * 109.74889 * 57.07126 * 3 2 1 6 6 O 1.42955 * 109.14987 * 172.16701 * 5 3 2 7 7 C 1.42958 * 114.16631 * 297.28534 * 6 5 3 8 8 C 1.53298 * 109.22225 * 62.58507 * 7 6 5 9 9 N 1.47152 * 108.38067 * 307.69373 * 8 7 6 10 10 S 1.65596 * 120.98462 * 230.51253 * 9 8 7 11 11 O 1.42107 * 106.40115 * 212.95869 * 10 9 8 12 12 O 1.42097 * 106.40211 * 345.87412 * 10 9 8 13 13 C 1.76197 * 107.21888 * 99.41848 * 10 9 8 14 14 C 1.38234 * 120.00083 * 277.41563 * 13 10 9 15 15 C 1.38228 * 120.00168 * 179.76437 * 14 13 10 16 16 C 1.38236 * 119.99995 * 0.51244 * 15 14 13 17 17 C 1.50707 * 120.00224 * 179.72237 * 16 15 14 18 18 C 1.50695 * 109.46835 * 270.02035 * 17 16 15 19 19 H 1.07996 * 120.00309 * 359.97438 * 18 17 16 20 20 C 1.37884 * 119.99677 * 179.97438 * 18 17 16 21 21 N 1.31509 * 120.00041 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 119.99880 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47254 * 0.02562 * 22 20 18 24 24 H 1.48509 * 109.47077 * 120.00156 * 22 20 18 25 25 H 1.48499 * 109.47440 * 240.00067 * 22 20 18 26 26 C 1.38236 * 120.00088 * 359.74402 * 16 15 14 27 27 C 1.38234 * 119.99574 * 359.97438 * 26 16 15 28 28 H 1.09005 * 109.47340 * 294.66442 * 1 2 3 29 29 H 1.08994 * 109.47633 * 54.67065 * 1 2 3 30 30 H 1.09007 * 109.46712 * 174.67041 * 1 2 3 31 31 H 1.09000 * 109.47435 * 239.99513 * 2 1 3 32 32 H 1.09003 * 109.47020 * 119.99666 * 2 1 3 33 33 H 1.08999 * 109.65894 * 52.19971 * 5 3 2 34 34 H 1.09005 * 109.48594 * 292.02694 * 5 3 2 35 35 H 1.09003 * 109.51753 * 302.65795 * 7 6 5 36 36 H 1.09000 * 109.51487 * 182.50541 * 7 6 5 37 37 H 1.09000 * 109.68259 * 187.97521 * 8 7 6 38 38 H 1.08997 * 109.68104 * 67.41550 * 8 7 6 39 39 H 1.08000 * 119.99838 * 0.02562 * 14 13 10 40 40 H 1.08000 * 120.00651 * 180.23235 * 15 14 13 41 41 H 1.09001 * 109.47099 * 30.02194 * 17 16 15 42 42 H 1.09004 * 109.46824 * 150.02141 * 17 16 15 43 43 H 0.96996 * 120.00383 * 180.02562 * 21 20 18 44 44 H 1.07999 * 120.00509 * 179.97438 * 26 16 15 45 45 H 1.08011 * 119.99951 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.7338 1.9407 -0.9199 5 6 1.4716 2.1943 1.2143 6 8 2.0952 3.4774 1.3054 7 6 3.5070 3.4277 1.5249 8 6 4.1793 2.7384 0.3321 9 7 3.5079 1.4492 0.1024 10 16 4.3790 0.0485 -0.0436 11 8 3.6674 -0.7729 -0.9593 12 8 5.7324 0.4359 -0.2369 13 6 4.3136 -0.7712 1.5147 14 6 5.1819 -0.4041 2.5257 15 6 5.1274 -1.0438 3.7499 16 6 4.2117 -2.0579 3.9596 17 6 4.1564 -2.7597 5.2921 18 6 5.0867 -3.9450 5.2745 19 1 5.6603 -4.1682 4.3871 20 6 5.2056 -4.7447 6.3915 21 7 4.5068 -4.4732 7.4720 22 14 6.3583 -6.2144 6.3694 23 1 7.0235 -6.3020 5.0447 24 1 7.3860 -6.0535 7.4293 25 1 5.5821 -7.4560 6.6171 26 6 3.3469 -2.4287 2.9468 27 6 3.3976 -1.7850 1.7246 28 1 -0.3634 0.4289 0.9339 29 1 -0.3634 0.5942 -0.8383 30 1 -0.3633 -1.0233 -0.0955 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6715 1.6270 2.1233 34 1 0.3957 2.3203 1.0930 35 1 3.7144 2.8649 2.4350 36 1 3.8956 4.4411 1.6262 37 1 5.2334 2.5692 0.5522 38 1 4.0848 3.3647 -0.5549 39 1 5.9000 0.3855 2.3606 40 1 5.8032 -0.7544 4.5411 41 1 4.4616 -2.0698 6.0790 42 1 3.1382 -3.0996 5.4818 43 1 4.5907 -5.0355 8.2579 44 1 2.6318 -3.2213 3.1104 45 1 2.7222 -2.0749 0.9331 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885016757.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:44 Heat of formation + Delta-G solvation = -88.764108 kcal Electronic energy + Delta-G solvation = -28551.012570 eV Core-core repulsion = 24660.713803 eV Total energy + Delta-G solvation = -3890.298766 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.76194 -38.89100 -37.57146 -35.95976 -35.58867 -33.87531 -33.66337 -31.61975 -30.68307 -29.95203 -27.50005 -26.92531 -25.24811 -23.77929 -22.60649 -22.13644 -21.45798 -20.85835 -18.97446 -18.12543 -17.10642 -16.76731 -16.48558 -16.29900 -15.56229 -15.23658 -15.18451 -15.08794 -14.99852 -14.46324 -14.40039 -13.93725 -13.65222 -13.26046 -13.17587 -12.96274 -12.85761 -12.36022 -12.27867 -12.12760 -12.07954 -11.76981 -11.72973 -11.59076 -11.53628 -11.48436 -11.05063 -10.97989 -10.82651 -10.65867 -10.50092 -10.49663 -10.10319 -9.75655 -9.67507 -9.03833 -8.63839 -8.57570 -8.41826 -6.20611 -4.25747 0.36752 1.25758 1.71882 2.81063 3.20761 3.28993 3.34070 3.56818 3.67449 4.00688 4.23711 4.32264 4.35395 4.50493 4.71522 4.79409 4.88163 5.01115 5.09191 5.11205 5.14147 5.16889 5.19797 5.26386 5.35864 5.47818 5.50242 5.62863 5.66166 5.71758 5.82620 5.84867 5.91759 5.95954 6.18094 6.25079 6.26421 6.32285 6.46712 6.77369 6.85039 6.86165 7.24186 7.37535 7.53961 7.74589 8.09316 8.79337 9.39560 10.89465 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016640 B = 0.003213 C = 0.003167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.310508 B = 8711.350831 C = 8840.167571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.202 4.202 3 C 0.130 3.870 4 H 0.087 0.913 5 C 0.050 3.950 6 O -0.378 6.378 7 C 0.046 3.954 8 C 0.085 3.915 9 N -1.001 6.001 10 S 2.696 3.304 11 O -0.958 6.958 12 O -0.964 6.964 13 C -0.704 4.704 14 C -0.022 4.022 15 C -0.144 4.144 16 C 0.027 3.973 17 C 0.039 3.961 18 C -0.518 4.518 19 H 0.059 0.941 20 C 0.061 3.939 21 N -0.891 5.891 22 Si 0.898 3.102 23 H -0.271 1.271 24 H -0.282 1.282 25 H -0.282 1.282 26 C -0.144 4.144 27 C -0.028 4.028 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.132 0.868 32 H 0.080 0.920 33 H 0.060 0.940 34 H 0.105 0.895 35 H 0.059 0.941 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.080 0.920 39 H 0.125 0.875 40 H 0.129 0.871 41 H 0.035 0.965 42 H 0.035 0.965 43 H 0.264 0.736 44 H 0.129 0.871 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.317 15.072 -13.592 21.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.240 4.240 3 C 0.025 3.975 4 H 0.105 0.895 5 C -0.028 4.028 6 O -0.296 6.296 7 C -0.033 4.033 8 C -0.040 4.040 9 N -0.839 5.839 10 S 2.791 3.209 11 O -0.948 6.948 12 O -0.954 6.954 13 C -0.794 4.794 14 C -0.042 4.042 15 C -0.163 4.163 16 C 0.027 3.973 17 C 0.002 3.998 18 C -0.556 4.556 19 H 0.078 0.922 20 C -0.141 4.141 21 N -0.529 5.529 22 Si 0.725 3.275 23 H -0.196 1.196 24 H -0.208 1.208 25 H -0.208 1.208 26 C -0.163 4.163 27 C -0.048 4.048 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.149 0.851 32 H 0.098 0.902 33 H 0.079 0.921 34 H 0.123 0.877 35 H 0.078 0.922 36 H 0.123 0.877 37 H 0.121 0.879 38 H 0.098 0.902 39 H 0.143 0.857 40 H 0.147 0.853 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.073 0.927 44 H 0.147 0.853 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -5.997 14.919 -14.203 21.454 hybrid contribution 0.645 -1.223 1.005 1.709 sum -5.352 13.697 -13.197 19.759 Atomic orbital electron populations 1.21673 0.94033 1.02610 1.01812 1.23089 0.98594 0.95008 1.07284 1.21783 0.78248 0.97815 0.99704 0.89523 1.23197 0.97842 0.84679 0.97127 1.87938 1.20405 1.28088 1.93211 1.22989 0.81718 1.01868 0.96678 1.22154 0.97672 0.84451 0.99749 1.57979 1.15652 1.21486 1.88781 1.01717 0.72432 0.72202 0.74500 1.93463 1.72531 1.67573 1.61281 1.93536 1.33660 1.82504 1.85701 1.30365 1.10589 1.15811 1.22607 1.20699 0.94315 0.97055 0.92112 1.21238 1.00147 0.97782 0.97162 1.21130 0.88831 0.89535 0.97803 1.18546 0.98750 0.95169 0.87291 1.21004 1.24801 1.10329 0.99459 0.92227 1.25000 0.95901 0.97909 0.95287 1.69949 1.40643 1.39055 1.03279 0.86429 0.80590 0.82151 0.78285 1.19562 1.20774 1.20762 1.21258 1.01198 1.00847 0.92981 1.20872 0.94393 0.92200 0.97291 0.92587 0.92337 0.91749 0.85061 0.90185 0.92135 0.87688 0.92234 0.87661 0.87883 0.90154 0.85673 0.85330 0.94721 0.94698 0.92651 0.85279 0.84662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 9.33 37.16 0.35 -0.80 16 2 C -0.20 -2.08 3.80 -26.73 -0.10 -2.18 16 3 C 0.13 1.29 3.24 -67.20 -0.22 1.07 16 4 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 5 C 0.05 0.47 5.61 37.53 0.21 0.68 16 6 O -0.38 -3.93 10.74 -35.23 -0.38 -4.31 16 7 C 0.05 0.40 6.98 37.31 0.26 0.66 16 8 C 0.09 0.79 6.62 -3.53 -0.02 0.76 16 9 N -1.00 -11.12 3.33 -105.80 -0.35 -11.47 16 10 S 2.70 37.80 5.16 -107.50 -0.55 37.25 16 11 O -0.96 -14.57 13.16 -57.17 -0.75 -15.32 16 12 O -0.96 -15.56 16.03 -57.17 -0.92 -16.48 16 13 C -0.70 -10.87 5.64 -39.58 -0.22 -11.09 16 14 C -0.02 -0.35 9.52 -39.59 -0.38 -0.73 16 15 C -0.14 -2.61 9.70 -39.59 -0.38 -3.00 16 16 C 0.03 0.55 5.07 -104.62 -0.53 0.02 16 17 C 0.04 0.94 5.10 -29.03 -0.15 0.80 16 18 C -0.52 -13.89 9.09 -34.44 -0.31 -14.21 16 19 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 20 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 21 N -0.89 -25.28 13.29 55.43 0.74 -24.54 16 22 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 23 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 C -0.14 -2.59 9.70 -39.58 -0.38 -2.98 16 27 C -0.03 -0.45 7.58 -39.58 -0.30 -0.75 16 28 H 0.06 0.40 6.90 -51.93 -0.36 0.04 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.13 1.55 5.31 -52.00 -0.28 1.27 16 32 H 0.08 0.90 3.94 -51.93 -0.20 0.69 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.11 0.80 7.01 -51.93 -0.36 0.43 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.10 0.91 7.00 -51.93 -0.36 0.55 16 38 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.13 1.68 7.80 -52.49 -0.41 1.27 16 40 H 0.13 2.21 8.06 -52.49 -0.42 1.79 16 41 H 0.03 0.87 8.09 -51.93 -0.42 0.45 16 42 H 0.03 0.87 8.09 -51.93 -0.42 0.46 16 43 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 44 H 0.13 2.20 8.06 -52.49 -0.42 1.78 16 45 H 0.14 1.84 6.14 -52.48 -0.32 1.52 16 LS Contribution 364.47 15.07 5.49 5.49 Total: -1.00 -31.84 364.47 -10.51 -42.35 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -6.48 Total: 1.28 kcal Atomic # 6 Polarization: -27.88 SS G_CDS: -2.28 Total: -30.16 kcal Atomic # 7 Polarization: -36.40 SS G_CDS: 0.38 Total: -36.02 kcal Atomic # 8 Polarization: -34.07 SS G_CDS: -2.05 Total: -36.11 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 16 Polarization: 37.80 SS G_CDS: -0.55 Total: 37.25 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.84 -10.51 -42.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885016757.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.412 kcal (2) G-P(sol) polarization free energy of solvation -31.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds