Wall clock time and date at job start Sat Apr 11 2020 05:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42908 * 109.46807 * 2 1 4 4 C 1.52997 * 109.47582 * 239.99766 * 2 1 3 5 5 N 1.46505 * 109.46707 * 60.00045 * 4 2 1 6 6 S 1.65604 * 119.99753 * 164.99922 * 5 4 2 7 7 O 1.42101 * 106.40130 * 178.53840 * 6 5 4 8 8 O 1.42097 * 106.40206 * 311.46034 * 6 5 4 9 9 C 1.76200 * 107.21680 * 64.99816 * 6 5 4 10 10 C 1.38236 * 120.00223 * 269.72624 * 9 6 5 11 11 C 1.38233 * 119.99957 * 179.76770 * 10 9 6 12 12 C 1.38240 * 119.99968 * 0.50281 * 11 10 9 13 13 C 1.50701 * 119.99839 * 179.72232 * 12 11 10 14 14 C 1.50698 * 109.47645 * 270.02658 * 13 12 11 15 15 H 1.08004 * 119.99567 * 359.97438 * 14 13 12 16 16 C 1.37869 * 120.00298 * 180.02562 * 14 13 12 17 17 N 1.31515 * 120.00188 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00312 * 179.97438 * 16 14 13 19 19 H 1.48508 * 109.46960 * 59.99850 * 18 16 14 20 20 H 1.48494 * 109.47614 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47054 * 300.00382 * 18 16 14 22 22 C 1.38230 * 120.00152 * 359.75387 * 12 11 10 23 23 C 1.38239 * 119.99995 * 359.97438 * 22 12 11 24 24 C 1.53003 * 109.47107 * 119.99644 * 2 1 3 25 25 C 1.53001 * 117.51964 * 231.28841 * 24 2 1 26 26 C 1.52999 * 60.00190 * 107.47982 * 25 24 2 27 27 H 1.08996 * 109.47501 * 299.99752 * 1 2 3 28 28 H 1.09004 * 109.47169 * 60.00511 * 1 2 3 29 29 H 1.09005 * 109.46926 * 179.97438 * 1 2 3 30 30 H 0.96700 * 113.99867 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47179 * 179.97438 * 4 2 1 32 32 H 1.08996 * 109.47327 * 300.00426 * 4 2 1 33 33 H 0.96997 * 120.00544 * 344.99726 * 5 4 2 34 34 H 1.07991 * 119.99988 * 359.97438 * 10 9 6 35 35 H 1.08002 * 120.00400 * 180.23045 * 11 10 9 36 36 H 1.09007 * 109.47207 * 30.03003 * 13 12 11 37 37 H 1.09005 * 109.46932 * 150.02229 * 13 12 11 38 38 H 0.96996 * 120.00620 * 180.02562 * 17 16 14 39 39 H 1.07998 * 120.00351 * 179.97438 * 22 12 11 40 40 H 1.08001 * 119.99981 * 179.97438 * 23 22 12 41 41 H 1.09002 * 115.54973 * 85.58625 * 24 2 1 42 42 H 1.09001 * 117.49733 * 214.97413 * 25 24 2 43 43 H 1.08995 * 117.49577 * 359.97438 * 25 24 2 44 44 H 1.09004 * 117.50150 * 252.51496 * 26 25 24 45 45 H 1.09004 * 117.49681 * 107.48417 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 1.5517 -0.0306 -2.4454 6 16 2.2320 -0.3495 -3.9212 7 8 1.5260 0.4411 -4.8676 8 8 3.6392 -0.2724 -3.7395 9 6 1.8718 -2.0301 -4.3093 10 6 2.7455 -3.0305 -3.9262 11 6 2.4605 -4.3494 -4.2265 12 6 1.3070 -4.6669 -4.9190 13 6 0.9994 -6.1042 -5.2518 14 6 1.5981 -6.4489 -6.5912 15 1 2.1461 -5.7018 -7.1461 16 6 1.4453 -7.7177 -7.1085 17 7 0.7776 -8.6274 -6.4330 18 14 2.1867 -8.1449 -8.7690 19 1 3.6584 -7.9530 -8.7181 20 1 1.8838 -9.5611 -9.0969 21 1 1.6080 -7.2601 -9.8118 22 6 0.4359 -3.6660 -5.3068 23 6 0.7181 -2.3476 -5.0016 24 6 2.0400 -0.7212 1.2493 25 6 3.0757 0.0040 2.1109 26 6 1.6373 -0.1482 2.6097 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 2.9702 1.4238 0.0004 31 1 3.1301 -0.7208 -1.2493 32 1 1.6767 -1.7489 -1.2492 33 1 0.8300 0.6134 -2.3730 34 1 3.6489 -2.7820 -3.3893 35 1 3.1412 -5.1314 -3.9239 36 1 1.4241 -6.7534 -4.4861 37 1 -0.0808 -6.2453 -5.2895 38 1 0.6704 -9.5201 -6.7968 39 1 -0.4650 -3.9140 -5.8482 40 1 0.0378 -1.5656 -5.3049 41 1 2.1253 -1.8046 1.1648 42 1 3.8425 -0.6023 2.5932 43 1 3.3942 0.9949 1.7876 44 1 1.0093 0.7428 2.6145 45 1 1.4577 -0.8547 3.4201 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885027388.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:07 Heat of formation + Delta-G solvation = -87.108714 kcal Electronic energy + Delta-G solvation = -27166.944316 eV Core-core repulsion = 23276.717333 eV Total energy + Delta-G solvation = -3890.226983 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.94 seconds Orbital eigenvalues (eV) -39.84395 -38.82566 -37.14832 -35.93704 -35.76306 -34.60978 -33.69635 -31.57889 -30.99110 -30.60229 -27.45238 -26.87523 -23.74600 -23.20817 -22.66037 -22.35724 -20.93517 -20.40870 -19.40471 -17.95509 -17.68156 -17.25377 -16.50699 -16.42802 -15.63718 -15.43472 -15.08610 -14.88597 -14.51502 -14.38983 -14.27145 -13.83863 -13.24782 -13.17239 -13.12559 -12.83953 -12.71101 -12.33948 -12.25308 -12.08810 -12.01320 -11.93365 -11.76571 -11.72059 -11.50595 -11.39046 -10.98748 -10.91977 -10.91624 -10.56371 -10.50184 -10.49965 -10.24347 -9.81986 -9.72579 -9.56096 -8.61628 -8.55343 -8.41177 -6.18860 -4.24077 0.49396 1.30320 1.76798 3.03710 3.24863 3.29099 3.32550 3.34324 3.75257 3.82545 4.09348 4.13966 4.33323 4.36355 4.48252 4.50027 4.65979 4.76048 4.93175 5.13409 5.16961 5.20949 5.21855 5.28206 5.32513 5.44389 5.48398 5.52851 5.67907 5.69835 5.74587 5.79596 5.82203 5.88455 5.88919 6.22366 6.30534 6.48300 6.80670 6.82099 6.88650 7.26690 7.28045 7.40569 7.56535 7.75985 8.11221 8.80461 9.41006 10.91141 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016980 B = 0.002623 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.593925 B =10670.439968 C =11509.734955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.158 3.842 3 O -0.552 6.552 4 C 0.095 3.905 5 N -1.113 6.113 6 S 2.699 3.301 7 O -0.965 6.965 8 O -0.966 6.966 9 C -0.704 4.704 10 C -0.026 4.026 11 C -0.145 4.145 12 C 0.027 3.973 13 C 0.040 3.960 14 C -0.519 4.519 15 H 0.058 0.942 16 C 0.061 3.939 17 N -0.892 5.892 18 Si 0.899 3.101 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.275 1.275 22 C -0.146 4.146 23 C -0.021 4.021 24 C -0.187 4.187 25 C -0.177 4.177 26 C -0.165 4.165 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.076 0.924 30 H 0.378 0.622 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.418 0.582 34 H 0.129 0.871 35 H 0.128 0.872 36 H 0.034 0.966 37 H 0.035 0.965 38 H 0.265 0.735 39 H 0.129 0.871 40 H 0.130 0.870 41 H 0.115 0.885 42 H 0.095 0.905 43 H 0.100 0.900 44 H 0.098 0.902 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.750 16.777 17.167 24.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.116 3.884 3 O -0.359 6.359 4 C -0.032 4.032 5 N -0.873 5.873 6 S 2.792 3.208 7 O -0.956 6.956 8 O -0.956 6.956 9 C -0.794 4.794 10 C -0.045 4.045 11 C -0.164 4.164 12 C 0.026 3.974 13 C 0.003 3.997 14 C -0.557 4.557 15 H 0.077 0.923 16 C -0.141 4.141 17 N -0.530 5.530 18 Si 0.726 3.274 19 H -0.200 1.200 20 H -0.211 1.211 21 H -0.200 1.200 22 C -0.164 4.164 23 C -0.041 4.041 24 C -0.207 4.207 25 C -0.214 4.214 26 C -0.202 4.202 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.095 0.905 30 H 0.227 0.773 31 H 0.102 0.898 32 H 0.096 0.904 33 H 0.254 0.746 34 H 0.147 0.853 35 H 0.146 0.854 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.074 0.926 39 H 0.147 0.853 40 H 0.148 0.852 41 H 0.133 0.867 42 H 0.114 0.886 43 H 0.118 0.882 44 H 0.116 0.884 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.680 17.187 16.637 23.930 hybrid contribution 0.401 -1.119 -0.827 1.448 sum 1.081 16.068 15.810 22.567 Atomic orbital electron populations 1.21745 0.91803 1.03013 1.02985 1.20791 0.95155 0.81816 0.90626 1.86556 1.27124 1.25533 1.96717 1.21932 1.00012 0.96460 0.84840 1.55476 1.53325 1.55860 1.22682 1.01517 0.73442 0.73888 0.71955 1.93569 1.74459 1.68209 1.59347 1.93548 1.29815 1.86689 1.85525 1.30332 1.06902 1.23154 1.18991 1.20775 0.96157 0.92598 0.94978 1.21244 0.98186 0.95819 1.01189 1.21121 0.90852 0.98923 0.86469 1.18533 0.98306 0.85288 0.97569 1.20929 1.35122 0.96884 1.02721 0.92343 1.24996 0.95069 0.96193 0.97837 1.69932 1.40562 1.04176 1.38329 0.86536 0.79761 0.77410 0.83667 1.20032 1.21091 1.20021 1.21253 1.01185 0.92045 1.01965 1.20779 0.93537 0.97236 0.92535 1.23022 1.05295 1.00124 0.92218 1.22994 0.92736 1.02189 1.03490 1.22890 0.98030 1.03157 0.96171 0.91478 0.91629 0.90537 0.77312 0.89779 0.90394 0.74610 0.85327 0.85361 0.94731 0.94729 0.92553 0.85342 0.85245 0.86716 0.88614 0.88194 0.88385 0.88799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 8.51 37.16 0.32 -0.67 16 2 C 0.16 1.16 0.91 -90.62 -0.08 1.08 16 3 O -0.55 -4.34 12.00 -35.23 -0.42 -4.76 16 4 C 0.09 0.80 5.31 -4.04 -0.02 0.77 16 5 N -1.11 -10.92 5.72 -10.61 -0.06 -10.98 16 6 S 2.70 36.61 5.74 -107.50 -0.62 36.00 16 7 O -0.97 -15.59 17.28 -57.17 -0.99 -16.58 16 8 O -0.97 -15.17 16.75 -57.17 -0.96 -16.13 16 9 C -0.70 -10.80 5.95 -39.58 -0.24 -11.04 16 10 C -0.03 -0.40 9.52 -39.58 -0.38 -0.78 16 11 C -0.15 -2.63 9.70 -39.58 -0.38 -3.01 16 12 C 0.03 0.54 5.07 -104.62 -0.53 0.01 16 13 C 0.04 0.96 5.10 -29.03 -0.15 0.81 16 14 C -0.52 -13.98 9.09 -34.44 -0.31 -14.30 16 15 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 16 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 17 N -0.89 -25.39 13.29 55.43 0.74 -24.66 16 18 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 19 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 20 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 22 C -0.15 -2.67 9.70 -39.58 -0.38 -3.05 16 23 C -0.02 -0.34 9.52 -39.58 -0.38 -0.72 16 24 C -0.19 -1.21 5.15 -90.61 -0.47 -1.68 16 25 C -0.18 -1.03 9.74 -26.73 -0.26 -1.29 16 26 C -0.17 -1.02 9.67 -26.73 -0.26 -1.28 16 27 H 0.07 0.46 7.29 -51.93 -0.38 0.08 16 28 H 0.06 0.47 6.60 -51.93 -0.34 0.13 16 29 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.38 2.14 7.56 45.56 0.34 2.49 16 31 H 0.08 0.69 7.75 -51.93 -0.40 0.29 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.42 3.59 7.08 -34.47 -0.24 3.35 16 34 H 0.13 1.71 7.61 -52.49 -0.40 1.31 16 35 H 0.13 2.20 8.06 -52.49 -0.42 1.77 16 36 H 0.03 0.87 8.09 -51.93 -0.42 0.45 16 37 H 0.03 0.87 8.09 -51.93 -0.42 0.45 16 38 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 39 H 0.13 2.24 8.06 -52.49 -0.42 1.82 16 40 H 0.13 1.80 7.62 -52.49 -0.40 1.40 16 41 H 0.11 0.71 8.11 -51.93 -0.42 0.29 16 42 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.10 0.53 6.38 -51.93 -0.33 0.20 16 44 H 0.10 0.64 7.61 -51.93 -0.40 0.25 16 45 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 384.57 15.07 5.80 5.80 Total: -1.00 -33.23 384.57 -11.04 -44.27 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -5.89 Total: 4.58 kcal Atomic # 6 Polarization: -29.94 SS G_CDS: -3.62 Total: -33.56 kcal Atomic # 7 Polarization: -36.31 SS G_CDS: 0.68 Total: -35.64 kcal Atomic # 8 Polarization: -35.11 SS G_CDS: -2.37 Total: -37.48 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: 36.61 SS G_CDS: -0.62 Total: 36.00 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.23 -11.04 -44.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885027388.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.837 kcal (2) G-P(sol) polarization free energy of solvation -33.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds