Wall clock time and date at job start Sat Apr 11 2020 05:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.55952 * 2 1 4 4 O 1.42957 * 109.51546 * 120.13259 * 2 1 3 5 5 C 1.42962 * 114.17016 * 182.50051 * 4 2 1 6 6 C 1.53292 * 109.22202 * 297.42201 * 5 4 2 7 7 N 1.47145 * 108.38654 * 52.29732 * 6 5 4 8 8 S 1.65608 * 120.97837 * 129.44318 * 7 6 5 9 9 O 1.42100 * 106.40059 * 203.54176 * 8 7 6 10 10 O 1.42096 * 106.40050 * 336.46209 * 8 7 6 11 11 C 1.76202 * 107.21643 * 90.00232 * 8 7 6 12 12 C 1.38236 * 120.00007 * 269.72251 * 11 8 7 13 13 C 1.38228 * 120.00406 * 179.81088 * 12 11 8 14 14 C 1.38242 * 119.99509 * 0.39965 * 13 12 11 15 15 C 1.50703 * 119.99816 * 179.83063 * 14 13 12 16 16 C 1.50702 * 109.47237 * 270.02307 * 15 14 13 17 17 H 1.07994 * 120.00115 * 0.02562 * 16 15 14 18 18 C 1.37878 * 119.99669 * 180.02562 * 16 15 14 19 19 N 1.31519 * 119.99478 * 180.02562 * 18 16 15 20 20 Si 1.86803 * 120.00224 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.46701 * 90.00146 * 20 18 16 22 22 H 1.48498 * 109.46865 * 210.00035 * 20 18 16 23 23 H 1.48496 * 109.47067 * 330.00234 * 20 18 16 24 24 C 1.38230 * 119.99913 * 359.85621 * 14 13 12 25 25 C 1.38227 * 120.00414 * 359.95307 * 24 14 13 26 26 C 1.47147 * 118.03962 * 309.71775 * 7 6 5 27 27 H 1.08998 * 109.68567 * 170.01066 * 26 7 6 28 28 C 1.53002 * 109.67909 * 290.55966 * 26 7 6 29 29 H 1.09001 * 109.46700 * 299.87370 * 1 2 3 30 30 H 1.09007 * 109.46762 * 59.86746 * 1 2 3 31 31 H 1.08990 * 109.47146 * 179.87018 * 1 2 3 32 32 H 1.08995 * 109.51166 * 177.49574 * 5 4 2 33 33 H 1.08996 * 109.55158 * 57.36931 * 5 4 2 34 34 H 1.09002 * 109.67736 * 292.57314 * 6 5 4 35 35 H 1.09002 * 109.71199 * 172.04466 * 6 5 4 36 36 H 1.08004 * 119.99309 * 0.02562 * 12 11 8 37 37 H 1.07993 * 120.00545 * 180.22739 * 13 12 11 38 38 H 1.09000 * 109.46973 * 30.02602 * 15 14 13 39 39 H 1.09001 * 109.47104 * 150.02079 * 15 14 13 40 40 H 0.96998 * 119.99459 * 180.02562 * 19 18 16 41 41 H 1.08003 * 119.99575 * 179.97438 * 24 14 13 42 42 H 1.08004 * 120.00318 * 179.97438 * 25 24 14 43 43 H 1.08996 * 109.47287 * 60.00209 * 28 26 7 44 44 H 1.09010 * 109.47041 * 179.97438 * 28 26 7 45 45 H 1.08993 * 109.47445 * 299.99959 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8950 1.0271 0.0000 4 8 2.0076 -0.6764 1.1654 5 6 3.4313 -0.6857 1.2946 6 6 4.0406 -1.4459 0.1111 7 7 3.5011 -0.8762 -1.1337 8 16 4.5065 -0.4181 -2.3674 9 8 3.7946 0.5493 -3.1268 10 8 5.7745 -0.1643 -1.7784 11 6 4.7163 -1.8181 -3.4164 12 6 5.7504 -2.7060 -3.1855 13 6 5.9127 -3.8065 -4.0060 14 6 5.0459 -4.0147 -5.0626 15 6 5.2251 -5.2124 -5.9595 16 6 6.1348 -4.8504 -7.1052 17 1 6.5427 -3.8531 -7.1765 18 6 6.4462 -5.7927 -8.0623 19 7 7.2406 -5.4769 -9.0619 20 14 5.7412 -7.5182 -7.9386 21 1 4.4446 -7.5759 -8.6603 22 1 6.6898 -8.4852 -8.5470 23 1 5.5288 -7.8648 -6.5104 24 6 4.0150 -3.1240 -5.2967 25 6 3.8503 -2.0256 -4.4737 26 6 2.0424 -0.7199 -1.2476 27 1 1.8043 -0.1313 -2.1336 28 6 1.3832 -2.0968 -1.3504 29 1 -0.3633 0.5119 0.8911 30 1 -0.3633 0.5159 -0.8889 31 1 -0.3633 -1.0276 -0.0023 32 1 3.7091 -1.1789 2.2260 33 1 3.8038 0.3387 1.2999 34 1 3.7756 -2.5011 0.1771 35 1 5.1253 -1.3384 0.1242 36 1 6.4293 -2.5417 -2.3618 37 1 6.7183 -4.5022 -3.8235 38 1 5.6662 -6.0302 -5.3897 39 1 4.2556 -5.5227 -6.3494 40 1 7.4594 -6.1397 -9.7354 41 1 3.3381 -3.2864 -6.1224 42 1 3.0452 -1.3294 -4.6569 43 1 1.6158 -2.6785 -0.4585 44 1 0.3029 -1.9771 -1.4342 45 1 1.7609 -2.6157 -2.2313 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885061243.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:30 Heat of formation + Delta-G solvation = -94.766395 kcal Electronic energy + Delta-G solvation = -28055.100102 eV Core-core repulsion = 24164.541057 eV Total energy + Delta-G solvation = -3890.559045 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.03273 -38.92084 -37.33721 -35.87984 -35.37287 -33.87424 -33.70897 -31.76669 -30.68065 -29.13992 -28.57976 -27.99437 -24.82514 -23.57196 -23.43420 -22.44380 -20.78208 -20.34727 -18.95461 -18.14918 -17.49151 -16.98379 -16.93378 -16.23524 -15.73758 -15.41255 -15.14557 -15.03490 -14.51006 -14.32438 -14.18993 -13.85342 -13.51015 -13.23790 -13.19346 -12.80779 -12.70414 -12.62705 -12.42669 -12.18002 -12.11655 -12.06329 -11.98620 -11.92347 -11.80947 -11.59544 -11.25781 -11.07522 -10.95301 -10.66999 -10.54933 -10.43926 -10.25365 -10.09634 -9.57259 -9.08817 -8.72652 -8.66893 -8.46491 -6.20647 -4.22350 0.33142 1.22695 1.70089 2.80196 3.18479 3.27085 3.27757 3.39643 3.67539 3.99677 4.13373 4.28625 4.36661 4.47189 4.64789 4.76233 4.81000 4.97533 5.01125 5.04746 5.13099 5.14539 5.17696 5.19343 5.29590 5.42089 5.50612 5.54385 5.58639 5.60705 5.70700 5.72562 5.79218 5.96729 6.05770 6.12633 6.20693 6.25735 6.42864 6.67052 6.67477 6.78760 6.84927 7.26054 7.27247 7.51280 8.32330 8.82891 9.37518 10.91890 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.020863 B = 0.002878 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.768329 B = 9726.914902 C =10102.119319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.083 3.917 3 H 0.063 0.937 4 O -0.373 6.373 5 C 0.053 3.947 6 C 0.082 3.918 7 N -0.998 5.998 8 S 2.693 3.307 9 O -0.960 6.960 10 O -0.961 6.961 11 C -0.699 4.699 12 C -0.022 4.022 13 C -0.142 4.142 14 C 0.032 3.968 15 C 0.006 3.994 16 C -0.521 4.521 17 H 0.075 0.925 18 C 0.072 3.928 19 N -0.894 5.894 20 Si 0.879 3.121 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.265 1.265 24 C -0.142 4.142 25 C -0.022 4.022 26 C 0.115 3.885 27 H 0.110 0.890 28 C -0.164 4.164 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.106 0.894 33 H 0.056 0.944 34 H 0.079 0.921 35 H 0.104 0.896 36 H 0.130 0.870 37 H 0.130 0.870 38 H 0.034 0.966 39 H 0.029 0.971 40 H 0.267 0.733 41 H 0.130 0.870 42 H 0.130 0.870 43 H 0.067 0.933 44 H 0.072 0.928 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.643 8.338 21.044 25.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.024 3.976 3 H 0.081 0.919 4 O -0.292 6.292 5 C -0.025 4.025 6 C -0.044 4.044 7 N -0.836 5.836 8 S 2.789 3.211 9 O -0.951 6.951 10 O -0.951 6.951 11 C -0.789 4.789 12 C -0.042 4.042 13 C -0.161 4.161 14 C 0.031 3.969 15 C -0.031 4.031 16 C -0.558 4.558 17 H 0.093 0.907 18 C -0.130 4.130 19 N -0.532 5.532 20 Si 0.706 3.294 21 H -0.200 1.200 22 H -0.210 1.210 23 H -0.189 1.189 24 C -0.161 4.161 25 C -0.041 4.041 26 C 0.009 3.991 27 H 0.128 0.872 28 C -0.223 4.223 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.124 0.876 33 H 0.075 0.925 34 H 0.097 0.903 35 H 0.122 0.878 36 H 0.148 0.852 37 H 0.148 0.852 38 H 0.052 0.948 39 H 0.048 0.952 40 H 0.077 0.923 41 H 0.148 0.852 42 H 0.148 0.852 43 H 0.086 0.914 44 H 0.090 0.910 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.280 9.020 20.896 25.861 hybrid contribution 0.023 -1.594 -0.714 1.746 sum -12.257 7.427 20.182 24.753 Atomic orbital electron populations 1.21861 0.92208 1.03571 1.02880 1.22326 0.95482 0.95024 0.84813 0.91854 1.87938 1.20754 1.77490 1.43012 1.22893 0.81341 1.00260 0.98043 1.22152 0.99925 0.98689 0.83595 1.58004 1.16571 1.79795 1.29225 1.01763 0.72688 0.74141 0.72553 1.93545 1.73656 1.57325 1.70554 1.93546 1.40193 1.84249 1.77105 1.30388 1.08510 1.23309 1.16689 1.20748 0.93678 0.92001 0.97723 1.21212 1.00310 0.98489 0.96093 1.20700 0.89846 0.95279 0.91059 1.18984 0.98159 0.91291 0.94648 1.20818 1.28656 1.00210 1.06146 0.90674 1.24989 0.94530 0.98681 0.94820 1.69891 1.35473 1.35088 1.12725 0.86787 0.79263 0.84466 0.78890 1.20017 1.21048 1.18939 1.21212 0.99817 0.95047 1.00056 1.20743 0.95805 0.95773 0.91805 1.21657 0.78838 0.98438 1.00145 0.87225 1.22171 1.00797 0.96184 1.03102 0.91537 0.90604 0.90967 0.87586 0.92544 0.90289 0.87815 0.85228 0.85231 0.94810 0.95242 0.92347 0.85230 0.85245 0.91421 0.90957 0.91877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.00 37.16 0.33 -0.61 16 2 C 0.08 0.71 3.08 -26.79 -0.08 0.62 16 3 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 4 O -0.37 -3.44 10.01 -35.23 -0.35 -3.79 16 5 C 0.05 0.41 6.99 37.31 0.26 0.67 16 6 C 0.08 0.71 6.32 -3.54 -0.02 0.69 16 7 N -1.00 -10.62 3.04 -106.27 -0.32 -10.94 16 8 S 2.69 37.43 5.75 -107.50 -0.62 36.81 16 9 O -0.96 -15.21 15.90 -57.17 -0.91 -16.11 16 10 O -0.96 -15.14 15.90 -57.17 -0.91 -16.05 16 11 C -0.70 -10.82 5.97 -39.58 -0.24 -11.06 16 12 C -0.02 -0.35 9.52 -39.59 -0.38 -0.73 16 13 C -0.14 -2.55 9.70 -39.58 -0.38 -2.93 16 14 C 0.03 0.63 5.07 -104.62 -0.53 0.10 16 15 C 0.01 0.14 4.17 -29.03 -0.12 0.02 16 16 C -0.52 -14.27 9.65 -34.44 -0.33 -14.61 16 17 H 0.08 2.28 7.98 -52.49 -0.42 1.86 16 18 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 19 N -0.89 -26.76 13.96 55.43 0.77 -25.99 16 20 Si 0.88 20.55 27.47 -169.99 -4.67 15.88 16 21 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.26 -5.87 6.54 56.52 0.37 -5.50 16 24 C -0.14 -2.55 9.70 -39.59 -0.38 -2.93 16 25 C -0.02 -0.35 9.52 -39.59 -0.38 -0.72 16 26 C 0.12 1.08 2.91 -67.64 -0.20 0.89 16 27 H 0.11 1.03 6.94 -51.93 -0.36 0.67 16 28 C -0.16 -1.40 8.63 37.16 0.32 -1.08 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.45 6.35 -51.93 -0.33 0.12 16 32 H 0.11 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.08 0.62 7.69 -51.93 -0.40 0.22 16 35 H 0.10 0.87 6.95 -51.93 -0.36 0.51 16 36 H 0.13 1.75 7.61 -52.48 -0.40 1.35 16 37 H 0.13 2.17 8.06 -52.49 -0.42 1.75 16 38 H 0.03 0.75 7.14 -51.93 -0.37 0.38 16 39 H 0.03 0.64 7.51 -51.93 -0.39 0.25 16 40 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 41 H 0.13 2.16 8.06 -52.48 -0.42 1.74 16 42 H 0.13 1.75 7.62 -52.48 -0.40 1.35 16 43 H 0.07 0.59 7.24 -51.93 -0.38 0.22 16 44 H 0.07 0.49 6.39 -51.92 -0.33 0.16 16 45 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 371.18 15.07 5.59 5.59 Total: -1.00 -33.55 371.18 -10.33 -43.88 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -6.69 Total: 0.46 kcal Atomic # 6 Polarization: -27.52 SS G_CDS: -2.23 Total: -29.75 kcal Atomic # 7 Polarization: -37.37 SS G_CDS: 0.45 Total: -36.92 kcal Atomic # 8 Polarization: -33.79 SS G_CDS: -2.17 Total: -35.96 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.67 Total: 15.88 kcal Atomic # 16 Polarization: 37.43 SS G_CDS: -0.62 Total: 36.81 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.55 -10.33 -43.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885061243.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.887 kcal (2) G-P(sol) polarization free energy of solvation -33.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds