Wall clock time and date at job start Sat Apr 11 2020 05:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.55952 * 2 1 4 4 O 1.42957 * 109.51546 * 120.13259 * 2 1 3 5 5 C 1.42962 * 114.17016 * 182.50051 * 4 2 1 6 6 C 1.53292 * 109.22202 * 297.42201 * 5 4 2 7 7 N 1.47145 * 108.38654 * 52.29732 * 6 5 4 8 8 S 1.65608 * 120.97837 * 129.44318 * 7 6 5 9 9 O 1.42100 * 106.40059 * 203.54176 * 8 7 6 10 10 O 1.42096 * 106.40050 * 336.46209 * 8 7 6 11 11 C 1.76202 * 107.21643 * 90.00232 * 8 7 6 12 12 C 1.38236 * 120.00007 * 269.72251 * 11 8 7 13 13 C 1.38228 * 120.00406 * 179.81088 * 12 11 8 14 14 C 1.38242 * 119.99509 * 0.39965 * 13 12 11 15 15 C 1.50703 * 119.99816 * 179.83063 * 14 13 12 16 16 C 1.50702 * 109.47237 * 270.02307 * 15 14 13 17 17 H 1.07994 * 120.00115 * 0.02562 * 16 15 14 18 18 C 1.37878 * 119.99669 * 180.02562 * 16 15 14 19 19 N 1.31519 * 119.99478 * 180.02562 * 18 16 15 20 20 Si 1.86803 * 120.00224 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.46701 * 90.00146 * 20 18 16 22 22 H 1.48498 * 109.46865 * 210.00035 * 20 18 16 23 23 H 1.48496 * 109.47067 * 330.00234 * 20 18 16 24 24 C 1.38230 * 119.99913 * 359.85621 * 14 13 12 25 25 C 1.38227 * 120.00414 * 359.95307 * 24 14 13 26 26 C 1.47147 * 118.03962 * 309.71775 * 7 6 5 27 27 H 1.08998 * 109.68567 * 170.01066 * 26 7 6 28 28 C 1.53002 * 109.67909 * 290.55966 * 26 7 6 29 29 H 1.09001 * 109.46700 * 299.87370 * 1 2 3 30 30 H 1.09007 * 109.46762 * 59.86746 * 1 2 3 31 31 H 1.08990 * 109.47146 * 179.87018 * 1 2 3 32 32 H 1.08995 * 109.51166 * 177.49574 * 5 4 2 33 33 H 1.08996 * 109.55158 * 57.36931 * 5 4 2 34 34 H 1.09002 * 109.67736 * 292.57314 * 6 5 4 35 35 H 1.09002 * 109.71199 * 172.04466 * 6 5 4 36 36 H 1.08004 * 119.99309 * 0.02562 * 12 11 8 37 37 H 1.07993 * 120.00545 * 180.22739 * 13 12 11 38 38 H 1.09000 * 109.46973 * 30.02602 * 15 14 13 39 39 H 1.09001 * 109.47104 * 150.02079 * 15 14 13 40 40 H 0.96998 * 119.99459 * 180.02562 * 19 18 16 41 41 H 1.08003 * 119.99575 * 179.97438 * 24 14 13 42 42 H 1.08004 * 120.00318 * 179.97438 * 25 24 14 43 43 H 1.08996 * 109.47287 * 60.00209 * 28 26 7 44 44 H 1.09010 * 109.47041 * 179.97438 * 28 26 7 45 45 H 1.08993 * 109.47445 * 299.99959 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8950 1.0271 0.0000 4 8 2.0076 -0.6764 1.1654 5 6 3.4313 -0.6857 1.2946 6 6 4.0406 -1.4459 0.1111 7 7 3.5011 -0.8762 -1.1337 8 16 4.5065 -0.4181 -2.3674 9 8 3.7946 0.5493 -3.1268 10 8 5.7745 -0.1643 -1.7784 11 6 4.7163 -1.8181 -3.4164 12 6 5.7504 -2.7060 -3.1855 13 6 5.9127 -3.8065 -4.0060 14 6 5.0459 -4.0147 -5.0626 15 6 5.2251 -5.2124 -5.9595 16 6 6.1348 -4.8504 -7.1052 17 1 6.5427 -3.8531 -7.1765 18 6 6.4462 -5.7927 -8.0623 19 7 7.2406 -5.4769 -9.0619 20 14 5.7412 -7.5182 -7.9386 21 1 4.4446 -7.5759 -8.6603 22 1 6.6898 -8.4852 -8.5470 23 1 5.5288 -7.8648 -6.5104 24 6 4.0150 -3.1240 -5.2967 25 6 3.8503 -2.0256 -4.4737 26 6 2.0424 -0.7199 -1.2476 27 1 1.8043 -0.1313 -2.1336 28 6 1.3832 -2.0968 -1.3504 29 1 -0.3633 0.5119 0.8911 30 1 -0.3633 0.5159 -0.8889 31 1 -0.3633 -1.0276 -0.0023 32 1 3.7091 -1.1789 2.2260 33 1 3.8038 0.3387 1.2999 34 1 3.7756 -2.5011 0.1771 35 1 5.1253 -1.3384 0.1242 36 1 6.4293 -2.5417 -2.3618 37 1 6.7183 -4.5022 -3.8235 38 1 5.6662 -6.0302 -5.3897 39 1 4.2556 -5.5227 -6.3494 40 1 7.4594 -6.1397 -9.7354 41 1 3.3381 -3.2864 -6.1224 42 1 3.0452 -1.3294 -4.6569 43 1 1.6158 -2.6785 -0.4585 44 1 0.3029 -1.9771 -1.4342 45 1 1.7609 -2.6157 -2.2313 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885061243.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:28 Heat of formation + Delta-G solvation = -117.261638 kcal Electronic energy + Delta-G solvation = -28056.075569 eV Core-core repulsion = 24164.541057 eV Total energy + Delta-G solvation = -3891.534512 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -40.71192 -40.28633 -38.52529 -37.07777 -36.12147 -35.56216 -34.51775 -33.57343 -32.00802 -29.78695 -29.68322 -29.29539 -25.54820 -25.23169 -24.16443 -23.75785 -22.32066 -21.18100 -19.92830 -19.14994 -19.04663 -18.62849 -17.75549 -17.01750 -16.79849 -16.64921 -16.24952 -16.02806 -15.86198 -15.62077 -15.40030 -14.87466 -14.62663 -14.51870 -14.23674 -14.13103 -13.90392 -13.65037 -13.49179 -13.43423 -13.29134 -13.19158 -13.04872 -12.72478 -12.64818 -12.59958 -12.55543 -12.36827 -12.10201 -11.95941 -11.85569 -11.74787 -11.61271 -11.29251 -11.14676 -10.84249 -10.02382 -9.99922 -9.78827 -8.35240 -6.42744 -0.78038 -0.11749 0.35901 1.35149 1.36970 1.48385 1.79407 2.31268 2.49153 2.69532 2.81179 2.99203 3.10677 3.60620 3.73197 3.82194 3.92916 4.01967 4.05088 4.06590 4.18213 4.32759 4.38810 4.42857 4.42979 4.52080 4.57739 4.74918 4.75165 4.81625 4.84772 4.91370 4.97719 5.00110 5.04059 5.05801 5.13103 5.13751 5.25319 5.36572 5.40395 5.47456 5.52388 5.74551 5.90377 6.17186 6.23044 6.63876 7.21323 8.81286 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.020863 B = 0.002878 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.768329 B = 9726.914902 C =10102.119319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.081 3.919 3 H 0.061 0.939 4 O -0.382 6.382 5 C 0.051 3.949 6 C 0.074 3.926 7 N -0.991 5.991 8 S 2.713 3.287 9 O -0.979 6.979 10 O -0.978 6.978 11 C -0.699 4.699 12 C -0.022 4.022 13 C -0.153 4.153 14 C -0.001 4.001 15 C 0.012 3.988 16 C -0.527 4.527 17 H 0.026 0.974 18 C 0.009 3.991 19 N -0.947 5.947 20 Si 0.954 3.046 21 H -0.263 1.263 22 H -0.284 1.284 23 H -0.242 1.242 24 C -0.153 4.153 25 C -0.021 4.021 26 C 0.108 3.892 27 H 0.109 0.891 28 C -0.161 4.161 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.131 0.869 33 H 0.056 0.944 34 H 0.090 0.910 35 H 0.107 0.893 36 H 0.154 0.846 37 H 0.135 0.865 38 H 0.041 0.959 39 H 0.040 0.960 40 H 0.269 0.731 41 H 0.135 0.865 42 H 0.153 0.847 43 H 0.066 0.934 44 H 0.090 0.910 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.557 7.805 23.395 28.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.021 3.979 3 H 0.079 0.921 4 O -0.301 6.301 5 C -0.027 4.027 6 C -0.050 4.050 7 N -0.831 5.831 8 S 2.807 3.193 9 O -0.970 6.970 10 O -0.969 6.969 11 C -0.786 4.786 12 C -0.041 4.041 13 C -0.172 4.172 14 C -0.002 4.002 15 C -0.025 4.025 16 C -0.565 4.565 17 H 0.044 0.956 18 C -0.188 4.188 19 N -0.587 5.587 20 Si 0.776 3.224 21 H -0.188 1.188 22 H -0.210 1.210 23 H -0.165 1.165 24 C -0.171 4.171 25 C -0.040 4.040 26 C 0.003 3.997 27 H 0.127 0.873 28 C -0.219 4.219 29 H 0.089 0.911 30 H 0.106 0.894 31 H 0.094 0.906 32 H 0.148 0.852 33 H 0.074 0.926 34 H 0.109 0.891 35 H 0.125 0.875 36 H 0.172 0.828 37 H 0.153 0.847 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.078 0.922 41 H 0.153 0.847 42 H 0.171 0.829 43 H 0.085 0.915 44 H 0.109 0.891 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.195 8.483 23.250 28.531 hybrid contribution 0.620 -1.256 -1.345 1.941 sum -13.575 7.228 21.905 26.765 Atomic orbital electron populations 1.21888 0.90626 1.04070 1.03728 1.22425 0.96741 0.94605 0.84101 0.92146 1.87936 1.21449 1.77532 1.43177 1.23045 0.80697 1.00447 0.98540 1.22414 1.00275 0.99478 0.82875 1.57790 1.16925 1.79691 1.28655 1.01152 0.72396 0.73386 0.72408 1.93516 1.73961 1.57927 1.71565 1.93519 1.41668 1.84385 1.77294 1.30820 1.07765 1.23341 1.16679 1.21017 0.94020 0.91196 0.97877 1.21353 1.00188 0.99499 0.96136 1.20594 0.91918 0.95498 0.92154 1.18824 0.97297 0.92878 0.93483 1.21061 1.29149 0.98178 1.08094 0.95572 1.26014 0.94825 1.03814 0.94170 1.70059 1.37611 1.36976 1.14071 0.85608 0.78562 0.77992 0.80219 1.18820 1.20958 1.16481 1.21349 0.99659 0.95456 1.00668 1.20999 0.96398 0.95383 0.91264 1.21886 0.77830 0.99207 1.00804 0.87316 1.22157 1.01880 0.95363 1.02504 0.91122 0.89391 0.90610 0.85153 0.92589 0.89142 0.87495 0.82807 0.84737 0.94082 0.94181 0.92184 0.84693 0.82939 0.91534 0.89115 0.92893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.00 71.98 0.65 -0.86 16 2 C 0.08 1.20 3.08 30.56 0.09 1.29 16 3 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 4 O -0.38 -6.10 10.01 -148.98 -1.49 -7.59 16 5 C 0.05 0.66 6.99 72.08 0.50 1.17 16 6 C 0.07 1.13 6.32 86.35 0.55 1.67 16 7 N -0.99 -19.17 3.04 -490.12 -1.49 -20.66 16 8 S 2.71 71.49 5.75 -56.49 -0.32 71.17 16 9 O -0.98 -29.74 15.90 -128.00 -2.03 -31.78 16 10 O -0.98 -29.45 15.90 -128.00 -2.03 -31.49 16 11 C -0.70 -20.78 5.97 22.27 0.13 -20.65 16 12 C -0.02 -0.68 9.52 22.27 0.21 -0.46 16 13 C -0.15 -5.46 9.70 22.27 0.22 -5.24 16 14 C 0.00 -0.05 5.07 -19.86 -0.10 -0.15 16 15 C 0.01 0.55 4.17 29.10 0.12 0.68 16 16 C -0.53 -29.83 9.65 25.60 0.25 -29.58 16 17 H 0.03 1.68 7.98 -2.91 -0.02 1.65 16 18 C 0.01 0.53 5.47 84.65 0.46 1.00 16 19 N -0.95 -58.64 13.96 21.45 0.30 -58.34 16 20 Si 0.95 42.25 27.47 68.60 1.88 44.13 16 21 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 22 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 23 H -0.24 -9.71 6.54 99.48 0.65 -9.06 16 24 C -0.15 -5.43 9.70 22.27 0.22 -5.21 16 25 C -0.02 -0.65 9.52 22.27 0.21 -0.44 16 26 C 0.11 1.81 2.91 44.83 0.13 1.94 16 27 H 0.11 1.84 6.94 -2.39 -0.02 1.83 16 28 C -0.16 -2.37 8.63 71.98 0.62 -1.75 16 29 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.09 0.69 8.14 -2.38 -0.02 0.67 16 31 H 0.07 0.73 6.35 -2.39 -0.02 0.72 16 32 H 0.13 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.09 1.18 7.69 -2.39 -0.02 1.17 16 35 H 0.11 1.57 6.95 -2.39 -0.02 1.55 16 36 H 0.15 3.89 7.61 -2.91 -0.02 3.87 16 37 H 0.13 4.51 8.06 -2.91 -0.02 4.49 16 38 H 0.04 1.77 7.14 -2.39 -0.02 1.75 16 39 H 0.04 1.70 7.51 -2.39 -0.02 1.68 16 40 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 41 H 0.14 4.50 8.06 -2.91 -0.02 4.48 16 42 H 0.15 3.89 7.62 -2.91 -0.02 3.87 16 43 H 0.07 1.01 7.24 -2.39 -0.02 0.99 16 44 H 0.09 1.00 6.39 -2.38 -0.02 0.98 16 45 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -73.82 371.18 0.00 -73.82 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: 0.93 Total: 17.34 kcal Atomic # 6 Polarization: -60.86 SS G_CDS: 4.26 Total: -56.60 kcal Atomic # 7 Polarization: -77.81 SS G_CDS: -1.19 Total: -79.00 kcal Atomic # 8 Polarization: -65.29 SS G_CDS: -5.56 Total: -70.85 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 1.88 Total: 44.13 kcal Atomic # 16 Polarization: 71.49 SS G_CDS: -0.32 Total: 71.17 kcal Total: -73.82 0.00 -73.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885061243.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.445 kcal (2) G-P(sol) polarization free energy of solvation -73.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds