Wall clock time and date at job start Sat Apr 11 2020 05:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47491 * 2 1 4 4 H 1.08997 * 110.88632 * 57.42747 * 3 2 1 5 5 C 1.54910 * 111.00364 * 293.54793 * 3 2 1 6 6 N 1.47427 * 104.83245 * 204.87777 * 5 3 2 7 7 S 1.65599 * 125.65032 * 204.08788 * 6 5 3 8 8 O 1.42097 * 106.40228 * 336.46307 * 7 6 5 9 9 O 1.42092 * 106.40526 * 203.53717 * 7 6 5 10 10 C 1.76206 * 107.21309 * 89.99861 * 7 6 5 11 11 C 1.38229 * 120.00152 * 270.27602 * 10 7 6 12 12 C 1.38238 * 120.00124 * 180.28709 * 11 10 7 13 13 C 1.38234 * 119.99675 * 359.45911 * 12 11 10 14 14 C 1.50703 * 120.00257 * 180.27927 * 13 12 11 15 15 C 1.50706 * 109.46982 * 90.00130 * 14 13 12 16 16 H 1.08002 * 119.99611 * 0.02562 * 15 14 13 17 17 C 1.37868 * 120.00068 * 180.02562 * 15 14 13 18 18 N 1.31519 * 119.99987 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00212 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46956 * 89.99950 * 19 17 15 21 21 H 1.48497 * 109.47226 * 210.00373 * 19 17 15 22 22 H 1.48500 * 109.46974 * 330.00423 * 19 17 15 23 23 C 1.38234 * 120.00240 * 0.26327 * 13 12 11 24 24 C 1.38234 * 119.99835 * 90.00307 * 10 7 6 25 25 C 1.47025 * 108.70255 * 24.35725 * 6 5 3 26 26 C 1.54335 * 107.26601 * 358.58323 * 25 6 5 27 27 H 1.09005 * 111.00457 * 219.60532 * 26 25 6 28 28 O 1.42902 * 110.51633 * 96.45392 * 26 25 6 29 29 H 1.09005 * 109.46737 * 59.99706 * 1 2 3 30 30 H 1.08996 * 109.47426 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46912 * 300.00329 * 1 2 3 32 32 H 1.09004 * 109.46912 * 239.99671 * 2 1 3 33 33 H 1.08996 * 109.46912 * 120.00183 * 2 1 3 34 34 H 1.08992 * 110.37211 * 86.03705 * 5 3 2 35 35 H 1.09003 * 110.36515 * 323.71620 * 5 3 2 36 36 H 1.08004 * 120.00244 * 0.02562 * 11 10 7 37 37 H 1.08002 * 120.00519 * 179.74530 * 12 11 10 38 38 H 1.08988 * 109.47584 * 210.00457 * 14 13 12 39 39 H 1.09000 * 109.47013 * 330.00974 * 14 13 12 40 40 H 0.97006 * 119.99533 * 179.97438 * 18 17 15 41 41 H 1.07997 * 120.00460 * 180.02562 * 23 13 12 42 42 H 1.08001 * 120.00274 * 359.97438 * 24 10 7 43 43 H 1.08991 * 109.88775 * 118.13215 * 25 6 5 44 44 H 1.09005 * 109.88179 * 239.29937 * 25 6 5 45 45 H 0.96695 * 113.99686 * 66.50410 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6527 1.9916 0.8582 5 6 1.6805 2.1585 -1.3257 6 7 2.6880 3.2260 -1.4634 7 16 2.5027 4.6213 -2.3358 8 8 1.5093 4.3530 -3.3158 9 8 3.8119 5.0696 -2.6586 10 6 1.8173 5.8280 -1.2500 11 6 0.4457 5.9543 -1.1346 12 6 -0.0921 6.9050 -0.2872 13 6 0.7420 7.7218 0.4531 14 6 0.1559 8.7540 1.3817 15 6 -0.0440 8.1464 2.7462 16 1 0.2268 7.1160 2.9234 17 6 -0.5724 8.9058 3.7684 18 7 -0.9026 10.1604 3.5524 19 14 -0.8194 8.1529 5.4600 20 1 0.4047 8.3561 6.2757 21 1 -1.9738 8.8054 6.1285 22 1 -1.0855 6.6986 5.3205 23 6 2.1137 7.5917 0.3420 24 6 2.6513 6.6446 -0.5094 25 6 3.8869 2.8435 -0.7032 26 6 3.5907 1.4849 -0.0337 27 1 3.9995 1.4497 0.9762 28 8 4.1088 0.4133 -0.8245 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 0.6799 2.5867 -1.2664 35 1 1.7475 1.4634 -2.1627 36 1 -0.2060 5.3131 -1.7096 37 1 -1.1638 7.0065 -0.2001 38 1 0.8359 9.6023 1.4577 39 1 -0.8038 9.0916 0.9903 40 1 -1.2748 10.6946 4.2716 41 1 2.7653 8.2295 0.9207 42 1 3.7231 6.5427 -0.5959 43 1 4.7386 2.7492 -1.3768 44 1 4.0966 3.5929 0.0601 45 1 5.0741 0.3948 -0.8776 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885077752.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:11 Heat of formation + Delta-G solvation = -111.113085 kcal Electronic energy + Delta-G solvation = -27660.464947 eV Core-core repulsion = 23769.197056 eV Total energy + Delta-G solvation = -3891.267891 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.62637 -38.82031 -37.18229 -35.79039 -35.69576 -34.11035 -33.70650 -31.58341 -30.60162 -29.37892 -28.34691 -27.45246 -24.09629 -23.72316 -22.38386 -22.12091 -20.87344 -20.32853 -19.13342 -18.08294 -17.81985 -17.26795 -16.48458 -15.77708 -15.26857 -15.14981 -15.03578 -14.79221 -14.40873 -14.40091 -14.33868 -13.77294 -13.44566 -13.25752 -13.13715 -12.86417 -12.64552 -12.46295 -12.22789 -12.20972 -12.06862 -11.96588 -11.80259 -11.78231 -11.51547 -11.07903 -10.96955 -10.94100 -10.88851 -10.63446 -10.54910 -10.51183 -10.37363 -9.83576 -9.67590 -9.15901 -8.61795 -8.57116 -8.40167 -6.20306 -4.25736 0.40998 1.31342 1.77158 2.98917 3.19982 3.26947 3.29795 3.75167 3.80104 4.05211 4.10844 4.19141 4.33778 4.48016 4.64498 4.93210 4.98293 5.11563 5.12819 5.17340 5.19730 5.20850 5.23708 5.30625 5.46718 5.59419 5.62081 5.69824 5.73692 5.78673 5.84058 5.88721 5.92522 6.03822 6.17946 6.22559 6.24011 6.30693 6.50393 6.81394 6.88407 7.27047 7.30371 7.41063 7.56853 7.74090 8.09703 8.78694 9.39094 10.89793 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011414 B = 0.003418 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2452.634089 B = 8188.903045 C = 9528.301377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.104 4.104 3 C -0.094 4.094 4 H 0.098 0.902 5 C 0.129 3.871 6 N -1.010 6.010 7 S 2.711 3.289 8 O -0.959 6.959 9 O -0.962 6.962 10 C -0.705 4.705 11 C -0.023 4.023 12 C -0.145 4.145 13 C 0.027 3.973 14 C 0.039 3.961 15 C -0.517 4.517 16 H 0.058 0.942 17 C 0.061 3.939 18 N -0.891 5.891 19 Si 0.899 3.101 20 H -0.279 1.279 21 H -0.284 1.284 22 H -0.273 1.273 23 C -0.145 4.145 24 C -0.024 4.024 25 C 0.091 3.909 26 C 0.098 3.902 27 H 0.079 0.921 28 O -0.555 6.555 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.129 0.871 37 H 0.129 0.871 38 H 0.035 0.965 39 H 0.035 0.965 40 H 0.264 0.736 41 H 0.129 0.871 42 H 0.128 0.872 43 H 0.077 0.923 44 H 0.075 0.925 45 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.135 -18.516 -7.168 21.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.142 4.142 3 C -0.113 4.113 4 H 0.117 0.883 5 C 0.005 3.995 6 N -0.848 5.848 7 S 2.806 3.194 8 O -0.950 6.950 9 O -0.952 6.952 10 C -0.794 4.794 11 C -0.042 4.042 12 C -0.164 4.164 13 C 0.026 3.974 14 C 0.002 3.998 15 C -0.555 4.555 16 H 0.076 0.924 17 C -0.141 4.141 18 N -0.529 5.529 19 Si 0.726 3.274 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.198 1.198 23 C -0.164 4.164 24 C -0.043 4.043 25 C -0.035 4.035 26 C 0.038 3.962 27 H 0.097 0.903 28 O -0.361 6.361 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.146 0.854 37 H 0.147 0.853 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.074 0.926 41 H 0.147 0.853 42 H 0.146 0.854 43 H 0.095 0.905 44 H 0.093 0.907 45 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 7.636 -18.301 -8.102 21.422 hybrid contribution 0.140 0.333 1.818 1.853 sum 7.776 -17.968 -6.284 20.563 Atomic orbital electron populations 1.21860 0.95759 1.01776 1.02206 1.21277 0.95412 0.94504 1.03030 1.22568 0.92693 0.97629 0.98450 0.88336 1.22072 0.91164 0.88735 0.97575 1.58610 1.23408 1.34254 1.68501 1.01211 0.73333 0.71660 0.73164 1.93552 1.61175 1.84532 1.55745 1.93540 1.38612 1.80786 1.82297 1.30416 1.03761 1.21595 1.23639 1.20765 0.92495 0.96153 0.94833 1.21246 1.00533 0.96888 0.97711 1.21114 0.93152 0.93251 0.89836 1.18545 0.96795 0.92001 0.92476 1.20944 1.42958 0.97962 0.93679 0.92355 1.25006 0.95129 0.94838 0.99163 1.69952 1.42562 1.07243 1.33115 0.86484 0.77912 0.79368 0.83647 1.20461 1.20997 1.19761 1.21241 0.95594 0.99821 0.99760 1.20757 0.98615 0.92768 0.92179 1.22495 0.87811 0.97590 0.95591 1.22812 0.95076 0.84928 0.93412 0.90340 1.86511 1.26094 1.50117 1.73346 0.92420 0.92667 0.92558 0.90659 0.91733 0.90444 0.90674 0.85362 0.85322 0.94693 0.94670 0.92590 0.85346 0.85395 0.90451 0.90652 0.77336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.22 9.76 37.16 0.36 -0.85 16 2 C -0.10 -0.83 5.07 -26.73 -0.14 -0.96 16 3 C -0.09 -0.81 3.00 -88.47 -0.27 -1.08 16 4 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 5 C 0.13 1.35 5.63 -2.53 -0.01 1.34 16 6 N -1.01 -11.82 3.70 -111.41 -0.41 -12.23 16 7 S 2.71 39.72 5.94 -107.50 -0.64 39.08 16 8 O -0.96 -16.02 16.88 -57.17 -0.96 -16.98 16 9 O -0.96 -15.83 16.86 -57.17 -0.96 -16.79 16 10 C -0.70 -11.30 5.97 -39.59 -0.24 -11.53 16 11 C -0.02 -0.38 9.52 -39.58 -0.38 -0.76 16 12 C -0.14 -2.69 9.70 -39.58 -0.38 -3.08 16 13 C 0.03 0.55 5.07 -104.62 -0.53 0.02 16 14 C 0.04 0.94 5.10 -29.03 -0.15 0.79 16 15 C -0.52 -13.75 9.09 -34.44 -0.31 -14.07 16 16 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 18 N -0.89 -25.30 13.29 55.43 0.74 -24.56 16 19 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 20 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 23 C -0.15 -2.69 9.70 -39.58 -0.38 -3.07 16 24 C -0.02 -0.39 9.52 -39.58 -0.38 -0.76 16 25 C 0.09 0.85 6.75 -3.06 -0.02 0.83 16 26 C 0.10 0.76 4.09 -24.89 -0.10 0.66 16 27 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 28 O -0.55 -4.13 12.09 -35.23 -0.43 -4.55 16 29 H 0.06 0.45 7.46 -51.93 -0.39 0.06 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.65 7.43 -51.93 -0.39 0.27 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.78 8.07 -51.93 -0.42 0.36 16 35 H 0.08 0.78 8.00 -51.93 -0.42 0.37 16 36 H 0.13 1.82 7.62 -52.48 -0.40 1.42 16 37 H 0.13 2.26 8.06 -52.49 -0.42 1.84 16 38 H 0.03 0.89 8.08 -51.94 -0.42 0.47 16 39 H 0.04 0.90 8.09 -51.93 -0.42 0.48 16 40 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 41 H 0.13 2.25 8.06 -52.49 -0.42 1.82 16 42 H 0.13 1.80 7.62 -52.49 -0.40 1.40 16 43 H 0.08 0.67 8.07 -51.93 -0.42 0.25 16 44 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 45 H 0.38 1.32 9.12 45.56 0.42 1.74 16 LS Contribution 383.62 15.07 5.78 5.78 Total: -1.00 -33.17 383.62 -11.10 -44.27 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -6.17 Total: 1.37 kcal Atomic # 6 Polarization: -27.95 SS G_CDS: -3.02 Total: -30.97 kcal Atomic # 7 Polarization: -37.12 SS G_CDS: 0.32 Total: -36.79 kcal Atomic # 8 Polarization: -35.97 SS G_CDS: -2.35 Total: -38.33 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Atomic # 16 Polarization: 39.72 SS G_CDS: -0.64 Total: 39.08 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.17 -11.10 -44.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885077752.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.843 kcal (2) G-P(sol) polarization free energy of solvation -33.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds