Wall clock time and date at job start Sat Apr 11 2020 05:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.48353 * 2 1 4 4 C 1.53099 * 109.47751 * 120.02129 * 2 1 3 5 5 C 1.53179 * 109.16231 * 177.60738 * 4 2 1 6 6 H 1.08993 * 109.54582 * 62.97164 * 5 4 2 7 7 N 1.46496 * 109.54414 * 183.15281 * 5 4 2 8 8 S 1.65601 * 120.00024 * 214.99811 * 7 5 4 9 9 O 1.42100 * 106.39998 * 311.45955 * 8 7 5 10 10 O 1.42101 * 106.40323 * 178.53828 * 8 7 5 11 11 C 1.76198 * 107.21773 * 64.99593 * 8 7 5 12 12 C 1.38237 * 119.99838 * 90.00173 * 11 8 7 13 13 C 1.38235 * 120.00204 * 179.97438 * 12 11 8 14 14 C 1.38238 * 119.99663 * 0.02562 * 13 12 11 15 15 C 1.50706 * 120.00103 * 179.97438 * 14 13 12 16 16 C 1.50698 * 109.47294 * 89.99178 * 15 14 13 17 17 H 1.08005 * 119.99819 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00046 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00192 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99979 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47297 * 180.02562 * 20 18 16 22 22 H 1.48503 * 109.47261 * 60.00310 * 20 18 16 23 23 H 1.48500 * 109.47454 * 300.00304 * 20 18 16 24 24 C 1.38234 * 120.00173 * 0.24460 * 14 13 12 25 25 C 1.38234 * 120.00132 * 269.97818 * 11 8 7 26 26 C 1.53186 * 109.03260 * 303.01736 * 5 4 2 27 27 C 1.53083 * 109.16315 * 56.98153 * 26 5 4 28 28 O 1.42902 * 109.41839 * 302.38914 * 27 26 5 29 29 H 1.08992 * 109.47437 * 299.97988 * 1 2 3 30 30 H 1.09001 * 109.46841 * 59.98307 * 1 2 3 31 31 H 1.09001 * 109.47127 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.52072 * 57.69906 * 4 2 1 33 33 H 1.08998 * 109.51916 * 297.50761 * 4 2 1 34 34 H 0.97005 * 120.00151 * 34.99182 * 7 5 4 35 35 H 1.08001 * 120.00254 * 359.97438 * 12 11 8 36 36 H 1.07995 * 120.00679 * 179.97438 * 13 12 11 37 37 H 1.09001 * 109.46953 * 329.99736 * 15 14 13 38 38 H 1.08993 * 109.46894 * 209.99366 * 15 14 13 39 39 H 0.97001 * 119.99934 * 359.97438 * 19 18 16 40 40 H 1.08005 * 120.00155 * 179.72911 * 24 14 13 41 41 H 1.07996 * 120.00229 * 0.02562 * 25 11 8 42 42 H 1.08997 * 109.51515 * 176.89018 * 26 5 4 43 43 H 1.08997 * 109.52066 * 297.07205 * 26 5 4 44 44 H 1.09002 * 109.47939 * 182.40436 * 27 26 5 45 45 H 1.09004 * 109.49251 * 62.38115 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0275 0.0000 4 6 2.0405 -0.7222 1.2497 5 6 3.5711 -0.7704 1.2126 6 1 3.9687 0.2439 1.2428 7 7 4.0657 -1.5254 2.3665 8 16 5.4827 -1.0823 3.1001 9 8 6.4379 -0.9171 2.0611 10 8 5.6665 -1.9753 4.1901 11 6 5.2298 0.5140 3.8018 12 6 4.7612 0.6334 5.0968 13 6 4.5633 1.8858 5.6475 14 6 4.8336 3.0188 4.9030 15 6 4.6173 4.3842 5.5032 16 6 5.8811 4.8383 6.1870 17 1 6.7538 4.2020 6.1866 18 6 5.9236 6.0664 6.8121 19 7 4.8611 6.8414 6.8121 20 14 7.4904 6.6296 7.6591 21 1 7.2772 7.9750 8.2505 22 1 8.5937 6.6936 6.6672 23 1 7.8456 5.6678 8.7333 24 6 5.2969 2.8994 3.6061 25 6 5.5006 1.6470 3.0575 26 6 4.0179 -1.4597 -0.0804 27 6 3.4310 -0.7092 -1.2786 28 8 2.0068 -0.6743 -1.1662 29 1 -0.3634 0.5135 0.8901 30 1 -0.3633 0.5141 -0.8898 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6444 -1.7374 1.2711 33 1 1.7146 -0.1841 2.1399 34 1 3.5632 -2.2847 2.7009 35 1 4.5496 -0.2517 5.6783 36 1 4.1968 1.9792 6.6591 37 1 3.8073 4.3369 6.2310 38 1 4.3568 5.0903 4.7149 39 1 4.0476 6.5491 6.3719 40 1 5.5039 3.7846 3.0230 41 1 5.8667 1.5537 2.0458 42 1 5.1061 -1.4492 -0.1414 43 1 3.6618 -2.4899 -0.0858 44 1 3.7105 -1.2201 -2.2000 45 1 3.8194 0.3092 -1.2957 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885082821.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:36 Heat of formation + Delta-G solvation = -143.481816 kcal Electronic energy + Delta-G solvation = -27562.986777 eV Core-core repulsion = 23670.315273 eV Total energy + Delta-G solvation = -3892.671504 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 3.81 seconds Orbital eigenvalues (eV) -40.59838 -40.34643 -38.40630 -37.03627 -36.74311 -35.98251 -33.70924 -33.28455 -32.07532 -31.93086 -28.93800 -28.43415 -25.53372 -24.90904 -23.85701 -23.13918 -22.76789 -21.56795 -20.55932 -19.18718 -18.97683 -18.48632 -17.57940 -17.24871 -16.80867 -16.55784 -16.31197 -15.80516 -15.68492 -15.54034 -15.50154 -15.17716 -15.08632 -14.67502 -14.56111 -13.91045 -13.60485 -13.56498 -13.48396 -13.32782 -13.27419 -13.21214 -13.12776 -12.83117 -12.60611 -12.57359 -12.48365 -12.22947 -12.14078 -12.01891 -11.97458 -11.66892 -11.28219 -11.15801 -10.64209 -10.57728 -10.50762 -10.06541 -10.00328 -8.75468 -6.49758 -0.70784 -0.17060 0.28931 1.50368 1.56870 1.77228 1.90556 2.41543 2.53531 2.72860 2.85692 3.06925 3.24336 3.59568 3.75234 3.75686 3.85862 3.89737 3.99396 4.00668 4.08792 4.24012 4.35526 4.36689 4.43188 4.54170 4.67701 4.69374 4.74756 4.76242 4.80382 4.86864 4.94549 4.99097 5.03775 5.06617 5.09018 5.15996 5.20149 5.30293 5.32960 5.69809 5.76311 5.87333 6.02206 6.06310 6.30668 6.46376 7.29494 8.63895 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014234 B = 0.002967 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.643776 B = 9435.018186 C =10517.599555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.081 3.919 3 H 0.061 0.939 4 C -0.151 4.151 5 C 0.145 3.855 6 H 0.086 0.914 7 N -1.096 6.096 8 S 2.723 3.277 9 O -0.977 6.977 10 O -0.985 6.985 11 C -0.699 4.699 12 C -0.016 4.016 13 C -0.155 4.155 14 C 0.000 4.000 15 C 0.032 3.968 16 C -0.610 4.610 17 H 0.045 0.955 18 C -0.029 4.029 19 N -0.930 5.930 20 Si 1.115 2.885 21 H -0.280 1.280 22 H -0.270 1.270 23 H -0.271 1.271 24 C -0.154 4.154 25 C -0.019 4.019 26 C -0.173 4.173 27 C 0.059 3.941 28 O -0.394 6.394 29 H 0.081 0.919 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.430 0.570 35 H 0.157 0.843 36 H 0.128 0.872 37 H 0.010 0.990 38 H 0.011 0.989 39 H 0.259 0.741 40 H 0.129 0.871 41 H 0.158 0.842 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.112 0.888 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.008 -18.335 -14.887 24.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.023 3.977 3 H 0.079 0.921 4 C -0.191 4.191 5 C 0.038 3.962 6 H 0.104 0.896 7 N -0.858 5.858 8 S 2.813 3.187 9 O -0.967 6.967 10 O -0.975 6.975 11 C -0.786 4.786 12 C -0.035 4.035 13 C -0.174 4.174 14 C 0.000 4.000 15 C -0.004 4.004 16 C -0.648 4.648 17 H 0.063 0.937 18 C -0.227 4.227 19 N -0.567 5.567 20 Si 0.936 3.064 21 H -0.205 1.205 22 H -0.195 1.195 23 H -0.196 1.196 24 C -0.173 4.173 25 C -0.038 4.038 26 C -0.213 4.213 27 C -0.018 4.018 28 O -0.313 6.313 29 H 0.100 0.900 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.108 0.892 33 H 0.106 0.894 34 H 0.267 0.733 35 H 0.174 0.826 36 H 0.146 0.854 37 H 0.028 0.972 38 H 0.029 0.971 39 H 0.068 0.932 40 H 0.147 0.853 41 H 0.175 0.825 42 H 0.102 0.898 43 H 0.103 0.897 44 H 0.130 0.870 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.602 -17.526 -14.184 23.232 hybrid contribution -1.159 -0.345 -0.060 1.211 sum -6.761 -17.871 -14.244 23.832 Atomic orbital electron populations 1.21769 0.91914 1.03256 1.03118 1.22209 0.96128 0.95109 0.84283 0.92124 1.22554 0.93384 1.03602 0.99511 1.20968 0.95734 0.94881 0.84585 0.89638 1.55329 1.44408 1.43449 1.42570 1.00887 0.72918 0.72474 0.72388 1.93546 1.59172 1.86692 1.57242 1.93546 1.85213 1.63494 1.55264 1.30833 1.19690 1.21824 1.06255 1.21022 0.91543 0.98160 0.92812 1.21280 1.03345 0.92179 1.00588 1.20615 0.89737 0.96116 0.93562 1.18431 0.96901 0.90058 0.95059 1.22159 0.98468 1.05521 1.38615 0.93654 1.27342 1.05593 0.93515 0.96261 1.70920 1.03287 1.39475 1.43015 0.82952 0.71039 0.76264 0.76160 1.20494 1.19536 1.19609 1.21280 1.02110 0.98409 0.95455 1.21042 0.92333 0.90770 0.99654 1.22763 1.02566 1.01579 0.94358 1.22683 0.80167 1.00319 0.98600 1.87925 1.21790 1.78087 1.43533 0.89983 0.91825 0.91547 0.89185 0.89416 0.73251 0.82577 0.85428 0.97213 0.97117 0.93153 0.85300 0.82483 0.89751 0.89656 0.87024 0.92425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.57 71.98 0.69 -1.05 16 2 C 0.08 1.17 3.26 30.63 0.10 1.27 16 3 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 4 C -0.15 -1.98 4.95 30.69 0.15 -1.83 16 5 C 0.15 2.24 2.75 45.11 0.12 2.36 16 6 H 0.09 1.37 7.24 -2.39 -0.02 1.35 16 7 N -1.10 -17.52 5.48 -168.89 -0.93 -18.45 16 8 S 2.72 65.22 5.65 -56.49 -0.32 64.90 16 9 O -0.98 -27.34 16.66 -128.00 -2.13 -29.47 16 10 O -0.98 -28.41 17.28 -128.00 -2.21 -30.62 16 11 C -0.70 -19.76 5.82 22.27 0.13 -19.63 16 12 C -0.02 -0.49 9.52 22.27 0.21 -0.28 16 13 C -0.16 -5.67 9.70 22.27 0.22 -5.45 16 14 C 0.00 0.00 5.07 -19.86 -0.10 -0.10 16 15 C 0.03 1.62 4.42 29.10 0.13 1.75 16 16 C -0.61 -34.06 9.09 25.60 0.23 -33.83 16 17 H 0.05 2.54 7.74 -2.91 -0.02 2.52 16 18 C -0.03 -1.61 5.46 84.65 0.46 -1.15 16 19 N -0.93 -55.75 13.65 21.45 0.29 -55.45 16 20 Si 1.11 49.41 29.90 68.60 2.05 51.46 16 21 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 22 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 23 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 24 C -0.15 -5.54 9.70 22.27 0.22 -5.33 16 25 C -0.02 -0.56 8.91 22.27 0.20 -0.36 16 26 C -0.17 -2.53 5.75 30.68 0.18 -2.36 16 27 C 0.06 0.83 6.84 72.01 0.49 1.32 16 28 O -0.39 -6.67 10.41 -148.98 -1.55 -8.22 16 29 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.43 4.84 8.84 -96.74 -0.86 3.99 16 35 H 0.16 3.88 7.62 -2.91 -0.02 3.86 16 36 H 0.13 4.54 8.06 -2.91 -0.02 4.52 16 37 H 0.01 0.50 7.95 -2.39 -0.02 0.49 16 38 H 0.01 0.55 7.95 -2.39 -0.02 0.53 16 39 H 0.26 15.53 7.22 -92.71 -0.67 14.86 16 40 H 0.13 4.50 8.06 -2.91 -0.02 4.47 16 41 H 0.16 3.74 7.62 -2.91 -0.02 3.72 16 42 H 0.08 1.37 7.75 -2.39 -0.02 1.35 16 43 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 45 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 Total: -1.00 -72.00 380.48 -1.13 -73.13 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: 0.23 Total: 17.38 kcal Atomic # 6 Polarization: -68.09 SS G_CDS: 3.43 Total: -64.66 kcal Atomic # 7 Polarization: -73.27 SS G_CDS: -0.63 Total: -73.90 kcal Atomic # 8 Polarization: -62.42 SS G_CDS: -5.89 Total: -68.31 kcal Atomic # 14 Polarization: 49.41 SS G_CDS: 2.05 Total: 51.46 kcal Atomic # 16 Polarization: 65.22 SS G_CDS: -0.32 Total: 64.90 kcal Total: -72.00 -1.13 -73.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885082821.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.352 kcal (2) G-P(sol) polarization free energy of solvation -71.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.81 seconds