Wall clock time and date at job start Sat Apr 11 2020 05:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.87406 * 2 1 4 4 O 1.43748 * 109.87809 * 238.84096 * 2 1 3 5 5 C 1.44381 * 106.97480 * 214.06082 * 4 2 1 6 6 C 1.55349 * 103.50115 * 40.09747 * 5 4 2 7 7 C 1.54093 * 109.87993 * 121.01192 * 2 1 3 8 8 C 1.53002 * 110.48906 * 2.64265 * 7 2 1 9 9 N 1.46501 * 110.48916 * 240.12959 * 7 2 1 10 10 S 1.65598 * 120.00104 * 174.50661 * 9 7 2 11 11 O 1.42101 * 106.40443 * 174.83605 * 10 9 7 12 12 O 1.42108 * 106.40326 * 307.75442 * 10 9 7 13 13 C 1.76193 * 107.22017 * 61.29201 * 10 9 7 14 14 C 1.38238 * 120.00328 * 263.34657 * 13 10 9 15 15 C 1.38239 * 120.00086 * 179.76008 * 14 13 10 16 16 C 1.38231 * 119.99972 * 0.51693 * 15 14 13 17 17 C 1.50696 * 120.00038 * 179.71969 * 16 15 14 18 18 C 1.50709 * 109.47389 * 270.01970 * 17 16 15 19 19 H 1.08001 * 119.99203 * 359.97438 * 18 17 16 20 20 C 1.37870 * 120.00272 * 179.97438 * 18 17 16 21 21 N 1.31518 * 120.00001 * 179.97438 * 20 18 17 22 22 Si 1.86805 * 119.99966 * 0.02562 * 20 18 17 23 23 H 1.48495 * 109.47074 * 89.99823 * 22 20 18 24 24 H 1.48499 * 109.46860 * 209.99688 * 22 20 18 25 25 H 1.48503 * 109.46924 * 329.99787 * 22 20 18 26 26 C 1.38241 * 119.99916 * 359.74062 * 16 15 14 27 27 C 1.38232 * 120.00095 * 359.97438 * 26 16 15 28 28 H 1.08996 * 109.46760 * 298.99253 * 1 2 3 29 29 H 1.09000 * 109.46622 * 58.98523 * 1 2 3 30 30 H 1.09001 * 109.47217 * 178.98626 * 1 2 3 31 31 H 1.09003 * 110.61333 * 158.56393 * 5 4 2 32 32 H 1.09001 * 110.62045 * 281.40329 * 5 4 2 33 33 H 1.09000 * 111.00356 * 204.78909 * 6 5 4 34 34 H 1.08995 * 110.96072 * 81.07603 * 6 5 4 35 35 H 1.08997 * 109.47233 * 298.16096 * 8 7 2 36 36 H 1.09006 * 109.46635 * 58.15515 * 8 7 2 37 37 H 1.08994 * 109.47699 * 178.15632 * 8 7 2 38 38 H 0.97001 * 119.99841 * 354.77815 * 9 7 2 39 39 H 1.08003 * 119.99911 * 0.02562 * 14 13 10 40 40 H 1.08002 * 119.99799 * 180.22957 * 15 14 13 41 41 H 1.09002 * 109.47215 * 30.01990 * 17 16 15 42 42 H 1.09000 * 109.47451 * 150.02093 * 17 16 15 43 43 H 0.96999 * 120.00110 * 179.97438 * 21 20 18 44 44 H 1.08000 * 119.99893 * 179.97438 * 26 16 15 45 45 H 1.07996 * 120.00004 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 8 2.0188 -0.6995 -1.1568 5 6 3.2380 -1.3651 -0.7630 6 6 2.9188 -1.8927 0.6629 7 6 2.0540 -0.7466 1.2420 8 6 0.8897 -1.3136 2.0568 9 7 2.8711 0.1446 2.0692 10 16 3.4417 -0.3768 3.5337 11 8 4.2857 0.6550 4.0260 12 8 2.3176 -0.8694 4.2501 13 6 4.4816 -1.7650 3.2241 14 6 3.9780 -3.0467 3.3453 15 6 4.7926 -4.1357 3.0975 16 6 6.1137 -3.9433 2.7391 17 6 7.0034 -5.1307 2.4752 18 6 7.6748 -5.5502 3.7576 19 1 7.4772 -5.0107 4.6720 20 6 8.5411 -6.6227 3.7633 21 7 9.1274 -6.9885 4.8822 22 14 8.8833 -7.5554 2.1813 23 1 10.0422 -6.9411 1.4852 24 1 9.1914 -8.9729 2.4992 25 1 7.6882 -7.4938 1.3020 26 6 6.6188 -2.6617 2.6232 27 6 5.8026 -1.5726 2.8651 28 1 -0.3633 0.4981 0.8989 29 1 -0.3632 0.5295 -0.8808 30 1 -0.3634 -1.0275 -0.0182 31 1 3.4584 -2.1926 -1.4374 32 1 4.0691 -0.6604 -0.7375 33 1 3.8314 -2.0234 1.2444 34 1 2.3520 -2.8226 0.6168 35 1 0.2600 -0.4961 2.4080 36 1 0.3001 -1.9832 1.4306 37 1 1.2795 -1.8653 2.9122 38 1 3.0746 1.0415 1.7608 39 1 2.9469 -3.1971 3.6293 40 1 4.3980 -5.1370 3.1886 41 1 6.4035 -5.9562 2.0922 42 1 7.7612 -4.8605 1.7398 43 1 9.7367 -7.7433 4.8863 44 1 7.6511 -2.5114 2.3435 45 1 6.1974 -0.5714 2.7750 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885102302.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:22 Heat of formation + Delta-G solvation = -89.598227 kcal Electronic energy + Delta-G solvation = -28529.245918 eV Core-core repulsion = 24638.910981 eV Total energy + Delta-G solvation = -3890.334936 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 2.51 seconds Orbital eigenvalues (eV) -40.49204 -39.03246 -37.30747 -35.90296 -35.59968 -33.78947 -32.26524 -31.82588 -30.95747 -30.63935 -28.04711 -27.75103 -25.13238 -23.61332 -22.70096 -22.44927 -20.79686 -20.30602 -19.28119 -17.98369 -17.79283 -16.95425 -16.86005 -16.08141 -15.79630 -15.53022 -15.15822 -14.74146 -14.48277 -14.39272 -14.20503 -13.96586 -13.36413 -13.28484 -13.21549 -12.98199 -12.75388 -12.69870 -12.50165 -12.25039 -12.10510 -11.97191 -11.85122 -11.64910 -11.58266 -11.32325 -11.23417 -10.99343 -10.96455 -10.73292 -10.57145 -10.26015 -10.16376 -9.96449 -9.78770 -9.57581 -8.74839 -8.71322 -8.48881 -6.22230 -4.24217 0.38519 1.16019 1.64635 2.87341 3.17202 3.25918 3.26271 3.51892 3.65308 3.97639 4.04979 4.27023 4.36827 4.40343 4.48542 4.72844 4.86023 4.92733 5.02098 5.05511 5.10634 5.13387 5.28175 5.35494 5.44047 5.47727 5.51444 5.60936 5.67398 5.72442 5.74583 5.78568 5.84981 5.88602 6.06350 6.14159 6.20402 6.35975 6.58021 6.62763 6.63565 6.72379 6.75943 7.20335 7.23628 7.49002 8.30234 8.81149 9.35819 10.90251 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016635 B = 0.003389 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.825144 B = 8259.579637 C = 9173.131236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.081 3.919 3 H 0.074 0.926 4 O -0.371 6.371 5 C 0.050 3.950 6 C -0.191 4.191 7 C 0.151 3.849 8 C -0.179 4.179 9 N -1.109 6.109 10 S 2.697 3.303 11 O -0.964 6.964 12 O -0.957 6.957 13 C -0.702 4.702 14 C -0.022 4.022 15 C -0.142 4.142 16 C 0.034 3.966 17 C 0.006 3.994 18 C -0.521 4.521 19 H 0.075 0.925 20 C 0.073 3.927 21 N -0.894 5.894 22 Si 0.879 3.121 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.265 1.265 26 C -0.142 4.142 27 C -0.021 4.021 28 H 0.075 0.925 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.096 0.904 32 H 0.063 0.937 33 H 0.106 0.894 34 H 0.093 0.907 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.092 0.908 38 H 0.416 0.584 39 H 0.133 0.867 40 H 0.130 0.870 41 H 0.034 0.966 42 H 0.029 0.971 43 H 0.267 0.733 44 H 0.130 0.870 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.977 13.647 -11.221 23.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.021 3.979 3 H 0.092 0.908 4 O -0.290 6.290 5 C -0.026 4.026 6 C -0.230 4.230 7 C 0.062 3.938 8 C -0.237 4.237 9 N -0.867 5.867 10 S 2.789 3.211 11 O -0.955 6.955 12 O -0.947 6.947 13 C -0.791 4.791 14 C -0.041 4.041 15 C -0.160 4.160 16 C 0.033 3.967 17 C -0.031 4.031 18 C -0.559 4.559 19 H 0.093 0.907 20 C -0.130 4.130 21 N -0.531 5.531 22 Si 0.706 3.294 23 H -0.200 1.200 24 H -0.210 1.210 25 H -0.189 1.189 26 C -0.161 4.161 27 C -0.041 4.041 28 H 0.093 0.907 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.114 0.886 32 H 0.081 0.919 33 H 0.124 0.876 34 H 0.112 0.888 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.110 0.890 38 H 0.251 0.749 39 H 0.151 0.849 40 H 0.148 0.852 41 H 0.052 0.948 42 H 0.048 0.952 43 H 0.077 0.923 44 H 0.148 0.852 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -16.191 13.714 -10.460 23.657 hybrid contribution 1.101 -0.729 -0.997 1.654 sum -15.089 12.986 -11.456 22.969 Atomic orbital electron populations 1.22065 0.93014 1.03455 1.02534 1.22901 0.95633 0.95458 0.83866 0.90848 1.88908 1.39978 1.67630 1.32499 1.23579 0.87386 0.96526 0.95147 1.24186 1.02457 0.98583 0.97727 1.21499 0.91003 0.89555 0.91727 1.22743 0.97431 1.02498 1.01025 1.55712 1.66702 1.24241 1.40092 1.01649 0.73589 0.73622 0.72197 1.93581 1.68250 1.56233 1.77399 1.93548 1.50322 1.81190 1.69663 1.30298 1.10243 1.15612 1.22924 1.20813 0.99609 0.90846 0.92856 1.21224 0.94016 0.98953 1.01852 1.20708 0.93463 0.95878 0.86628 1.18991 0.94271 0.91183 0.98684 1.20809 1.26036 1.15210 0.93820 0.90664 1.24985 0.95109 0.96633 0.96265 1.69887 1.29376 1.27513 1.26355 0.86794 0.79236 0.79493 0.83919 1.20034 1.21042 1.18928 1.21222 1.00143 0.91992 1.02750 1.20735 0.91285 0.99484 0.92590 0.90660 0.91915 0.91093 0.88612 0.91872 0.87567 0.88838 0.90883 0.90639 0.88965 0.74871 0.84885 0.85164 0.94769 0.95244 0.92328 0.85209 0.85279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 8.40 37.16 0.31 -0.76 16 2 C 0.08 0.68 3.86 -26.16 -0.10 0.58 16 3 H 0.07 0.54 7.48 -51.93 -0.39 0.15 16 4 O -0.37 -3.80 11.19 -35.23 -0.39 -4.20 16 5 C 0.05 0.46 7.73 38.40 0.30 0.76 16 6 C -0.19 -1.84 5.70 -24.53 -0.14 -1.98 16 7 C 0.15 1.37 1.09 -130.29 -0.14 1.23 16 8 C -0.18 -1.62 6.54 37.16 0.24 -1.38 16 9 N -1.11 -10.26 5.60 1.77 0.01 -10.25 16 10 S 2.70 34.63 5.62 -107.50 -0.60 34.03 16 11 O -0.96 -15.02 17.46 -57.17 -1.00 -16.02 16 12 O -0.96 -13.84 13.76 -57.17 -0.79 -14.62 16 13 C -0.70 -9.95 3.54 -39.58 -0.14 -10.09 16 14 C -0.02 -0.32 8.10 -39.58 -0.32 -0.64 16 15 C -0.14 -2.36 9.70 -39.58 -0.38 -2.74 16 16 C 0.03 0.63 5.07 -104.63 -0.53 0.10 16 17 C 0.01 0.13 4.17 -29.03 -0.12 0.00 16 18 C -0.52 -14.00 9.65 -34.44 -0.33 -14.33 16 19 H 0.08 2.24 7.98 -52.49 -0.42 1.82 16 20 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 21 N -0.89 -26.47 13.96 55.43 0.77 -25.70 16 22 Si 0.88 20.26 27.47 -169.99 -4.67 15.59 16 23 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 H -0.26 -5.76 6.54 56.52 0.37 -5.39 16 26 C -0.14 -2.40 9.70 -39.58 -0.38 -2.78 16 27 C -0.02 -0.32 9.28 -39.58 -0.37 -0.68 16 28 H 0.07 0.45 6.87 -51.93 -0.36 0.09 16 29 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.49 6.67 -51.93 -0.35 0.15 16 31 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.11 1.14 3.90 -51.93 -0.20 0.93 16 34 H 0.09 0.85 7.87 -51.93 -0.41 0.44 16 35 H 0.07 0.62 6.84 -51.93 -0.36 0.26 16 36 H 0.07 0.57 6.71 -51.93 -0.35 0.22 16 37 H 0.09 0.98 5.05 -51.93 -0.26 0.71 16 38 H 0.42 2.92 8.25 -34.47 -0.28 2.64 16 39 H 0.13 1.66 6.92 -52.48 -0.36 1.30 16 40 H 0.13 2.05 8.06 -52.49 -0.42 1.63 16 41 H 0.03 0.73 7.14 -51.93 -0.37 0.36 16 42 H 0.03 0.62 7.51 -51.93 -0.39 0.23 16 43 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 44 H 0.13 2.07 8.06 -52.49 -0.42 1.65 16 45 H 0.13 1.63 7.77 -52.49 -0.41 1.23 16 LS Contribution 359.63 15.07 5.42 5.42 Total: -1.00 -32.96 359.63 -9.64 -42.60 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -6.19 Total: 3.96 kcal Atomic # 6 Polarization: -28.60 SS G_CDS: -2.21 Total: -30.81 kcal Atomic # 7 Polarization: -36.73 SS G_CDS: 0.78 Total: -35.95 kcal Atomic # 8 Polarization: -32.66 SS G_CDS: -2.18 Total: -34.84 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -4.67 Total: 15.59 kcal Atomic # 16 Polarization: 34.63 SS G_CDS: -0.60 Total: 34.03 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.96 -9.64 -42.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885102302.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.994 kcal (2) G-P(sol) polarization free energy of solvation -32.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.52 seconds