Wall clock time and date at job start Sat Apr 11 2020 05:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.87406 * 2 1 4 4 O 1.43748 * 109.87809 * 238.84096 * 2 1 3 5 5 C 1.44381 * 106.97480 * 214.06082 * 4 2 1 6 6 C 1.55349 * 103.50115 * 40.09747 * 5 4 2 7 7 C 1.54093 * 109.87993 * 121.01192 * 2 1 3 8 8 C 1.53002 * 110.48906 * 2.64265 * 7 2 1 9 9 N 1.46501 * 110.48916 * 240.12959 * 7 2 1 10 10 S 1.65598 * 120.00104 * 174.50661 * 9 7 2 11 11 O 1.42101 * 106.40443 * 174.83605 * 10 9 7 12 12 O 1.42108 * 106.40326 * 307.75442 * 10 9 7 13 13 C 1.76193 * 107.22017 * 61.29201 * 10 9 7 14 14 C 1.38238 * 120.00328 * 263.34657 * 13 10 9 15 15 C 1.38239 * 120.00086 * 179.76008 * 14 13 10 16 16 C 1.38231 * 119.99972 * 0.51693 * 15 14 13 17 17 C 1.50696 * 120.00038 * 179.71969 * 16 15 14 18 18 C 1.50709 * 109.47389 * 270.01970 * 17 16 15 19 19 H 1.08001 * 119.99203 * 359.97438 * 18 17 16 20 20 C 1.37870 * 120.00272 * 179.97438 * 18 17 16 21 21 N 1.31518 * 120.00001 * 179.97438 * 20 18 17 22 22 Si 1.86805 * 119.99966 * 0.02562 * 20 18 17 23 23 H 1.48495 * 109.47074 * 89.99823 * 22 20 18 24 24 H 1.48499 * 109.46860 * 209.99688 * 22 20 18 25 25 H 1.48503 * 109.46924 * 329.99787 * 22 20 18 26 26 C 1.38241 * 119.99916 * 359.74062 * 16 15 14 27 27 C 1.38232 * 120.00095 * 359.97438 * 26 16 15 28 28 H 1.08996 * 109.46760 * 298.99253 * 1 2 3 29 29 H 1.09000 * 109.46622 * 58.98523 * 1 2 3 30 30 H 1.09001 * 109.47217 * 178.98626 * 1 2 3 31 31 H 1.09003 * 110.61333 * 158.56393 * 5 4 2 32 32 H 1.09001 * 110.62045 * 281.40329 * 5 4 2 33 33 H 1.09000 * 111.00356 * 204.78909 * 6 5 4 34 34 H 1.08995 * 110.96072 * 81.07603 * 6 5 4 35 35 H 1.08997 * 109.47233 * 298.16096 * 8 7 2 36 36 H 1.09006 * 109.46635 * 58.15515 * 8 7 2 37 37 H 1.08994 * 109.47699 * 178.15632 * 8 7 2 38 38 H 0.97001 * 119.99841 * 354.77815 * 9 7 2 39 39 H 1.08003 * 119.99911 * 0.02562 * 14 13 10 40 40 H 1.08002 * 119.99799 * 180.22957 * 15 14 13 41 41 H 1.09002 * 109.47215 * 30.01990 * 17 16 15 42 42 H 1.09000 * 109.47451 * 150.02093 * 17 16 15 43 43 H 0.96999 * 120.00110 * 179.97438 * 21 20 18 44 44 H 1.08000 * 119.99893 * 179.97438 * 26 16 15 45 45 H 1.07996 * 120.00004 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 8 2.0188 -0.6995 -1.1568 5 6 3.2380 -1.3651 -0.7630 6 6 2.9188 -1.8927 0.6629 7 6 2.0540 -0.7466 1.2420 8 6 0.8897 -1.3136 2.0568 9 7 2.8711 0.1446 2.0692 10 16 3.4417 -0.3768 3.5337 11 8 4.2857 0.6550 4.0260 12 8 2.3176 -0.8694 4.2501 13 6 4.4816 -1.7650 3.2241 14 6 3.9780 -3.0467 3.3453 15 6 4.7926 -4.1357 3.0975 16 6 6.1137 -3.9433 2.7391 17 6 7.0034 -5.1307 2.4752 18 6 7.6748 -5.5502 3.7576 19 1 7.4772 -5.0107 4.6720 20 6 8.5411 -6.6227 3.7633 21 7 9.1274 -6.9885 4.8822 22 14 8.8833 -7.5554 2.1813 23 1 10.0422 -6.9411 1.4852 24 1 9.1914 -8.9729 2.4992 25 1 7.6882 -7.4938 1.3020 26 6 6.6188 -2.6617 2.6232 27 6 5.8026 -1.5726 2.8651 28 1 -0.3633 0.4981 0.8989 29 1 -0.3632 0.5295 -0.8808 30 1 -0.3634 -1.0275 -0.0182 31 1 3.4584 -2.1926 -1.4374 32 1 4.0691 -0.6604 -0.7375 33 1 3.8314 -2.0234 1.2444 34 1 2.3520 -2.8226 0.6168 35 1 0.2600 -0.4961 2.4080 36 1 0.3001 -1.9832 1.4306 37 1 1.2795 -1.8653 2.9122 38 1 3.0746 1.0415 1.7608 39 1 2.9469 -3.1971 3.6293 40 1 4.3980 -5.1370 3.1886 41 1 6.4035 -5.9562 2.0922 42 1 7.7612 -4.8605 1.7398 43 1 9.7367 -7.7433 4.8863 44 1 7.6511 -2.5114 2.3435 45 1 6.1974 -0.5714 2.7750 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885102302.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:20 Heat of formation + Delta-G solvation = -113.069319 kcal Electronic energy + Delta-G solvation = -28530.263700 eV Core-core repulsion = 24638.910981 eV Total energy + Delta-G solvation = -3891.352719 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.22298 -40.28676 -38.42248 -37.01985 -36.39911 -35.56535 -33.62508 -32.85621 -32.03687 -31.59776 -29.71304 -28.42576 -25.78584 -25.30451 -23.78694 -23.36477 -22.29181 -21.04796 -20.30665 -19.03277 -18.90263 -18.82199 -17.76473 -16.87335 -16.75857 -16.66941 -16.36804 -15.99797 -15.85008 -15.40467 -15.19779 -15.02083 -14.62717 -14.49060 -14.22002 -14.03970 -13.97633 -13.63422 -13.57590 -13.48453 -13.32809 -13.22018 -13.05847 -12.62721 -12.55218 -12.35147 -12.24469 -12.14685 -12.02161 -11.90947 -11.84104 -11.69846 -11.54377 -11.47094 -10.82896 -10.64916 -10.60156 -9.96159 -9.87366 -8.33756 -6.40981 -0.67180 -0.09913 0.39393 1.36197 1.37874 1.49059 1.90531 2.32315 2.50326 2.73269 2.90899 3.00990 3.25984 3.43115 3.70026 3.79506 3.84227 3.96112 4.03543 4.08135 4.15844 4.25706 4.43482 4.46357 4.47371 4.67950 4.72079 4.76554 4.79442 4.84819 4.86518 4.93822 5.00489 5.08491 5.09096 5.10942 5.17076 5.20487 5.26221 5.30349 5.49555 5.53038 5.78546 5.92033 5.92445 6.03989 6.18817 6.66069 7.23158 8.82712 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016635 B = 0.003389 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.825144 B = 8259.579637 C = 9173.131236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.079 3.921 3 H 0.086 0.914 4 O -0.386 6.386 5 C 0.048 3.952 6 C -0.194 4.194 7 C 0.152 3.848 8 C -0.184 4.184 9 N -1.092 6.092 10 S 2.720 3.280 11 O -0.989 6.989 12 O -0.970 6.970 13 C -0.697 4.697 14 C -0.017 4.017 15 C -0.150 4.150 16 C 0.002 3.998 17 C 0.011 3.989 18 C -0.525 4.525 19 H 0.027 0.973 20 C 0.009 3.991 21 N -0.948 5.948 22 Si 0.952 3.048 23 H -0.265 1.265 24 H -0.285 1.285 25 H -0.240 1.240 26 C -0.152 4.152 27 C -0.020 4.020 28 H 0.087 0.913 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.101 0.899 32 H 0.068 0.932 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.077 0.923 38 H 0.429 0.571 39 H 0.155 0.845 40 H 0.134 0.866 41 H 0.042 0.958 42 H 0.039 0.961 43 H 0.269 0.731 44 H 0.133 0.867 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.624 14.720 -13.428 26.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.020 3.980 3 H 0.104 0.896 4 O -0.305 6.305 5 C -0.028 4.028 6 C -0.233 4.233 7 C 0.063 3.937 8 C -0.242 4.242 9 N -0.855 5.855 10 S 2.811 3.189 11 O -0.979 6.979 12 O -0.960 6.960 13 C -0.784 4.784 14 C -0.036 4.036 15 C -0.169 4.169 16 C 0.002 3.998 17 C -0.026 4.026 18 C -0.563 4.563 19 H 0.045 0.955 20 C -0.188 4.188 21 N -0.588 5.588 22 Si 0.775 3.225 23 H -0.190 1.190 24 H -0.211 1.211 25 H -0.163 1.163 26 C -0.171 4.171 27 C -0.039 4.039 28 H 0.106 0.894 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.119 0.881 32 H 0.086 0.914 33 H 0.113 0.887 34 H 0.116 0.884 35 H 0.099 0.901 36 H 0.109 0.891 37 H 0.096 0.904 38 H 0.267 0.733 39 H 0.173 0.827 40 H 0.152 0.848 41 H 0.060 0.940 42 H 0.057 0.943 43 H 0.077 0.923 44 H 0.151 0.849 45 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -17.841 14.803 -12.677 26.422 hybrid contribution 1.507 -0.930 -0.252 1.789 sum -16.333 13.872 -12.929 25.028 Atomic orbital electron populations 1.22099 0.91923 1.03733 1.03350 1.23032 0.96514 0.95713 0.82781 0.89599 1.88901 1.40309 1.67933 1.33354 1.23638 0.87355 0.96854 0.94965 1.24193 1.02077 0.99102 0.97932 1.21580 0.90798 0.89427 0.91924 1.22797 0.97642 1.02974 1.00758 1.55374 1.66132 1.24899 1.39094 1.00942 0.72816 0.72580 0.72590 1.93549 1.69059 1.56790 1.78540 1.93542 1.50402 1.81318 1.70742 1.30659 1.10403 1.16260 1.21113 1.21018 1.00320 0.90372 0.91862 1.21321 0.93645 0.99946 1.01941 1.20550 0.94128 0.95537 0.89595 1.18830 0.94786 0.92828 0.96153 1.21075 1.26196 1.14596 0.94444 0.95496 1.26002 0.94843 0.97826 1.00171 1.70058 1.30826 1.28643 1.29280 0.85631 0.80135 0.77470 0.79285 1.18979 1.21102 1.16324 1.21320 1.00672 0.91990 1.03073 1.20965 0.91301 0.99921 0.91760 0.89442 0.91554 0.91102 0.88116 0.91353 0.88686 0.88398 0.90143 0.89141 0.90420 0.73273 0.82742 0.84817 0.94024 0.94276 0.92250 0.84933 0.83053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 8.40 71.98 0.60 -1.11 16 2 C 0.08 1.10 3.86 30.96 0.12 1.22 16 3 H 0.09 0.99 7.48 -2.39 -0.02 0.97 16 4 O -0.39 -6.99 11.19 -148.98 -1.67 -8.65 16 5 C 0.05 0.79 7.73 72.79 0.56 1.35 16 6 C -0.19 -3.33 5.70 32.02 0.18 -3.15 16 7 C 0.15 2.35 1.09 4.59 0.01 2.36 16 8 C -0.18 -2.86 6.54 71.98 0.47 -2.39 16 9 N -1.09 -17.44 5.60 -148.31 -0.83 -18.27 16 10 S 2.72 64.58 5.62 -56.49 -0.32 64.27 16 11 O -0.99 -29.04 17.46 -128.00 -2.23 -31.28 16 12 O -0.97 -26.18 13.76 -128.00 -1.76 -27.94 16 13 C -0.70 -18.76 3.54 22.27 0.08 -18.68 16 14 C -0.02 -0.46 8.10 22.27 0.18 -0.28 16 15 C -0.15 -4.94 9.70 22.27 0.22 -4.73 16 16 C 0.00 0.08 5.07 -19.87 -0.10 -0.02 16 17 C 0.01 0.49 4.17 29.10 0.12 0.61 16 18 C -0.53 -29.14 9.65 25.60 0.25 -28.89 16 19 H 0.03 1.69 7.98 -2.91 -0.02 1.67 16 20 C 0.01 0.51 5.47 84.65 0.46 0.97 16 21 N -0.95 -58.21 13.96 21.45 0.30 -57.91 16 22 Si 0.95 41.72 27.47 68.60 1.88 43.61 16 23 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 24 H -0.29 -12.43 7.11 99.48 0.71 -11.73 16 25 H -0.24 -9.48 6.54 99.48 0.65 -8.83 16 26 C -0.15 -5.07 9.70 22.27 0.22 -4.85 16 27 C -0.02 -0.58 9.28 22.27 0.21 -0.37 16 28 H 0.09 0.76 6.87 -2.39 -0.02 0.74 16 29 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.07 0.79 6.67 -2.39 -0.02 0.78 16 31 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.09 1.85 3.90 -2.39 -0.01 1.84 16 34 H 0.10 1.58 7.87 -2.39 -0.02 1.56 16 35 H 0.08 1.13 6.84 -2.39 -0.02 1.11 16 36 H 0.09 1.13 6.71 -2.38 -0.02 1.11 16 37 H 0.08 1.47 5.05 -2.39 -0.01 1.46 16 38 H 0.43 4.79 8.25 -96.75 -0.80 4.00 16 39 H 0.16 3.59 6.92 -2.91 -0.02 3.57 16 40 H 0.13 4.19 8.06 -2.91 -0.02 4.17 16 41 H 0.04 1.73 7.14 -2.39 -0.02 1.72 16 42 H 0.04 1.61 7.51 -2.39 -0.02 1.59 16 43 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 44 H 0.13 4.22 8.06 -2.91 -0.02 4.20 16 45 H 0.15 3.55 7.77 -2.91 -0.02 3.53 16 Total: -1.00 -72.45 359.63 -0.89 -73.33 By element: Atomic # 1 Polarization: 20.63 SS G_CDS: 0.17 Total: 20.79 kcal Atomic # 6 Polarization: -61.53 SS G_CDS: 3.57 Total: -57.96 kcal Atomic # 7 Polarization: -75.64 SS G_CDS: -0.53 Total: -76.18 kcal Atomic # 8 Polarization: -62.21 SS G_CDS: -5.66 Total: -67.87 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 1.88 Total: 43.61 kcal Atomic # 16 Polarization: 64.58 SS G_CDS: -0.32 Total: 64.27 kcal Total: -72.45 -0.89 -73.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885102302.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.735 kcal (2) G-P(sol) polarization free energy of solvation -72.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds