Wall clock time and date at job start Sat Apr 11 2020 05:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.52751 * 2 1 4 4 C 1.53096 * 109.51756 * 120.12448 * 2 1 3 5 5 O 1.42908 * 109.41214 * 177.51101 * 4 2 1 6 6 C 1.42897 * 114.09789 * 298.84248 * 5 4 2 7 7 C 1.53090 * 109.41529 * 61.15937 * 6 5 4 8 8 C 1.53168 * 109.16383 * 302.38908 * 7 6 5 9 9 H 1.09003 * 109.61847 * 176.89455 * 8 7 6 10 10 N 1.46506 * 109.54443 * 297.11286 * 8 7 6 11 11 S 1.65600 * 119.99911 * 264.55530 * 10 8 7 12 12 O 1.42101 * 106.40189 * 178.53708 * 11 10 8 13 13 O 1.42102 * 106.40307 * 311.46141 * 11 10 8 14 14 C 1.76204 * 107.21712 * 64.99891 * 11 10 8 15 15 C 1.38231 * 119.99853 * 269.72438 * 14 11 10 16 16 C 1.38242 * 119.99844 * 179.76660 * 15 14 11 17 17 C 1.38239 * 119.99644 * 0.48505 * 16 15 14 18 18 C 1.50695 * 119.99971 * 179.76642 * 17 16 15 19 19 C 1.50700 * 109.47300 * 270.02709 * 18 17 16 20 20 H 1.07993 * 119.99850 * 359.97438 * 19 18 17 21 21 C 1.37882 * 119.99836 * 179.97438 * 19 18 17 22 22 N 1.31507 * 120.00199 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 119.99695 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47010 * 0.02562 * 23 21 19 25 25 H 1.48496 * 109.46666 * 120.00287 * 23 21 19 26 26 H 1.48501 * 109.46954 * 239.99899 * 23 21 19 27 27 C 1.38233 * 120.00053 * 359.79246 * 17 16 15 28 28 C 1.38232 * 120.00154 * 359.95075 * 27 17 16 29 29 H 1.09001 * 109.47382 * 299.88032 * 1 2 3 30 30 H 1.09003 * 109.46522 * 59.87179 * 1 2 3 31 31 H 1.08998 * 109.47417 * 179.86982 * 1 2 3 32 32 H 1.08993 * 109.48033 * 297.49853 * 4 2 1 33 33 H 1.09001 * 109.48095 * 57.53134 * 4 2 1 34 34 H 1.09002 * 109.48246 * 301.17405 * 6 5 4 35 35 H 1.09005 * 109.48829 * 181.14835 * 6 5 4 36 36 H 1.09002 * 109.52149 * 182.47952 * 7 6 5 37 37 H 1.09007 * 109.52293 * 62.29456 * 7 6 5 38 38 H 0.96994 * 120.00026 * 84.55659 * 10 8 7 39 39 H 1.08000 * 120.00353 * 359.97438 * 15 14 11 40 40 H 1.08000 * 120.00174 * 180.25222 * 16 15 14 41 41 H 1.09004 * 109.47142 * 30.02520 * 18 17 16 42 42 H 1.08996 * 109.47275 * 150.02160 * 18 17 16 43 43 H 0.96997 * 120.00220 * 180.02562 * 22 21 19 44 44 H 1.08001 * 120.00190 * 179.97438 * 27 17 16 45 45 H 1.08008 * 120.00342 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0415 -0.7242 1.2481 5 8 3.4694 -0.7737 1.2168 6 6 4.0042 -1.4817 0.0967 7 6 3.5716 -0.7879 -1.1976 8 6 2.0420 -0.7261 -1.2478 9 1 1.7267 -0.1846 -2.1398 10 7 1.4973 -2.0857 -1.2818 11 16 1.1108 -2.7868 -2.7314 12 8 0.6480 -4.0967 -2.4329 13 8 0.3362 -1.8325 -3.4448 14 6 2.6121 -2.9829 -3.6327 15 6 3.0487 -1.9777 -4.4753 16 6 4.2291 -2.1295 -5.1787 17 6 4.9675 -3.2907 -5.0472 18 6 6.2515 -3.4585 -5.8179 19 6 5.9572 -4.0951 -7.1518 20 1 4.9420 -4.3528 -7.4148 21 6 6.9842 -4.3484 -8.0363 22 7 8.2205 -4.0351 -7.7158 23 14 6.6194 -5.1382 -9.6895 24 1 5.1608 -5.3915 -9.8059 25 1 7.0517 -4.2270 -10.7794 26 1 7.3558 -6.4233 -9.7973 27 6 4.5279 -4.2982 -4.2090 28 6 3.3503 -4.1442 -3.5016 29 1 -0.3634 0.5120 0.8910 30 1 -0.3632 0.5159 -0.8889 31 1 -0.3634 -1.0276 -0.0023 32 1 1.7158 -0.1874 2.1390 33 1 1.6430 -1.7385 1.2687 34 1 3.6314 -2.5060 0.1023 35 1 5.0925 -1.4907 0.1581 36 1 3.9417 -1.3514 -2.0542 37 1 3.9780 0.2232 -1.2224 38 1 1.3631 -2.5752 -0.4553 39 1 2.4695 -1.0724 -4.5814 40 1 4.5723 -1.3426 -5.8338 41 1 6.7114 -2.4827 -5.9746 42 1 6.9333 -4.0950 -5.2540 43 1 8.9428 -4.2130 -8.3382 44 1 5.1046 -5.2056 -4.1065 45 1 3.0070 -4.9312 -2.8463 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885141019.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:26 Heat of formation + Delta-G solvation = -113.839814 kcal Electronic energy + Delta-G solvation = -28119.831358 eV Core-core repulsion = 24228.445228 eV Total energy + Delta-G solvation = -3891.386130 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.16115 -38.86492 -37.20695 -35.94644 -35.80487 -33.73568 -33.00280 -31.60626 -31.06212 -30.62111 -27.47438 -27.01879 -25.18523 -23.76890 -22.62317 -22.37700 -20.96349 -20.38940 -19.36146 -18.04031 -17.45246 -16.49767 -16.42531 -16.36624 -16.08533 -15.46265 -15.13944 -14.91586 -14.63866 -14.45186 -14.40022 -13.86179 -13.73040 -13.18056 -13.02855 -12.91642 -12.57173 -12.35325 -12.32857 -12.14240 -12.08294 -11.98667 -11.83046 -11.73714 -11.52589 -11.42088 -11.21005 -10.97696 -10.96237 -10.60736 -10.54524 -10.53157 -9.88093 -9.76643 -9.66069 -9.57064 -8.64041 -8.57254 -8.42461 -6.20163 -4.25229 0.44571 1.27061 1.74056 2.98825 3.21142 3.29383 3.34461 3.61972 3.70463 4.06113 4.21848 4.34590 4.36973 4.44140 4.52067 4.69721 4.87010 4.96012 5.09703 5.13299 5.18287 5.18940 5.22267 5.26068 5.39238 5.50232 5.56286 5.58866 5.67550 5.74480 5.76874 5.83963 5.86456 5.90355 6.00403 6.19378 6.27611 6.45523 6.72269 6.79197 6.86491 6.92713 7.25078 7.38399 7.54899 7.75080 8.09891 8.79890 9.40067 10.89872 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.019013 B = 0.003010 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.322645 B = 9300.141311 C =10050.544772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.128 4.128 3 H 0.093 0.907 4 C 0.064 3.936 5 O -0.382 6.382 6 C 0.062 3.938 7 C -0.180 4.180 8 C 0.154 3.846 9 H 0.099 0.901 10 N -1.115 6.115 11 S 2.696 3.304 12 O -0.966 6.966 13 O -0.963 6.963 14 C -0.703 4.703 15 C -0.024 4.024 16 C -0.144 4.144 17 C 0.028 3.972 18 C 0.039 3.961 19 C -0.518 4.518 20 H 0.059 0.941 21 C 0.061 3.939 22 N -0.891 5.891 23 Si 0.898 3.102 24 H -0.271 1.271 25 H -0.282 1.282 26 H -0.282 1.282 27 C -0.145 4.145 28 C -0.021 4.021 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.095 0.905 33 H 0.050 0.950 34 H 0.053 0.947 35 H 0.096 0.904 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.413 0.587 39 H 0.129 0.871 40 H 0.128 0.872 41 H 0.035 0.965 42 H 0.035 0.965 43 H 0.264 0.736 44 H 0.128 0.872 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.794 7.928 17.783 22.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.148 4.148 3 H 0.111 0.889 4 C -0.013 4.013 5 O -0.300 6.300 6 C -0.014 4.014 7 C -0.219 4.219 8 C 0.047 3.953 9 H 0.117 0.883 10 N -0.874 5.874 11 S 2.789 3.211 12 O -0.957 6.957 13 O -0.953 6.953 14 C -0.793 4.793 15 C -0.044 4.044 16 C -0.163 4.163 17 C 0.028 3.972 18 C 0.002 3.998 19 C -0.556 4.556 20 H 0.078 0.922 21 C -0.141 4.141 22 N -0.529 5.529 23 Si 0.725 3.275 24 H -0.196 1.196 25 H -0.208 1.208 26 H -0.208 1.208 27 C -0.164 4.164 28 C -0.041 4.041 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.113 0.887 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.114 0.886 36 H 0.107 0.893 37 H 0.103 0.897 38 H 0.248 0.752 39 H 0.146 0.854 40 H 0.146 0.854 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.073 0.927 44 H 0.146 0.854 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -12.333 7.876 17.421 22.751 hybrid contribution 0.543 -0.796 -1.097 1.460 sum -11.790 7.080 16.324 21.345 Atomic orbital electron populations 1.21764 0.93816 1.02546 1.02425 1.21998 0.97040 1.00779 0.95007 0.88878 1.22631 0.81389 0.99566 0.97676 1.87948 1.19897 1.76453 1.45728 1.22541 0.99280 0.94696 0.84912 1.22781 0.95761 1.03332 1.00022 1.20878 0.92764 0.81721 0.99967 0.88258 1.55733 1.82105 1.24808 1.24712 1.01619 0.74079 0.72882 0.72557 1.93570 1.79776 1.38215 1.84106 1.93561 1.67010 1.62789 1.71933 1.30282 1.24940 1.04288 1.19774 1.20760 0.94874 0.96310 0.92424 1.21243 0.95278 0.99035 1.00786 1.21117 0.96596 0.90770 0.88744 1.18542 0.88211 0.98694 0.94328 1.21003 0.94059 1.40865 0.99634 0.92242 1.25002 0.94934 0.95486 0.98707 1.69948 0.99281 1.47269 1.36422 0.86431 0.78652 0.79059 0.83323 1.19566 1.20786 1.20784 1.21244 0.96880 0.99911 0.98339 1.20753 0.93005 0.94181 0.96123 0.92283 0.91655 0.92266 0.88713 0.93217 0.92836 0.88593 0.89294 0.89665 0.75152 0.85358 0.85360 0.94710 0.94729 0.92658 0.85375 0.85341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.02 37.16 0.34 -0.66 16 2 C -0.13 -0.91 2.74 -90.48 -0.25 -1.16 16 3 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 4 C 0.06 0.47 5.94 37.21 0.22 0.69 16 5 O -0.38 -3.66 10.77 -35.23 -0.38 -4.04 16 6 C 0.06 0.56 6.68 37.20 0.25 0.81 16 7 C -0.18 -1.60 5.83 -26.60 -0.16 -1.75 16 8 C 0.15 1.32 2.63 -67.75 -0.18 1.14 16 9 H 0.10 0.87 7.51 -51.93 -0.39 0.48 16 10 N -1.11 -10.31 3.99 -4.73 -0.02 -10.32 16 11 S 2.70 35.25 5.72 -107.50 -0.61 34.63 16 12 O -0.97 -15.04 17.28 -57.17 -0.99 -16.03 16 13 O -0.96 -14.73 16.62 -57.17 -0.95 -15.68 16 14 C -0.70 -10.33 5.02 -39.58 -0.20 -10.53 16 15 C -0.02 -0.37 8.72 -39.58 -0.35 -0.71 16 16 C -0.14 -2.54 9.70 -39.58 -0.38 -2.92 16 17 C 0.03 0.56 5.07 -104.63 -0.53 0.03 16 18 C 0.04 0.93 5.10 -29.04 -0.15 0.78 16 19 C -0.52 -13.83 9.09 -34.44 -0.31 -14.15 16 20 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 21 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 22 N -0.89 -25.24 13.29 55.43 0.74 -24.50 16 23 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 24 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 27 C -0.14 -2.57 9.70 -39.59 -0.38 -2.96 16 28 C -0.02 -0.33 9.52 -39.58 -0.38 -0.70 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.41 7.50 -51.93 -0.39 0.02 16 32 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.05 0.32 6.70 -51.93 -0.35 -0.03 16 34 H 0.05 0.45 7.63 -51.93 -0.40 0.06 16 35 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.09 0.90 6.28 -51.93 -0.33 0.57 16 37 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.41 3.09 7.04 -34.47 -0.24 2.85 16 39 H 0.13 1.66 7.61 -52.49 -0.40 1.27 16 40 H 0.13 2.15 8.06 -52.49 -0.42 1.73 16 41 H 0.03 0.86 8.09 -51.93 -0.42 0.44 16 42 H 0.03 0.86 8.09 -51.93 -0.42 0.44 16 43 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 44 H 0.13 2.18 8.06 -52.49 -0.42 1.76 16 45 H 0.13 1.72 7.62 -52.48 -0.40 1.32 16 LS Contribution 373.82 15.07 5.63 5.63 Total: -1.00 -32.40 373.82 -10.81 -43.21 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -6.65 Total: 1.72 kcal Atomic # 6 Polarization: -27.98 SS G_CDS: -2.55 Total: -30.54 kcal Atomic # 7 Polarization: -35.55 SS G_CDS: 0.72 Total: -34.83 kcal Atomic # 8 Polarization: -33.43 SS G_CDS: -2.32 Total: -35.75 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 16 Polarization: 35.25 SS G_CDS: -0.61 Total: 34.63 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.40 -10.81 -43.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885141019.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.627 kcal (2) G-P(sol) polarization free energy of solvation -32.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds