Wall clock time and date at job start Sat Apr 11 2020 05:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 O 1.20764 * 120.00115 * 2 1 4 4 C 1.50701 * 120.00109 * 179.97438 * 2 1 3 5 5 N 1.46495 * 109.47268 * 180.02562 * 4 2 1 6 6 C 1.46504 * 120.00105 * 274.99774 * 5 4 2 7 7 C 1.53002 * 109.47265 * 300.00082 * 6 5 4 8 8 C 1.53005 * 109.46727 * 60.00186 * 6 5 4 9 9 S 1.65599 * 120.00162 * 95.00146 * 5 4 2 10 10 O 1.42101 * 106.40542 * 156.45978 * 9 5 4 11 11 O 1.42098 * 106.40229 * 23.53741 * 9 5 4 12 12 C 1.76203 * 107.21703 * 269.99860 * 9 5 4 13 13 C 1.38233 * 120.00082 * 90.00045 * 12 9 5 14 14 C 1.38237 * 120.00111 * 179.97438 * 13 12 9 15 15 C 1.38231 * 119.99929 * 0.02562 * 14 13 12 16 16 C 1.50703 * 119.99766 * 179.97438 * 15 14 13 17 17 C 1.50701 * 109.47151 * 90.00279 * 16 15 14 18 18 H 1.08002 * 119.99761 * 359.97438 * 17 16 15 19 19 C 1.37871 * 119.99694 * 180.27762 * 17 16 15 20 20 N 1.31514 * 120.00482 * 359.71466 * 19 17 16 21 21 Si 1.86801 * 119.99746 * 179.72062 * 19 17 16 22 22 H 1.48504 * 109.47209 * 89.99886 * 21 19 17 23 23 H 1.48501 * 109.47358 * 209.99377 * 21 19 17 24 24 H 1.48496 * 109.47341 * 329.99989 * 21 19 17 25 25 C 1.38233 * 120.00119 * 0.25187 * 15 14 13 26 26 C 1.38232 * 119.99735 * 359.49690 * 25 15 14 27 27 H 1.09005 * 109.47468 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47491 * 300.00604 * 1 2 3 29 29 H 1.09004 * 109.47250 * 60.00101 * 1 2 3 30 30 H 1.09003 * 109.46893 * 60.00140 * 4 2 1 31 31 H 1.09008 * 109.47001 * 300.00104 * 4 2 1 32 32 H 1.08995 * 109.47445 * 179.97438 * 6 5 4 33 33 H 1.09006 * 109.46618 * 59.99674 * 7 6 5 34 34 H 1.08995 * 109.47239 * 179.97438 * 7 6 5 35 35 H 1.09001 * 109.46877 * 300.00317 * 7 6 5 36 36 H 1.08990 * 109.47205 * 60.00207 * 8 6 5 37 37 H 1.09004 * 109.46947 * 179.97438 * 8 6 5 38 38 H 1.09000 * 109.46826 * 299.99558 * 8 6 5 39 39 H 1.08000 * 120.00181 * 359.97438 * 13 12 9 40 40 H 1.08003 * 119.99517 * 179.97438 * 14 13 12 41 41 H 1.09000 * 109.47088 * 329.99418 * 16 15 14 42 42 H 1.09007 * 109.46560 * 209.99923 * 16 15 14 43 43 H 0.96995 * 120.00207 * 179.97438 * 20 19 17 44 44 H 1.08002 * 120.00409 * 179.72430 * 25 15 14 45 45 H 1.08008 * 119.99912 * 180.25278 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2604 -1.3051 0.0006 5 7 3.7007 -1.0374 0.0011 6 6 4.4012 -0.7952 -1.2626 7 6 4.2528 -2.0177 -2.1705 8 6 3.7979 0.4295 -1.9535 9 16 4.5371 -1.0087 1.4300 10 8 5.8933 -1.2838 1.1069 11 8 3.7845 -1.7861 2.3512 12 6 4.4941 0.6488 2.0263 13 6 3.4673 1.0584 2.8562 14 6 3.4339 2.3586 3.3244 15 6 4.4270 3.2494 2.9623 16 6 4.3902 4.6670 3.4723 17 6 5.1400 4.7512 4.7768 18 1 5.5971 3.8665 5.1950 19 6 5.2371 5.9563 5.4396 20 7 4.6802 7.0335 4.9305 21 14 6.1599 6.0590 7.0605 22 1 7.5879 6.3713 6.7983 23 1 5.5657 7.1290 7.9015 24 1 6.0599 4.7585 7.7703 25 6 5.4507 2.8414 2.1278 26 6 5.4870 1.5398 1.6638 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.9971 -1.8770 -0.8892 31 1 1.9971 -1.8763 0.8909 32 1 5.4578 -0.6159 -1.0638 33 1 3.1960 -2.1965 -2.3693 34 1 4.7736 -1.8373 -3.1109 35 1 4.6826 -2.8901 -1.6783 36 1 3.9037 1.3003 -1.3067 37 1 4.3194 0.6100 -2.8935 38 1 2.7412 0.2506 -2.1523 39 1 2.6912 0.3626 3.1388 40 1 2.6314 2.6787 3.9725 41 1 3.3549 4.9704 3.6279 42 1 4.8567 5.3281 2.7418 43 1 4.7483 7.8812 5.3970 44 1 6.2242 3.5385 1.8413 45 1 6.2891 1.2199 1.0151 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885209775.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:38 Heat of formation + Delta-G solvation = -89.499528 kcal Electronic energy + Delta-G solvation = -28426.886083 eV Core-core repulsion = 24536.555427 eV Total energy + Delta-G solvation = -3890.330656 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.87706 -38.67345 -37.38814 -36.94028 -35.78858 -33.61317 -32.30713 -31.48364 -30.57027 -30.46622 -27.44381 -27.26468 -26.92473 -23.65943 -22.25834 -21.49098 -20.81647 -20.11786 -18.79905 -18.13227 -17.42324 -16.59735 -16.40327 -16.00952 -15.35106 -15.04056 -15.02479 -14.45839 -14.35744 -14.30587 -14.19270 -13.81182 -13.53884 -13.02730 -12.92637 -12.87504 -12.71071 -12.56069 -12.47070 -12.17895 -12.04439 -11.99306 -11.97256 -11.64097 -11.63294 -11.42708 -11.32189 -11.01859 -10.89811 -10.85996 -10.51438 -10.41121 -10.14978 -9.68101 -9.58702 -9.06585 -8.50951 -8.44777 -8.25691 -6.12983 -4.17754 0.45630 1.46109 1.82333 1.92771 2.86724 3.26694 3.32959 3.37605 3.73843 3.89067 4.18027 4.30975 4.39538 4.47139 4.79157 4.80820 4.91291 5.00027 5.10488 5.15997 5.20058 5.21538 5.27959 5.30702 5.33715 5.42666 5.48456 5.64144 5.71981 5.81544 5.83421 5.89903 6.01444 6.05103 6.24114 6.36999 6.38568 6.43507 6.62395 6.93942 7.00047 7.36973 7.41015 7.53538 7.67277 7.82295 8.18653 8.87100 9.46830 10.97081 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017368 B = 0.003279 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.755190 B = 8536.908013 C = 8982.854568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.317 3.683 3 O -0.420 6.420 4 C 0.064 3.936 5 N -0.983 5.983 6 C 0.140 3.860 7 C -0.159 4.159 8 C -0.160 4.160 9 S 2.691 3.309 10 O -0.961 6.961 11 O -0.966 6.966 12 C -0.691 4.691 13 C -0.016 4.016 14 C -0.142 4.142 15 C 0.027 3.973 16 C 0.040 3.960 17 C -0.516 4.516 18 H 0.059 0.941 19 C 0.060 3.940 20 N -0.892 5.892 21 Si 0.898 3.102 22 H -0.279 1.279 23 H -0.285 1.285 24 H -0.272 1.272 25 C -0.144 4.144 26 C -0.020 4.020 27 H 0.080 0.920 28 H 0.094 0.906 29 H 0.090 0.910 30 H 0.116 0.884 31 H 0.125 0.875 32 H 0.103 0.897 33 H 0.058 0.942 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.077 0.923 37 H 0.060 0.940 38 H 0.051 0.949 39 H 0.121 0.879 40 H 0.125 0.875 41 H 0.034 0.966 42 H 0.034 0.966 43 H 0.264 0.736 44 H 0.126 0.874 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.606 -18.072 -15.608 25.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C 0.188 3.812 3 O -0.291 6.291 4 C -0.062 4.062 5 N -0.818 5.818 6 C 0.035 3.965 7 C -0.218 4.218 8 C -0.218 4.218 9 S 2.786 3.214 10 O -0.952 6.952 11 O -0.957 6.957 12 C -0.781 4.781 13 C -0.036 4.036 14 C -0.161 4.161 15 C 0.027 3.973 16 C 0.003 3.997 17 C -0.554 4.554 18 H 0.077 0.923 19 C -0.142 4.142 20 N -0.530 5.530 21 Si 0.726 3.274 22 H -0.205 1.205 23 H -0.211 1.211 24 H -0.197 1.197 25 C -0.163 4.163 26 C -0.039 4.039 27 H 0.099 0.901 28 H 0.112 0.888 29 H 0.109 0.891 30 H 0.134 0.866 31 H 0.142 0.858 32 H 0.121 0.879 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.096 0.904 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.139 0.861 40 H 0.143 0.857 41 H 0.052 0.948 42 H 0.052 0.948 43 H 0.073 0.927 44 H 0.144 0.856 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -6.888 -18.065 -15.197 24.591 hybrid contribution 0.114 0.927 0.905 1.300 sum -6.774 -17.139 -14.292 23.321 Atomic orbital electron populations 1.22227 0.94247 1.04461 1.05031 1.25242 0.92234 0.91239 0.72449 1.90525 1.71324 1.34395 1.32828 1.21895 0.80382 0.97315 1.06619 1.57527 1.16212 1.86176 1.21884 1.20949 0.96980 0.95493 0.83086 1.22133 1.02179 0.97876 0.99616 1.22277 1.00562 0.98422 1.00554 1.01779 0.73018 0.74499 0.72056 1.93546 1.33419 1.84515 1.83687 1.93527 1.72500 1.68316 1.61324 1.30156 1.06712 1.24037 1.17183 1.20585 0.94512 0.96016 0.92485 1.21142 1.00306 0.93042 1.01624 1.21038 0.90054 0.98483 0.87744 1.18517 0.98702 0.85921 0.96510 1.20985 1.34337 0.94999 1.05082 0.92314 1.25003 0.95557 0.95583 0.98030 1.69951 1.44077 0.99774 1.39242 0.86487 0.79895 0.77907 0.83155 1.20463 1.21062 1.19712 1.21178 0.99619 0.95633 0.99875 1.20665 0.94780 0.92977 0.95497 0.90133 0.88789 0.89134 0.86641 0.85779 0.87944 0.92291 0.91237 0.92002 0.90427 0.92142 0.92945 0.86117 0.85720 0.94826 0.94811 0.92685 0.85579 0.85665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.22 10.33 36.00 0.37 -0.85 16 2 C 0.32 2.91 6.14 -29.04 -0.18 2.73 16 3 O -0.42 -5.52 13.54 6.00 0.08 -5.44 16 4 C 0.06 0.52 5.58 -5.20 -0.03 0.49 16 5 N -0.98 -10.68 2.36 -108.57 -0.26 -10.94 16 6 C 0.14 1.35 3.24 -67.92 -0.22 1.13 16 7 C -0.16 -1.12 9.16 37.16 0.34 -0.78 16 8 C -0.16 -1.53 7.76 37.16 0.29 -1.24 16 9 S 2.69 39.60 5.69 -107.50 -0.61 38.99 16 10 O -0.96 -15.95 15.85 -57.17 -0.91 -16.86 16 11 O -0.97 -15.51 15.83 -57.17 -0.91 -16.42 16 12 C -0.69 -11.74 5.64 -39.58 -0.22 -11.96 16 13 C -0.02 -0.29 9.23 -39.58 -0.37 -0.65 16 14 C -0.14 -2.83 9.70 -39.58 -0.38 -3.21 16 15 C 0.03 0.60 5.07 -104.62 -0.53 0.07 16 16 C 0.04 1.03 5.10 -29.03 -0.15 0.88 16 17 C -0.52 -14.38 9.09 -34.44 -0.31 -14.69 16 18 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 19 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 20 N -0.89 -26.07 13.29 55.43 0.74 -25.33 16 21 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 25 C -0.14 -2.86 9.70 -39.59 -0.38 -3.24 16 26 C -0.02 -0.34 9.52 -39.58 -0.38 -0.72 16 27 H 0.08 0.27 8.00 -51.93 -0.42 -0.14 16 28 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.12 0.54 6.45 -51.93 -0.33 0.21 16 31 H 0.12 0.92 6.91 -51.92 -0.36 0.56 16 32 H 0.10 1.07 6.91 -51.93 -0.36 0.71 16 33 H 0.06 0.33 6.69 -51.93 -0.35 -0.02 16 34 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.08 0.95 6.96 -51.93 -0.36 0.59 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.05 0.46 6.53 -51.93 -0.34 0.12 16 39 H 0.12 1.83 7.62 -52.49 -0.40 1.43 16 40 H 0.12 2.36 8.06 -52.48 -0.42 1.94 16 41 H 0.03 0.89 8.09 -51.93 -0.42 0.47 16 42 H 0.03 0.90 8.08 -51.93 -0.42 0.48 16 43 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 44 H 0.13 2.37 8.06 -52.49 -0.42 1.95 16 45 H 0.13 1.91 7.62 -52.48 -0.40 1.51 16 LS Contribution 380.89 15.07 5.74 5.74 Total: -1.00 -34.41 380.89 -10.05 -44.46 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -6.66 Total: -0.24 kcal Atomic # 6 Polarization: -28.21 SS G_CDS: -2.25 Total: -30.46 kcal Atomic # 7 Polarization: -36.75 SS G_CDS: 0.48 Total: -36.27 kcal Atomic # 8 Polarization: -36.99 SS G_CDS: -1.73 Total: -38.72 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: 39.60 SS G_CDS: -0.61 Total: 38.99 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.41 -10.05 -44.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885209775.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.039 kcal (2) G-P(sol) polarization free energy of solvation -34.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds