Wall clock time and date at job start Sat Apr 11 2020 05:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 O 1.20764 * 120.00115 * 2 1 4 4 C 1.50701 * 120.00109 * 179.97438 * 2 1 3 5 5 N 1.46495 * 109.47268 * 180.02562 * 4 2 1 6 6 C 1.46504 * 120.00105 * 274.99774 * 5 4 2 7 7 C 1.53002 * 109.47265 * 300.00082 * 6 5 4 8 8 C 1.53005 * 109.46727 * 60.00186 * 6 5 4 9 9 S 1.65599 * 120.00162 * 95.00146 * 5 4 2 10 10 O 1.42101 * 106.40542 * 156.45978 * 9 5 4 11 11 O 1.42098 * 106.40229 * 23.53741 * 9 5 4 12 12 C 1.76203 * 107.21703 * 269.99860 * 9 5 4 13 13 C 1.38233 * 120.00082 * 90.00045 * 12 9 5 14 14 C 1.38237 * 120.00111 * 179.97438 * 13 12 9 15 15 C 1.38231 * 119.99929 * 0.02562 * 14 13 12 16 16 C 1.50703 * 119.99766 * 179.97438 * 15 14 13 17 17 C 1.50701 * 109.47151 * 90.00279 * 16 15 14 18 18 H 1.08002 * 119.99761 * 359.97438 * 17 16 15 19 19 C 1.37871 * 119.99694 * 180.27762 * 17 16 15 20 20 N 1.31514 * 120.00482 * 359.71466 * 19 17 16 21 21 Si 1.86801 * 119.99746 * 179.72062 * 19 17 16 22 22 H 1.48504 * 109.47209 * 89.99886 * 21 19 17 23 23 H 1.48501 * 109.47358 * 209.99377 * 21 19 17 24 24 H 1.48496 * 109.47341 * 329.99989 * 21 19 17 25 25 C 1.38233 * 120.00119 * 0.25187 * 15 14 13 26 26 C 1.38232 * 119.99735 * 359.49690 * 25 15 14 27 27 H 1.09005 * 109.47468 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47491 * 300.00604 * 1 2 3 29 29 H 1.09004 * 109.47250 * 60.00101 * 1 2 3 30 30 H 1.09003 * 109.46893 * 60.00140 * 4 2 1 31 31 H 1.09008 * 109.47001 * 300.00104 * 4 2 1 32 32 H 1.08995 * 109.47445 * 179.97438 * 6 5 4 33 33 H 1.09006 * 109.46618 * 59.99674 * 7 6 5 34 34 H 1.08995 * 109.47239 * 179.97438 * 7 6 5 35 35 H 1.09001 * 109.46877 * 300.00317 * 7 6 5 36 36 H 1.08990 * 109.47205 * 60.00207 * 8 6 5 37 37 H 1.09004 * 109.46947 * 179.97438 * 8 6 5 38 38 H 1.09000 * 109.46826 * 299.99558 * 8 6 5 39 39 H 1.08000 * 120.00181 * 359.97438 * 13 12 9 40 40 H 1.08003 * 119.99517 * 179.97438 * 14 13 12 41 41 H 1.09000 * 109.47088 * 329.99418 * 16 15 14 42 42 H 1.09007 * 109.46560 * 209.99923 * 16 15 14 43 43 H 0.96995 * 120.00207 * 179.97438 * 20 19 17 44 44 H 1.08002 * 120.00409 * 179.72430 * 25 15 14 45 45 H 1.08008 * 119.99912 * 180.25278 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2604 -1.3051 0.0006 5 7 3.7007 -1.0374 0.0011 6 6 4.4012 -0.7952 -1.2626 7 6 4.2528 -2.0177 -2.1705 8 6 3.7979 0.4295 -1.9535 9 16 4.5371 -1.0087 1.4300 10 8 5.8933 -1.2838 1.1069 11 8 3.7845 -1.7861 2.3512 12 6 4.4941 0.6488 2.0263 13 6 3.4673 1.0584 2.8562 14 6 3.4339 2.3586 3.3244 15 6 4.4270 3.2494 2.9623 16 6 4.3902 4.6670 3.4723 17 6 5.1400 4.7512 4.7768 18 1 5.5971 3.8665 5.1950 19 6 5.2371 5.9563 5.4396 20 7 4.6802 7.0335 4.9305 21 14 6.1599 6.0590 7.0605 22 1 7.5879 6.3713 6.7983 23 1 5.5657 7.1290 7.9015 24 1 6.0599 4.7585 7.7703 25 6 5.4507 2.8414 2.1278 26 6 5.4870 1.5398 1.6638 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.9971 -1.8770 -0.8892 31 1 1.9971 -1.8763 0.8909 32 1 5.4578 -0.6159 -1.0638 33 1 3.1960 -2.1965 -2.3693 34 1 4.7736 -1.8373 -3.1109 35 1 4.6826 -2.8901 -1.6783 36 1 3.9037 1.3003 -1.3067 37 1 4.3194 0.6100 -2.8935 38 1 2.7412 0.2506 -2.1523 39 1 2.6912 0.3626 3.1388 40 1 2.6314 2.6787 3.9725 41 1 3.3549 4.9704 3.6279 42 1 4.8567 5.3281 2.7418 43 1 4.7483 7.8812 5.3970 44 1 6.2242 3.5385 1.8413 45 1 6.2891 1.2199 1.0151 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885209775.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:36 Heat of formation + Delta-G solvation = -111.224754 kcal Electronic energy + Delta-G solvation = -28427.828160 eV Core-core repulsion = 24536.555427 eV Total energy + Delta-G solvation = -3891.272733 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.64585 -40.20194 -38.53882 -37.81094 -37.03251 -35.61458 -33.32716 -33.02166 -31.96486 -31.19973 -29.26337 -27.97142 -27.59838 -25.60393 -23.75363 -22.54810 -22.17758 -21.00000 -19.72738 -19.22930 -18.69459 -18.53642 -17.49753 -16.93408 -16.69498 -16.53402 -16.02300 -15.85714 -15.68612 -15.31818 -15.12026 -14.94490 -14.64403 -14.47828 -14.27701 -13.95283 -13.65744 -13.58263 -13.43587 -13.40276 -13.25243 -13.15242 -13.04746 -12.95001 -12.71105 -12.69642 -12.67410 -12.38792 -12.15670 -12.09468 -12.06865 -11.73062 -11.65783 -11.45887 -10.93591 -10.67733 -9.98761 -9.94677 -9.78338 -8.28796 -6.42364 -0.70540 -0.02636 0.41166 1.14877 1.36431 1.37136 1.48934 1.82135 2.33250 2.52866 2.77956 3.03190 3.14005 3.27723 3.65722 3.82381 3.91831 4.10316 4.14499 4.21342 4.31770 4.36601 4.43956 4.45060 4.53611 4.59476 4.75011 4.79311 4.82641 4.84271 4.86027 4.87321 5.02487 5.09449 5.19367 5.22360 5.22453 5.30134 5.32493 5.42284 5.49148 5.62532 5.64581 5.84631 5.92652 6.08368 6.69052 6.75346 7.26714 8.81504 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017368 B = 0.003279 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.755190 B = 8536.908013 C = 8982.854568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.317 3.683 3 O -0.468 6.468 4 C 0.054 3.946 5 N -0.974 5.974 6 C 0.134 3.866 7 C -0.155 4.155 8 C -0.154 4.154 9 S 2.711 3.289 10 O -0.979 6.979 11 O -0.976 6.976 12 C -0.691 4.691 13 C -0.012 4.012 14 C -0.153 4.153 15 C -0.004 4.004 16 C 0.051 3.949 17 C -0.534 4.534 18 H 0.054 0.946 19 C 0.009 3.991 20 N -0.926 5.926 21 Si 0.967 3.033 22 H -0.270 1.270 23 H -0.276 1.276 24 H -0.267 1.267 25 C -0.155 4.155 26 C -0.018 4.018 27 H 0.114 0.886 28 H 0.086 0.914 29 H 0.096 0.904 30 H 0.159 0.841 31 H 0.136 0.864 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.059 0.941 36 H 0.044 0.956 37 H 0.075 0.925 38 H 0.061 0.939 39 H 0.147 0.853 40 H 0.125 0.875 41 H 0.010 0.990 42 H 0.010 0.990 43 H 0.268 0.732 44 H 0.126 0.874 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.196 -21.107 -16.583 28.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.191 3.809 3 O -0.342 6.342 4 C -0.071 4.071 5 N -0.811 5.811 6 C 0.029 3.971 7 C -0.214 4.214 8 C -0.212 4.212 9 S 2.803 3.197 10 O -0.969 6.969 11 O -0.966 6.966 12 C -0.778 4.778 13 C -0.031 4.031 14 C -0.172 4.172 15 C -0.005 4.005 16 C 0.014 3.986 17 C -0.572 4.572 18 H 0.072 0.928 19 C -0.190 4.190 20 N -0.565 5.565 21 Si 0.791 3.209 22 H -0.196 1.196 23 H -0.201 1.201 24 H -0.192 1.192 25 C -0.174 4.174 26 C -0.038 4.038 27 H 0.132 0.868 28 H 0.104 0.896 29 H 0.115 0.885 30 H 0.177 0.823 31 H 0.154 0.846 32 H 0.108 0.892 33 H 0.098 0.902 34 H 0.101 0.899 35 H 0.078 0.922 36 H 0.063 0.937 37 H 0.093 0.907 38 H 0.080 0.920 39 H 0.165 0.835 40 H 0.143 0.857 41 H 0.028 0.972 42 H 0.028 0.972 43 H 0.077 0.923 44 H 0.144 0.856 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -7.488 -21.084 -16.156 27.597 hybrid contribution 0.220 1.755 1.057 2.060 sum -7.268 -19.329 -15.099 25.581 Atomic orbital electron populations 1.22262 0.91848 1.06703 1.04903 1.25804 0.93698 0.90888 0.70499 1.90545 1.72428 1.35977 1.35292 1.22348 0.78191 0.97337 1.09243 1.57312 1.17632 1.85479 1.20710 1.21150 0.96229 0.96937 0.82795 1.22125 1.03881 0.96053 0.99307 1.22204 1.01433 0.97119 1.00464 1.01256 0.72756 0.73103 0.72581 1.93522 1.35012 1.84222 1.84143 1.93509 1.72619 1.67862 1.62625 1.30799 1.05529 1.25638 1.15830 1.20816 0.95221 0.95290 0.91805 1.21200 0.99936 0.93985 1.02082 1.20756 0.92397 0.97020 0.90280 1.18230 0.96623 0.88228 0.95511 1.21280 1.34682 0.95075 1.06184 0.92812 1.25904 0.96311 0.95088 1.01716 1.70065 1.45215 1.00376 1.40883 0.85414 0.78713 0.78150 0.78605 1.19576 1.20132 1.19178 1.21233 0.99271 0.96927 0.99982 1.20901 0.95581 0.92037 0.95245 0.86756 0.89559 0.88514 0.82328 0.84595 0.89167 0.90160 0.89870 0.92171 0.93658 0.90659 0.91996 0.83532 0.85716 0.97159 0.97177 0.92327 0.85592 0.83339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.87 10.33 71.23 0.74 -1.13 16 2 C 0.32 5.10 6.14 29.10 0.18 5.28 16 3 O -0.47 -12.04 13.54 -1.46 -0.02 -12.06 16 4 C 0.05 0.67 5.58 85.63 0.48 1.15 16 5 N -0.97 -18.74 2.36 -497.40 -1.17 -19.91 16 6 C 0.13 2.26 3.24 44.99 0.15 2.41 16 7 C -0.15 -1.60 9.16 71.98 0.66 -0.94 16 8 C -0.15 -2.69 7.76 71.98 0.56 -2.13 16 9 S 2.71 74.99 5.69 -56.49 -0.32 74.67 16 10 O -0.98 -30.95 15.85 -128.00 -2.03 -32.98 16 11 O -0.98 -29.03 15.83 -128.00 -2.03 -31.06 16 12 C -0.69 -23.15 5.64 22.27 0.13 -23.02 16 13 C -0.01 -0.42 9.23 22.27 0.21 -0.22 16 14 C -0.15 -6.31 9.70 22.27 0.22 -6.10 16 15 C 0.00 -0.19 5.07 -19.87 -0.10 -0.29 16 16 C 0.05 2.78 5.10 29.10 0.15 2.93 16 17 C -0.53 -31.02 9.09 25.60 0.23 -30.79 16 18 H 0.05 3.10 7.74 -2.91 -0.02 3.07 16 19 C 0.01 0.50 5.46 84.65 0.46 0.96 16 20 N -0.93 -55.84 13.29 21.45 0.28 -55.55 16 21 Si 0.97 44.75 29.54 68.60 2.03 46.77 16 22 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 23 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 24 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 25 C -0.16 -6.43 9.70 22.27 0.22 -6.22 16 26 C -0.02 -0.66 9.52 22.27 0.21 -0.44 16 27 H 0.11 0.27 8.00 -2.38 -0.02 0.26 16 28 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.10 0.82 8.14 -2.38 -0.02 0.80 16 30 H 0.16 0.64 6.45 -2.39 -0.02 0.63 16 31 H 0.14 1.47 6.91 -2.38 -0.02 1.45 16 32 H 0.09 1.75 6.91 -2.39 -0.02 1.73 16 33 H 0.08 0.49 6.69 -2.38 -0.02 0.47 16 34 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.04 1.11 6.96 -2.39 -0.02 1.09 16 37 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 38 H 0.06 0.94 6.53 -2.39 -0.02 0.93 16 39 H 0.15 4.26 7.62 -2.91 -0.02 4.24 16 40 H 0.12 4.97 8.06 -2.91 -0.02 4.94 16 41 H 0.01 0.58 8.09 -2.39 -0.02 0.56 16 42 H 0.01 0.57 8.08 -2.38 -0.02 0.55 16 43 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 44 H 0.13 5.04 8.06 -2.91 -0.02 5.02 16 45 H 0.15 4.47 7.62 -2.91 -0.02 4.44 16 Total: -1.00 -77.36 380.89 2.20 -75.16 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: 0.99 Total: 13.51 kcal Atomic # 6 Polarization: -63.02 SS G_CDS: 4.47 Total: -58.55 kcal Atomic # 7 Polarization: -74.57 SS G_CDS: -0.89 Total: -75.46 kcal Atomic # 8 Polarization: -72.02 SS G_CDS: -4.08 Total: -76.10 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.77 kcal Atomic # 16 Polarization: 74.99 SS G_CDS: -0.32 Total: 74.67 kcal Total: -77.36 2.20 -75.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885209775.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.066 kcal (2) G-P(sol) polarization free energy of solvation -77.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds