Wall clock time and date at job start Sat Apr 11 2020 05:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46980 * 2 1 4 4 N 1.46493 * 109.47264 * 119.99922 * 2 1 3 5 5 C 1.46500 * 120.00029 * 295.41317 * 4 2 1 6 6 C 1.54032 * 113.82022 * 162.37834 * 5 4 2 7 7 O 1.44446 * 85.42987 * 223.23701 * 6 5 4 8 8 C 1.44181 * 93.37541 * 24.09203 * 7 6 5 9 9 S 1.65594 * 120.00334 * 115.41464 * 4 2 1 10 10 O 1.42098 * 106.40262 * 31.11793 * 9 4 2 11 11 O 1.42101 * 106.40933 * 164.03921 * 9 4 2 12 12 C 1.76206 * 107.21747 * 277.58106 * 9 4 2 13 13 C 1.38236 * 119.99820 * 263.18786 * 12 9 4 14 14 C 1.38233 * 120.00207 * 179.76289 * 13 12 9 15 15 C 1.38237 * 119.99648 * 0.49275 * 14 13 12 16 16 C 1.50702 * 120.00015 * 179.76842 * 15 14 13 17 17 C 1.50704 * 109.46773 * 270.01705 * 16 15 14 18 18 H 1.07993 * 120.00268 * 359.97438 * 17 16 15 19 19 C 1.37879 * 119.99665 * 180.02562 * 17 16 15 20 20 N 1.31522 * 120.00045 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99989 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47221 * 59.99424 * 21 19 17 23 23 H 1.48496 * 109.47396 * 180.02562 * 21 19 17 24 24 H 1.48507 * 109.46842 * 299.99987 * 21 19 17 25 25 C 1.38235 * 119.99834 * 359.77778 * 15 14 13 26 26 C 1.38228 * 120.00391 * 359.96948 * 25 15 14 27 27 H 1.08996 * 109.47266 * 308.45496 * 1 2 3 28 28 H 1.09002 * 109.47094 * 68.45870 * 1 2 3 29 29 H 1.09001 * 109.46576 * 188.44947 * 1 2 3 30 30 H 1.08998 * 109.46996 * 239.99986 * 2 1 3 31 31 H 1.09000 * 109.47332 * 183.29451 * 3 2 1 32 32 H 1.09001 * 109.47070 * 303.29304 * 3 2 1 33 33 H 1.08998 * 109.47361 * 63.29483 * 3 2 1 34 34 H 1.08997 * 113.00128 * 294.21215 * 5 4 2 35 35 H 1.09003 * 113.86264 * 337.34766 * 6 5 4 36 36 H 1.09000 * 113.86482 * 109.05060 * 6 5 4 37 37 H 1.09003 * 113.86165 * 221.76809 * 8 7 6 38 38 H 1.08990 * 113.98348 * 90.07553 * 8 7 6 39 39 H 1.08001 * 120.00138 * 359.97438 * 13 12 9 40 40 H 1.07995 * 120.00321 * 180.24865 * 14 13 12 41 41 H 1.09009 * 109.47232 * 30.01458 * 16 15 14 42 42 H 1.08994 * 109.47080 * 150.01407 * 16 15 14 43 43 H 0.96993 * 119.99495 * 179.97438 * 20 19 17 44 44 H 1.08000 * 119.99694 * 179.97438 * 25 15 14 45 45 H 1.08001 * 120.00455 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.7492 -0.1342 2.5244 6 6 1.9311 -1.1462 3.6713 7 8 0.7050 -0.5937 4.1986 8 6 0.2573 -0.1333 2.9077 9 16 2.8746 -2.1000 1.0469 10 8 3.5812 -2.0120 -0.1828 11 8 3.5146 -2.3152 2.2973 12 6 1.7044 -3.4035 0.8561 13 6 1.3197 -4.1529 1.9521 14 6 0.3980 -5.1723 1.8034 15 6 -0.1314 -5.4489 0.5567 16 6 -1.1323 -6.5637 0.3935 17 6 -0.4069 -7.8500 0.0929 18 1 0.6709 -7.8593 0.0262 19 6 -1.1195 -9.0148 -0.0981 20 7 -2.4322 -9.0034 -0.0174 21 14 -0.2205 -10.6094 -0.4700 22 1 0.7001 -10.9314 0.6497 23 1 -1.2068 -11.7076 -0.6322 24 1 0.5601 -10.4566 -1.7242 25 6 0.2576 -4.7032 -0.5403 26 6 1.1753 -3.6804 -0.3906 27 1 -0.3633 0.6391 0.8047 28 1 -0.3633 0.3773 -0.9559 29 1 -0.3632 -1.0166 0.1510 30 1 1.8933 -0.5138 -0.8900 31 1 3.1284 1.4431 -0.0591 32 1 1.6292 1.9731 -0.8590 33 1 1.7257 1.9390 0.9180 34 1 2.2482 0.8196 2.6957 35 1 1.8471 -2.1869 3.3584 36 1 2.8056 -0.9553 4.2933 37 1 -0.1929 0.8593 2.9253 38 1 -0.3393 -0.8625 2.3597 39 1 1.7367 -3.9398 2.9253 40 1 0.0945 -5.7552 2.6604 41 1 -1.7045 -6.6759 1.3145 42 1 -1.8086 -6.3273 -0.4279 43 1 -2.9334 -9.8228 -0.1521 44 1 -0.1557 -4.9196 -1.5143 45 1 1.4795 -3.0980 -1.2478 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885212621.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:43 Heat of formation + Delta-G solvation = -56.076982 kcal Electronic energy + Delta-G solvation = -28536.631567 eV Core-core repulsion = 24647.750221 eV Total energy + Delta-G solvation = -3888.881346 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.78916 -38.87083 -37.59517 -36.85919 -35.89880 -33.72116 -31.82546 -31.61469 -30.65910 -28.31962 -27.67977 -27.44334 -26.56176 -23.76826 -22.44890 -21.85996 -21.30799 -20.80744 -19.04810 -18.15878 -17.45635 -16.96760 -16.50214 -16.46268 -15.45663 -15.34556 -15.16334 -14.64310 -14.43857 -14.40833 -14.25750 -14.04349 -13.75903 -13.32808 -13.00824 -12.88111 -12.85184 -12.40730 -12.27753 -12.11827 -12.03061 -11.96314 -11.81808 -11.75426 -11.52376 -11.51714 -11.14222 -11.02016 -10.94646 -10.89261 -10.56959 -10.51874 -9.97142 -9.76466 -9.67703 -9.29730 -8.64981 -8.55768 -8.43020 -6.19199 -4.24545 0.31832 1.25534 1.73132 2.79696 3.24656 3.29023 3.32279 3.44649 3.62409 3.73743 4.03468 4.22373 4.35396 4.47551 4.69456 4.77042 4.86886 4.87770 5.03157 5.09812 5.15147 5.17324 5.24061 5.31638 5.35933 5.42815 5.50655 5.61644 5.67338 5.71428 5.76879 5.82610 5.85542 5.90671 5.95203 6.01660 6.18628 6.25672 6.32994 6.46799 6.78355 6.86118 7.24966 7.38247 7.55094 7.75512 8.10379 8.79940 9.40564 10.90781 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017914 B = 0.003168 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.615963 B = 8837.522968 C = 8989.739327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.141 3.859 3 C -0.158 4.158 4 N -0.991 5.991 5 C 0.087 3.913 6 C 0.031 3.969 7 O -0.381 6.381 8 C 0.026 3.974 9 S 2.690 3.310 10 O -0.959 6.959 11 O -0.962 6.962 12 C -0.705 4.705 13 C -0.026 4.026 14 C -0.142 4.142 15 C 0.028 3.972 16 C 0.039 3.961 17 C -0.519 4.519 18 H 0.058 0.942 19 C 0.062 3.938 20 N -0.891 5.891 21 Si 0.899 3.101 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.275 1.275 25 C -0.143 4.143 26 C -0.022 4.022 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.100 0.900 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.060 0.940 34 H 0.112 0.888 35 H 0.097 0.903 36 H 0.111 0.889 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.131 0.869 40 H 0.130 0.870 41 H 0.035 0.965 42 H 0.035 0.965 43 H 0.265 0.735 44 H 0.129 0.871 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.793 21.625 2.082 22.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.036 3.964 3 C -0.217 4.217 4 N -0.830 5.830 5 C -0.019 4.019 6 C -0.046 4.046 7 O -0.299 6.299 8 C -0.052 4.052 9 S 2.786 3.214 10 O -0.950 6.950 11 O -0.952 6.952 12 C -0.795 4.795 13 C -0.046 4.046 14 C -0.161 4.161 15 C 0.028 3.972 16 C 0.003 3.997 17 C -0.557 4.557 18 H 0.077 0.923 19 C -0.141 4.141 20 N -0.529 5.529 21 Si 0.726 3.274 22 H -0.200 1.200 23 H -0.211 1.211 24 H -0.200 1.200 25 C -0.162 4.162 26 C -0.042 4.042 27 H 0.082 0.918 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.118 0.882 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.130 0.870 35 H 0.115 0.885 36 H 0.129 0.871 37 H 0.112 0.888 38 H 0.109 0.891 39 H 0.148 0.852 40 H 0.148 0.852 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.075 0.925 44 H 0.147 0.853 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 6.447 21.471 2.354 22.541 hybrid contribution -0.230 -1.311 -0.506 1.424 sum 6.217 20.160 1.848 21.177 Atomic orbital electron populations 1.22398 0.94783 1.03206 1.02735 1.20910 0.94727 0.94357 0.86443 1.22089 1.01860 0.95208 1.02513 1.57849 1.73925 1.39856 1.11366 1.24435 0.96858 0.99630 0.80950 1.24821 0.88960 0.97935 0.92847 1.89793 1.36497 1.77159 1.26453 1.24573 0.95797 1.01019 0.83828 1.01885 0.73754 0.72477 0.73327 1.93554 1.69515 1.86228 1.45677 1.93551 1.73306 1.85333 1.43025 1.30323 1.25215 1.22876 1.01036 1.20807 0.93836 0.93445 0.96492 1.21255 0.98328 0.98127 0.98380 1.21133 0.92439 0.91835 0.91825 1.18541 0.92355 0.89973 0.98857 1.20925 0.93289 0.91870 1.49647 0.92334 1.25001 0.94902 0.99222 0.94952 1.69937 1.05569 1.28417 1.49008 0.86533 0.79371 0.82339 0.79117 1.20014 1.21084 1.20033 1.21237 0.99131 0.96294 0.99571 1.20701 0.93069 0.96014 0.94382 0.91774 0.91235 0.91449 0.88164 0.91996 0.91206 0.92086 0.86995 0.88509 0.87095 0.88769 0.89063 0.85165 0.85249 0.94671 0.94698 0.92542 0.85297 0.85587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.26 8.00 37.16 0.30 -0.96 16 2 C 0.14 1.19 3.25 -67.93 -0.22 0.97 16 3 C -0.16 -1.05 9.13 37.16 0.34 -0.71 16 4 N -0.99 -10.04 2.97 -107.23 -0.32 -10.36 16 5 C 0.09 0.81 3.87 -66.85 -0.26 0.55 16 6 C 0.03 0.35 6.65 37.64 0.25 0.60 16 7 O -0.38 -4.57 12.46 -35.23 -0.44 -5.01 16 8 C 0.03 0.24 6.66 37.64 0.25 0.49 16 9 S 2.69 36.46 5.13 -107.50 -0.55 35.91 16 10 O -0.96 -15.14 16.24 -57.17 -0.93 -16.07 16 11 O -0.96 -14.20 13.28 -57.17 -0.76 -14.96 16 12 C -0.70 -10.71 5.95 -39.58 -0.24 -10.94 16 13 C -0.03 -0.42 8.86 -39.58 -0.35 -0.77 16 14 C -0.14 -2.59 9.70 -39.58 -0.38 -2.97 16 15 C 0.03 0.57 5.07 -104.62 -0.53 0.04 16 16 C 0.04 0.95 5.10 -29.03 -0.15 0.80 16 17 C -0.52 -13.95 9.09 -34.44 -0.31 -14.26 16 18 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 19 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 20 N -0.89 -25.35 13.29 55.43 0.74 -24.61 16 21 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 22 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 23 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 25 C -0.14 -2.56 9.70 -39.59 -0.38 -2.95 16 26 C -0.02 -0.34 9.52 -39.59 -0.38 -0.72 16 27 H 0.06 0.40 6.06 -51.93 -0.31 0.08 16 28 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.58 7.83 -51.93 -0.41 0.18 16 30 H 0.10 0.90 7.06 -51.93 -0.37 0.53 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.35 7.08 -51.93 -0.37 -0.02 16 34 H 0.11 0.82 7.52 -51.93 -0.39 0.43 16 35 H 0.10 1.19 3.49 -51.93 -0.18 1.01 16 36 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.09 0.64 7.88 -51.93 -0.41 0.23 16 38 H 0.09 0.86 6.99 -51.93 -0.36 0.50 16 39 H 0.13 1.82 5.94 -52.49 -0.31 1.50 16 40 H 0.13 2.26 8.06 -52.49 -0.42 1.84 16 41 H 0.04 0.89 8.09 -51.92 -0.42 0.47 16 42 H 0.03 0.87 8.08 -51.93 -0.42 0.45 16 43 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 44 H 0.13 2.18 8.06 -52.49 -0.42 1.76 16 45 H 0.13 1.64 7.78 -52.49 -0.41 1.23 16 LS Contribution 368.78 15.07 5.56 5.56 Total: -1.00 -31.69 368.78 -10.32 -42.01 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -6.44 Total: 0.80 kcal Atomic # 6 Polarization: -27.09 SS G_CDS: -2.16 Total: -29.25 kcal Atomic # 7 Polarization: -35.39 SS G_CDS: 0.42 Total: -34.97 kcal Atomic # 8 Polarization: -33.91 SS G_CDS: -2.13 Total: -36.03 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: 36.46 SS G_CDS: -0.55 Total: 35.91 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.69 -10.32 -42.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885212621.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.062 kcal (2) G-P(sol) polarization free energy of solvation -31.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds