Wall clock time and date at job start Sat Apr 11 2020 05:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46980 * 2 1 4 4 N 1.46493 * 109.47264 * 119.99922 * 2 1 3 5 5 C 1.46500 * 120.00029 * 295.41317 * 4 2 1 6 6 C 1.54032 * 113.82022 * 162.37834 * 5 4 2 7 7 O 1.44446 * 85.42987 * 223.23701 * 6 5 4 8 8 C 1.44181 * 93.37541 * 24.09203 * 7 6 5 9 9 S 1.65594 * 120.00334 * 115.41464 * 4 2 1 10 10 O 1.42098 * 106.40262 * 31.11793 * 9 4 2 11 11 O 1.42101 * 106.40933 * 164.03921 * 9 4 2 12 12 C 1.76206 * 107.21747 * 277.58106 * 9 4 2 13 13 C 1.38236 * 119.99820 * 263.18786 * 12 9 4 14 14 C 1.38233 * 120.00207 * 179.76289 * 13 12 9 15 15 C 1.38237 * 119.99648 * 0.49275 * 14 13 12 16 16 C 1.50702 * 120.00015 * 179.76842 * 15 14 13 17 17 C 1.50704 * 109.46773 * 270.01705 * 16 15 14 18 18 H 1.07993 * 120.00268 * 359.97438 * 17 16 15 19 19 C 1.37879 * 119.99665 * 180.02562 * 17 16 15 20 20 N 1.31522 * 120.00045 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99989 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47221 * 59.99424 * 21 19 17 23 23 H 1.48496 * 109.47396 * 180.02562 * 21 19 17 24 24 H 1.48507 * 109.46842 * 299.99987 * 21 19 17 25 25 C 1.38235 * 119.99834 * 359.77778 * 15 14 13 26 26 C 1.38228 * 120.00391 * 359.96948 * 25 15 14 27 27 H 1.08996 * 109.47266 * 308.45496 * 1 2 3 28 28 H 1.09002 * 109.47094 * 68.45870 * 1 2 3 29 29 H 1.09001 * 109.46576 * 188.44947 * 1 2 3 30 30 H 1.08998 * 109.46996 * 239.99986 * 2 1 3 31 31 H 1.09000 * 109.47332 * 183.29451 * 3 2 1 32 32 H 1.09001 * 109.47070 * 303.29304 * 3 2 1 33 33 H 1.08998 * 109.47361 * 63.29483 * 3 2 1 34 34 H 1.08997 * 113.00128 * 294.21215 * 5 4 2 35 35 H 1.09003 * 113.86264 * 337.34766 * 6 5 4 36 36 H 1.09000 * 113.86482 * 109.05060 * 6 5 4 37 37 H 1.09003 * 113.86165 * 221.76809 * 8 7 6 38 38 H 1.08990 * 113.98348 * 90.07553 * 8 7 6 39 39 H 1.08001 * 120.00138 * 359.97438 * 13 12 9 40 40 H 1.07995 * 120.00321 * 180.24865 * 14 13 12 41 41 H 1.09009 * 109.47232 * 30.01458 * 16 15 14 42 42 H 1.08994 * 109.47080 * 150.01407 * 16 15 14 43 43 H 0.96993 * 119.99495 * 179.97438 * 20 19 17 44 44 H 1.08000 * 119.99694 * 179.97438 * 25 15 14 45 45 H 1.08001 * 120.00455 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.7492 -0.1342 2.5244 6 6 1.9311 -1.1462 3.6713 7 8 0.7050 -0.5937 4.1986 8 6 0.2573 -0.1333 2.9077 9 16 2.8746 -2.1000 1.0469 10 8 3.5812 -2.0120 -0.1828 11 8 3.5146 -2.3152 2.2973 12 6 1.7044 -3.4035 0.8561 13 6 1.3197 -4.1529 1.9521 14 6 0.3980 -5.1723 1.8034 15 6 -0.1314 -5.4489 0.5567 16 6 -1.1323 -6.5637 0.3935 17 6 -0.4069 -7.8500 0.0929 18 1 0.6709 -7.8593 0.0262 19 6 -1.1195 -9.0148 -0.0981 20 7 -2.4322 -9.0034 -0.0174 21 14 -0.2205 -10.6094 -0.4700 22 1 0.7001 -10.9314 0.6497 23 1 -1.2068 -11.7076 -0.6322 24 1 0.5601 -10.4566 -1.7242 25 6 0.2576 -4.7032 -0.5403 26 6 1.1753 -3.6804 -0.3906 27 1 -0.3633 0.6391 0.8047 28 1 -0.3633 0.3773 -0.9559 29 1 -0.3632 -1.0166 0.1510 30 1 1.8933 -0.5138 -0.8900 31 1 3.1284 1.4431 -0.0591 32 1 1.6292 1.9731 -0.8590 33 1 1.7257 1.9390 0.9180 34 1 2.2482 0.8196 2.6957 35 1 1.8471 -2.1869 3.3584 36 1 2.8056 -0.9553 4.2933 37 1 -0.1929 0.8593 2.9253 38 1 -0.3393 -0.8625 2.3597 39 1 1.7367 -3.9398 2.9253 40 1 0.0945 -5.7552 2.6604 41 1 -1.7045 -6.6759 1.3145 42 1 -1.8086 -6.3273 -0.4279 43 1 -2.9334 -9.8228 -0.1521 44 1 -0.1557 -4.9196 -1.5143 45 1 1.4795 -3.0980 -1.2478 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885212621.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:41 Heat of formation + Delta-G solvation = -76.569174 kcal Electronic energy + Delta-G solvation = -28537.520175 eV Core-core repulsion = 24647.750221 eV Total energy + Delta-G solvation = -3889.769954 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 2.33 seconds Orbital eigenvalues (eV) -41.59199 -40.27371 -38.63938 -37.68513 -37.06076 -35.61797 -33.35784 -32.54614 -32.01450 -29.29009 -29.09583 -28.19789 -27.30832 -25.61181 -23.80230 -22.57431 -22.55920 -21.93384 -20.04304 -19.26694 -18.60051 -18.39837 -17.83122 -17.33319 -16.87103 -16.60262 -16.19631 -16.04171 -15.79446 -15.37709 -15.13423 -15.08655 -14.66169 -14.53726 -14.51447 -13.94639 -13.79925 -13.64663 -13.43340 -13.42298 -13.25965 -13.13375 -12.85550 -12.73762 -12.69953 -12.66694 -12.52278 -12.22092 -12.09434 -12.07701 -11.85409 -11.71243 -11.61136 -11.44015 -10.74200 -10.65932 -10.14677 -9.99658 -9.92438 -8.28057 -6.41033 -0.77051 -0.10684 0.35865 1.38007 1.39462 1.47980 1.80682 2.33629 2.50917 2.67603 2.70182 2.92405 3.04630 3.19178 3.70370 3.80877 3.87105 4.05194 4.12470 4.14251 4.23558 4.27621 4.37966 4.42975 4.44689 4.48541 4.68298 4.73455 4.77858 4.85734 4.86555 4.95018 4.97696 5.03337 5.06415 5.13364 5.21668 5.24260 5.24560 5.30818 5.41431 5.45445 5.61473 5.65753 5.83633 5.88795 6.08006 6.70549 7.28141 8.81835 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017914 B = 0.003168 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.615963 B = 8837.522968 C = 8989.739327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.132 3.868 3 C -0.156 4.156 4 N -0.981 5.981 5 C 0.094 3.906 6 C 0.017 3.983 7 O -0.401 6.401 8 C 0.025 3.975 9 S 2.709 3.291 10 O -0.978 6.978 11 O -0.972 6.972 12 C -0.701 4.701 13 C -0.023 4.023 14 C -0.153 4.153 15 C -0.001 4.001 16 C 0.049 3.951 17 C -0.536 4.536 18 H 0.054 0.946 19 C 0.011 3.989 20 N -0.925 5.925 21 Si 0.963 3.037 22 H -0.269 1.269 23 H -0.279 1.279 24 H -0.268 1.268 25 C -0.151 4.151 26 C -0.015 4.015 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.049 0.951 30 H 0.095 0.905 31 H 0.055 0.945 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.141 0.859 35 H 0.083 0.917 36 H 0.117 0.883 37 H 0.123 0.877 38 H 0.085 0.915 39 H 0.151 0.849 40 H 0.127 0.873 41 H 0.012 0.988 42 H 0.015 0.985 43 H 0.268 0.732 44 H 0.132 0.868 45 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.136 23.911 1.797 25.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.028 3.972 3 C -0.215 4.215 4 N -0.822 5.822 5 C -0.011 4.011 6 C -0.059 4.059 7 O -0.320 6.320 8 C -0.053 4.053 9 S 2.802 3.198 10 O -0.968 6.968 11 O -0.963 6.963 12 C -0.788 4.788 13 C -0.042 4.042 14 C -0.172 4.172 15 C -0.002 4.002 16 C 0.012 3.988 17 C -0.573 4.573 18 H 0.072 0.928 19 C -0.188 4.188 20 N -0.564 5.564 21 Si 0.788 3.212 22 H -0.194 1.194 23 H -0.204 1.204 24 H -0.193 1.193 25 C -0.169 4.169 26 C -0.034 4.034 27 H 0.096 0.904 28 H 0.103 0.897 29 H 0.069 0.931 30 H 0.113 0.887 31 H 0.074 0.926 32 H 0.104 0.896 33 H 0.093 0.907 34 H 0.159 0.841 35 H 0.101 0.899 36 H 0.135 0.865 37 H 0.141 0.859 38 H 0.103 0.897 39 H 0.168 0.832 40 H 0.145 0.855 41 H 0.030 0.970 42 H 0.033 0.967 43 H 0.076 0.924 44 H 0.150 0.850 45 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 7.779 23.737 2.062 25.064 hybrid contribution -0.636 -1.859 -0.382 2.001 sum 7.143 21.878 1.680 23.076 Atomic orbital electron populations 1.22406 0.93878 1.02602 1.04182 1.21182 0.95476 0.95320 0.85257 1.22097 1.01502 0.93819 1.04035 1.57644 1.73672 1.38257 1.12619 1.24570 0.97218 0.99874 0.79458 1.24880 0.89123 0.97783 0.94161 1.89780 1.36898 1.77328 1.27992 1.24754 0.95737 1.02264 0.82497 1.01360 0.73361 0.72546 0.72558 1.93533 1.70057 1.86582 1.46632 1.93539 1.73697 1.85734 1.43310 1.30824 1.24328 1.23107 1.00558 1.20994 0.92936 0.92442 0.97830 1.21276 0.99169 0.99096 0.97637 1.20812 0.93401 0.92292 0.93666 1.18260 0.92794 0.91040 0.96738 1.21264 0.93275 0.93386 1.49425 0.92782 1.25858 0.95634 1.02648 0.94709 1.70048 1.06993 1.29388 1.49985 0.85524 0.78314 0.78268 0.79136 1.19440 1.20374 1.19288 1.21295 0.99835 0.96799 0.99003 1.20965 0.91811 0.95089 0.95567 0.90403 0.89748 0.93138 0.88720 0.92616 0.89551 0.90736 0.84138 0.89921 0.86480 0.85886 0.89715 0.83190 0.85502 0.96982 0.96688 0.92353 0.85027 0.82732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.03 8.00 71.98 0.58 -1.45 16 2 C 0.13 1.84 3.25 44.99 0.15 1.98 16 3 C -0.16 -1.49 9.13 71.98 0.66 -0.83 16 4 N -0.98 -17.35 2.97 -504.22 -1.50 -18.85 16 5 C 0.09 1.47 3.87 45.69 0.18 1.64 16 6 C 0.02 0.36 6.65 72.29 0.48 0.84 16 7 O -0.40 -8.92 12.46 -148.98 -1.86 -10.78 16 8 C 0.03 0.39 6.66 72.30 0.48 0.88 16 9 S 2.71 68.42 5.13 -56.49 -0.29 68.13 16 10 O -0.98 -28.89 16.24 -128.00 -2.08 -30.97 16 11 O -0.97 -27.08 13.28 -128.00 -1.70 -28.78 16 12 C -0.70 -20.54 5.95 22.27 0.13 -20.41 16 13 C -0.02 -0.73 8.86 22.27 0.20 -0.53 16 14 C -0.15 -5.74 9.70 22.27 0.22 -5.52 16 15 C 0.00 -0.06 5.07 -19.86 -0.10 -0.16 16 16 C 0.05 2.48 5.10 29.10 0.15 2.63 16 17 C -0.54 -29.76 9.09 25.60 0.23 -29.53 16 18 H 0.05 2.98 7.74 -2.91 -0.02 2.95 16 19 C 0.01 0.59 5.46 84.65 0.46 1.06 16 20 N -0.92 -54.12 13.29 21.45 0.28 -53.84 16 21 Si 0.96 43.49 29.54 68.60 2.03 45.52 16 22 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 23 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 24 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 25 C -0.15 -5.45 9.70 22.27 0.22 -5.24 16 26 C -0.02 -0.46 9.52 22.27 0.21 -0.25 16 27 H 0.08 0.69 6.06 -2.39 -0.01 0.68 16 28 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.05 0.78 7.83 -2.39 -0.02 0.76 16 30 H 0.09 1.45 7.06 -2.39 -0.02 1.43 16 31 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.07 0.52 7.08 -2.39 -0.02 0.50 16 34 H 0.14 1.47 7.52 -2.39 -0.02 1.45 16 35 H 0.08 1.94 3.49 -2.39 -0.01 1.93 16 36 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 37 H 0.12 1.20 7.88 -2.39 -0.02 1.18 16 38 H 0.08 1.44 6.99 -2.39 -0.02 1.42 16 39 H 0.15 4.09 5.94 -2.91 -0.02 4.07 16 40 H 0.13 4.67 8.06 -2.91 -0.02 4.65 16 41 H 0.01 0.65 8.09 -2.38 -0.02 0.63 16 42 H 0.01 0.80 8.08 -2.39 -0.02 0.78 16 43 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 44 H 0.13 4.57 8.06 -2.91 -0.02 4.55 16 45 H 0.16 3.71 7.78 -2.91 -0.02 3.69 16 Total: -1.00 -69.46 368.78 0.12 -69.35 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: 1.00 Total: 15.12 kcal Atomic # 6 Polarization: -59.13 SS G_CDS: 4.24 Total: -54.89 kcal Atomic # 7 Polarization: -71.48 SS G_CDS: -1.21 Total: -72.69 kcal Atomic # 8 Polarization: -64.89 SS G_CDS: -5.63 Total: -70.53 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Atomic # 16 Polarization: 68.42 SS G_CDS: -0.29 Total: 68.13 kcal Total: -69.46 0.12 -69.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885212621.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.224 kcal (2) G-P(sol) polarization free energy of solvation -69.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.33 seconds