Wall clock time and date at job start Sat Apr 11 2020 05:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.89844 * 2 1 4 4 C 1.54374 * 109.83402 * 120.93161 * 2 1 3 5 5 C 1.55308 * 102.25586 * 140.87053 * 4 2 1 6 6 C 1.54951 * 100.93690 * 325.86887 * 5 4 2 7 7 H 1.08995 * 110.39206 * 277.48356 * 6 5 4 8 8 C 1.53003 * 110.30566 * 155.35838 * 6 5 4 9 9 N 1.46495 * 109.47050 * 182.83047 * 8 6 5 10 10 S 1.65596 * 120.00005 * 164.99980 * 9 8 6 11 11 O 1.42097 * 106.40404 * 311.45880 * 10 9 8 12 12 O 1.42109 * 106.40471 * 178.54256 * 10 9 8 13 13 C 1.76192 * 107.21855 * 65.00427 * 10 9 8 14 14 C 1.38235 * 120.00254 * 89.99900 * 13 10 9 15 15 C 1.38239 * 120.00224 * 179.97438 * 14 13 10 16 16 C 1.38231 * 119.99938 * 359.95913 * 15 14 13 17 17 C 1.50696 * 120.00100 * 179.97438 * 16 15 14 18 18 C 1.50706 * 109.47259 * 89.99885 * 17 16 15 19 19 H 1.08005 * 119.99758 * 0.02562 * 18 17 16 20 20 C 1.37871 * 120.00102 * 180.02562 * 18 17 16 21 21 N 1.31516 * 120.00217 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99766 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47057 * 179.97438 * 22 20 18 24 24 H 1.48500 * 109.47389 * 300.00068 * 22 20 18 25 25 H 1.48504 * 109.47102 * 60.00417 * 22 20 18 26 26 C 1.38242 * 120.00142 * 0.27396 * 16 15 14 27 27 C 1.38234 * 120.00128 * 269.97837 * 13 10 9 28 28 O 1.43239 * 109.82950 * 239.07007 * 2 1 3 29 29 H 1.08998 * 109.47398 * 179.48058 * 1 2 3 30 30 H 1.09004 * 109.47151 * 299.47852 * 1 2 3 31 31 H 1.09001 * 109.47621 * 59.47660 * 1 2 3 32 32 H 1.09005 * 110.85083 * 259.06277 * 4 2 1 33 33 H 1.09003 * 110.84478 * 22.47664 * 4 2 1 34 34 H 1.08997 * 111.12749 * 207.95380 * 5 4 2 35 35 H 1.08993 * 111.12591 * 83.78708 * 5 4 2 36 36 H 1.09007 * 109.46829 * 62.83348 * 8 6 5 37 37 H 1.08996 * 109.47129 * 302.83319 * 8 6 5 38 38 H 0.97006 * 120.00217 * 345.00374 * 9 8 6 39 39 H 1.08003 * 120.00208 * 359.97438 * 14 13 10 40 40 H 1.08000 * 119.99698 * 179.97438 * 15 14 13 41 41 H 1.09001 * 109.47545 * 330.00225 * 17 16 15 42 42 H 1.09006 * 109.47511 * 209.99890 * 17 16 15 43 43 H 0.97001 * 119.99646 * 359.97438 * 21 20 18 44 44 H 1.07995 * 120.00242 * 179.73168 * 26 16 15 45 45 H 1.08000 * 120.00143 * 359.97438 * 27 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9010 1.0250 0.0000 4 6 2.0538 -0.7464 1.2456 5 6 3.2731 -1.5221 0.6767 6 6 2.7747 -1.8444 -0.7546 7 1 2.1405 -2.7308 -0.7453 8 6 3.9626 -2.0521 -1.6963 9 7 3.4721 -2.2885 -3.0563 10 16 4.5100 -2.1776 -4.3418 11 8 5.2161 -0.9547 -4.1832 12 8 3.7490 -2.4910 -5.5003 13 6 5.6993 -3.4655 -4.1644 14 6 5.4632 -4.7065 -4.7256 15 6 6.3965 -5.7168 -4.5869 16 6 7.5663 -5.4857 -3.8877 17 6 8.5836 -6.5872 -3.7360 18 6 9.5569 -6.5340 -4.8853 19 1 9.4497 -5.7779 -5.6491 20 6 10.5840 -7.4505 -4.9619 21 7 10.7141 -8.3716 -4.0322 22 14 11.7899 -7.3850 -6.3870 23 1 12.7924 -8.4703 -6.2374 24 1 11.0555 -7.5616 -7.6655 25 1 12.4810 -6.0706 -6.3905 26 6 7.8004 -4.2461 -3.3223 27 6 6.8687 -3.2348 -3.4644 28 8 2.0159 -0.6926 -1.1558 29 1 -0.3634 -1.0276 -0.0093 30 1 -0.3634 0.5057 0.8947 31 1 -0.3634 0.5219 -0.8852 32 1 2.3672 -0.0424 2.0166 33 1 1.2999 -1.4322 1.6324 34 1 3.4573 -2.4348 1.2433 35 1 4.1620 -0.8920 0.6506 36 1 4.5429 -2.9131 -1.3646 37 1 4.5934 -1.1633 -1.6869 38 1 2.5392 -2.5099 -3.2039 39 1 4.5495 -4.8869 -5.2725 40 1 6.2118 -6.6865 -5.0251 41 1 8.0767 -7.5522 -3.7335 42 1 9.1224 -6.4575 -2.7973 43 1 10.0876 -8.4058 -3.2924 44 1 8.7124 -4.0669 -2.7723 45 1 7.0537 -2.2650 -3.0265 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885230177.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:58 Heat of formation + Delta-G solvation = -117.798792 kcal Electronic energy + Delta-G solvation = -26858.807710 eV Core-core repulsion = 22967.249905 eV Total energy + Delta-G solvation = -3891.557805 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 2.27 seconds Orbital eigenvalues (eV) -40.08094 -38.89773 -37.13843 -35.75394 -35.54291 -34.01397 -32.67518 -31.81116 -31.52642 -30.65800 -27.81321 -27.10326 -24.10205 -23.55925 -22.43702 -22.03496 -21.16012 -21.08530 -19.41047 -17.92607 -17.56082 -17.25561 -16.91024 -16.44985 -15.98966 -15.25746 -14.97435 -14.69211 -14.48695 -14.09189 -14.00420 -13.81378 -13.73686 -13.40549 -13.29119 -13.17954 -12.68867 -12.58938 -12.33975 -12.28855 -12.10468 -11.99980 -11.91560 -11.79065 -11.64558 -11.30922 -11.23846 -11.19300 -10.88532 -10.87423 -10.57185 -10.25851 -10.04741 -9.89313 -9.62139 -9.27077 -8.66728 -8.50474 -8.31640 -6.52566 -4.25272 0.49854 1.25425 1.71064 3.01631 3.35826 3.38400 3.39064 3.58073 3.76750 4.01705 4.06937 4.24514 4.33165 4.45102 4.49971 4.67926 4.74563 4.81506 4.92853 5.06225 5.12218 5.14859 5.17722 5.25042 5.25404 5.32102 5.35988 5.50490 5.52246 5.59565 5.67322 5.73793 5.79754 5.81525 5.82067 6.15367 6.23885 6.42641 6.68292 6.71936 6.73600 6.86579 6.95624 7.29999 7.36149 7.91882 8.27581 8.68110 9.45738 10.86839 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.021020 B = 0.002373 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.728984 B =11797.919199 C =12545.259768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.073 3.927 3 H 0.080 0.920 4 C -0.151 4.151 5 C -0.152 4.152 6 C 0.075 3.925 7 H 0.079 0.921 8 C 0.119 3.881 9 N -1.113 6.113 10 S 2.700 3.300 11 O -0.963 6.963 12 O -0.965 6.965 13 C -0.704 4.704 14 C -0.020 4.020 15 C -0.146 4.146 16 C 0.030 3.970 17 C 0.027 3.973 18 C -0.597 4.597 19 H 0.053 0.947 20 C 0.020 3.980 21 N -0.906 5.906 22 Si 1.071 2.929 23 H -0.281 1.281 24 H -0.286 1.286 25 H -0.286 1.286 26 C -0.146 4.146 27 C -0.024 4.024 28 O -0.368 6.368 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.418 0.582 39 H 0.131 0.869 40 H 0.128 0.872 41 H 0.025 0.975 42 H 0.025 0.975 43 H 0.269 0.731 44 H 0.128 0.872 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.197 13.923 11.814 26.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.015 3.985 3 H 0.098 0.902 4 C -0.189 4.189 5 C -0.190 4.190 6 C 0.016 3.984 7 H 0.097 0.903 8 C -0.008 4.008 9 N -0.873 5.873 10 S 2.792 3.208 11 O -0.953 6.953 12 O -0.955 6.955 13 C -0.793 4.793 14 C -0.040 4.040 15 C -0.165 4.165 16 C 0.030 3.970 17 C -0.010 4.010 18 C -0.635 4.635 19 H 0.071 0.929 20 C -0.185 4.185 21 N -0.542 5.542 22 Si 0.898 3.102 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.212 1.212 26 C -0.164 4.164 27 C -0.044 4.044 28 O -0.287 6.287 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.101 0.899 33 H 0.097 0.903 34 H 0.107 0.893 35 H 0.104 0.896 36 H 0.098 0.902 37 H 0.105 0.895 38 H 0.253 0.747 39 H 0.149 0.851 40 H 0.146 0.854 41 H 0.043 0.957 42 H 0.043 0.957 43 H 0.079 0.921 44 H 0.146 0.854 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -17.747 13.925 10.328 24.810 hybrid contribution -1.361 -0.072 1.125 1.767 sum -19.108 13.853 11.453 26.234 Atomic orbital electron populations 1.22143 0.94913 1.02577 1.02357 1.22751 0.94334 0.96517 0.84861 0.90177 1.23190 0.97753 0.99809 0.98106 1.23293 0.98946 1.01705 0.95088 1.23161 0.92229 0.90005 0.92988 0.90308 1.21497 0.95966 1.02172 0.81117 1.55396 1.23454 1.88374 1.20048 1.01523 0.73051 0.73987 0.72208 1.93555 1.73905 1.42008 1.85818 1.93568 1.70595 1.85481 1.45902 1.30413 1.15778 1.15874 1.17204 1.20780 0.98608 0.90938 0.93627 1.21222 0.94449 0.99697 1.01100 1.20864 0.92925 0.95663 0.87564 1.18649 0.92478 0.91378 0.98472 1.21830 1.13732 1.18594 1.09326 0.92903 1.25924 0.98311 0.92508 1.01737 1.70808 1.38356 1.33293 1.11727 0.83504 0.75812 0.76315 0.74532 1.20593 1.21225 1.21232 1.21214 0.99599 0.93152 1.02479 1.20788 0.91588 0.98563 0.93442 1.88514 1.70346 1.40001 1.29870 0.92213 0.91595 0.91839 0.89881 0.90307 0.89345 0.89619 0.90153 0.89510 0.74704 0.85109 0.85420 0.95671 0.95671 0.92056 0.85420 0.85145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.98 9.44 37.16 0.35 -0.63 16 2 C 0.07 0.52 4.16 -26.01 -0.11 0.41 16 3 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 4 C -0.15 -0.79 6.55 -24.79 -0.16 -0.95 16 5 C -0.15 -0.88 6.57 -24.48 -0.16 -1.04 16 6 C 0.08 0.58 3.53 -25.70 -0.09 0.49 16 7 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 8 C 0.12 1.08 5.95 -4.04 -0.02 1.06 16 9 N -1.11 -11.74 5.91 -10.61 -0.06 -11.81 16 10 S 2.70 38.35 5.74 -107.50 -0.62 37.74 16 11 O -0.96 -16.00 16.75 -57.17 -0.96 -16.96 16 12 O -0.97 -16.04 17.28 -57.17 -0.99 -17.03 16 13 C -0.70 -11.06 5.95 -39.58 -0.24 -11.29 16 14 C -0.02 -0.33 9.52 -39.58 -0.38 -0.71 16 15 C -0.15 -2.73 9.70 -39.58 -0.38 -3.11 16 16 C 0.03 0.63 5.07 -104.63 -0.53 0.10 16 17 C 0.03 0.65 4.42 -29.03 -0.13 0.53 16 18 C -0.60 -16.41 9.09 -34.44 -0.31 -16.72 16 19 H 0.05 1.47 7.74 -52.48 -0.41 1.07 16 20 C 0.02 0.55 5.46 -17.82 -0.10 0.45 16 21 N -0.91 -26.65 13.65 55.43 0.76 -25.90 16 22 Si 1.07 24.77 29.90 -169.99 -5.08 19.69 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.29 -6.36 7.11 56.52 0.40 -5.95 16 25 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 26 C -0.15 -2.68 9.70 -39.58 -0.38 -3.07 16 27 C -0.02 -0.39 9.52 -39.58 -0.38 -0.77 16 28 O -0.37 -3.54 10.61 -35.23 -0.37 -3.92 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.08 0.36 7.85 -51.93 -0.41 -0.04 16 34 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.09 0.49 8.06 -51.93 -0.42 0.07 16 36 H 0.08 0.62 8.14 -51.92 -0.42 0.20 16 37 H 0.09 0.83 7.75 -51.93 -0.40 0.42 16 38 H 0.42 3.75 8.65 -34.47 -0.30 3.45 16 39 H 0.13 1.85 7.62 -52.48 -0.40 1.45 16 40 H 0.13 2.28 8.06 -52.49 -0.42 1.86 16 41 H 0.03 0.63 7.95 -51.93 -0.41 0.21 16 42 H 0.03 0.62 7.95 -51.93 -0.41 0.21 16 43 H 0.27 7.79 7.22 -40.82 -0.29 7.50 16 44 H 0.13 2.23 8.06 -52.49 -0.42 1.81 16 45 H 0.13 1.78 7.62 -52.49 -0.40 1.38 16 LS Contribution 385.45 15.07 5.81 5.81 Total: -1.00 -34.65 385.45 -11.42 -46.06 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -6.88 Total: 1.57 kcal Atomic # 6 Polarization: -32.24 SS G_CDS: -3.02 Total: -35.26 kcal Atomic # 7 Polarization: -38.40 SS G_CDS: 0.69 Total: -37.70 kcal Atomic # 8 Polarization: -35.58 SS G_CDS: -2.32 Total: -37.90 kcal Atomic # 14 Polarization: 24.77 SS G_CDS: -5.08 Total: 19.69 kcal Atomic # 16 Polarization: 38.35 SS G_CDS: -0.62 Total: 37.74 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.65 -11.42 -46.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885230177.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.736 kcal (2) G-P(sol) polarization free energy of solvation -34.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.27 seconds