Wall clock time and date at job start Sat Apr 11 2020 05:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.89844 * 2 1 4 4 C 1.54374 * 109.83402 * 120.93161 * 2 1 3 5 5 C 1.55308 * 102.25586 * 140.87053 * 4 2 1 6 6 C 1.54951 * 100.93690 * 325.86887 * 5 4 2 7 7 H 1.08995 * 110.39206 * 277.48356 * 6 5 4 8 8 C 1.53003 * 110.30566 * 155.35838 * 6 5 4 9 9 N 1.46495 * 109.47050 * 182.83047 * 8 6 5 10 10 S 1.65596 * 120.00005 * 164.99980 * 9 8 6 11 11 O 1.42097 * 106.40404 * 311.45880 * 10 9 8 12 12 O 1.42109 * 106.40471 * 178.54256 * 10 9 8 13 13 C 1.76192 * 107.21855 * 65.00427 * 10 9 8 14 14 C 1.38235 * 120.00254 * 89.99900 * 13 10 9 15 15 C 1.38239 * 120.00224 * 179.97438 * 14 13 10 16 16 C 1.38231 * 119.99938 * 359.95913 * 15 14 13 17 17 C 1.50696 * 120.00100 * 179.97438 * 16 15 14 18 18 C 1.50706 * 109.47259 * 89.99885 * 17 16 15 19 19 H 1.08005 * 119.99758 * 0.02562 * 18 17 16 20 20 C 1.37871 * 120.00102 * 180.02562 * 18 17 16 21 21 N 1.31516 * 120.00217 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99766 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47057 * 179.97438 * 22 20 18 24 24 H 1.48500 * 109.47389 * 300.00068 * 22 20 18 25 25 H 1.48504 * 109.47102 * 60.00417 * 22 20 18 26 26 C 1.38242 * 120.00142 * 0.27396 * 16 15 14 27 27 C 1.38234 * 120.00128 * 269.97837 * 13 10 9 28 28 O 1.43239 * 109.82950 * 239.07007 * 2 1 3 29 29 H 1.08998 * 109.47398 * 179.48058 * 1 2 3 30 30 H 1.09004 * 109.47151 * 299.47852 * 1 2 3 31 31 H 1.09001 * 109.47621 * 59.47660 * 1 2 3 32 32 H 1.09005 * 110.85083 * 259.06277 * 4 2 1 33 33 H 1.09003 * 110.84478 * 22.47664 * 4 2 1 34 34 H 1.08997 * 111.12749 * 207.95380 * 5 4 2 35 35 H 1.08993 * 111.12591 * 83.78708 * 5 4 2 36 36 H 1.09007 * 109.46829 * 62.83348 * 8 6 5 37 37 H 1.08996 * 109.47129 * 302.83319 * 8 6 5 38 38 H 0.97006 * 120.00217 * 345.00374 * 9 8 6 39 39 H 1.08003 * 120.00208 * 359.97438 * 14 13 10 40 40 H 1.08000 * 119.99698 * 179.97438 * 15 14 13 41 41 H 1.09001 * 109.47545 * 330.00225 * 17 16 15 42 42 H 1.09006 * 109.47511 * 209.99890 * 17 16 15 43 43 H 0.97001 * 119.99646 * 359.97438 * 21 20 18 44 44 H 1.07995 * 120.00242 * 179.73168 * 26 16 15 45 45 H 1.08000 * 120.00143 * 359.97438 * 27 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9010 1.0250 0.0000 4 6 2.0538 -0.7464 1.2456 5 6 3.2731 -1.5221 0.6767 6 6 2.7747 -1.8444 -0.7546 7 1 2.1405 -2.7308 -0.7453 8 6 3.9626 -2.0521 -1.6963 9 7 3.4721 -2.2885 -3.0563 10 16 4.5100 -2.1776 -4.3418 11 8 5.2161 -0.9547 -4.1832 12 8 3.7490 -2.4910 -5.5003 13 6 5.6993 -3.4655 -4.1644 14 6 5.4632 -4.7065 -4.7256 15 6 6.3965 -5.7168 -4.5869 16 6 7.5663 -5.4857 -3.8877 17 6 8.5836 -6.5872 -3.7360 18 6 9.5569 -6.5340 -4.8853 19 1 9.4497 -5.7779 -5.6491 20 6 10.5840 -7.4505 -4.9619 21 7 10.7141 -8.3716 -4.0322 22 14 11.7899 -7.3850 -6.3870 23 1 12.7924 -8.4703 -6.2374 24 1 11.0555 -7.5616 -7.6655 25 1 12.4810 -6.0706 -6.3905 26 6 7.8004 -4.2461 -3.3223 27 6 6.8687 -3.2348 -3.4644 28 8 2.0159 -0.6926 -1.1558 29 1 -0.3634 -1.0276 -0.0093 30 1 -0.3634 0.5057 0.8947 31 1 -0.3634 0.5219 -0.8852 32 1 2.3672 -0.0424 2.0166 33 1 1.2999 -1.4322 1.6324 34 1 3.4573 -2.4348 1.2433 35 1 4.1620 -0.8920 0.6506 36 1 4.5429 -2.9131 -1.3646 37 1 4.5934 -1.1633 -1.6869 38 1 2.5392 -2.5099 -3.2039 39 1 4.5495 -4.8869 -5.2725 40 1 6.2118 -6.6865 -5.0251 41 1 8.0767 -7.5522 -3.7335 42 1 9.1224 -6.4575 -2.7973 43 1 10.0876 -8.4058 -3.2924 44 1 8.7124 -4.0669 -2.7723 45 1 7.0537 -2.2650 -3.0265 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885230177.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:58 Heat of formation + Delta-G solvation = -141.194111 kcal Electronic energy + Delta-G solvation = -26859.822207 eV Core-core repulsion = 22967.249905 eV Total energy + Delta-G solvation = -3892.572302 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.63031 -40.33427 -38.38520 -37.00650 -36.34652 -35.96310 -33.26608 -33.18911 -32.38071 -32.04377 -28.91348 -28.42064 -25.51846 -24.68730 -23.80646 -22.76717 -22.51613 -21.63728 -20.53164 -19.18756 -18.96674 -18.48806 -17.92221 -17.41780 -16.72402 -16.56391 -16.33897 -15.70237 -15.67137 -15.48144 -15.22686 -15.04700 -14.70896 -14.53554 -14.33533 -13.99435 -13.86196 -13.61255 -13.54808 -13.48622 -13.28863 -13.21440 -13.12517 -12.81616 -12.60448 -12.56449 -12.52579 -12.12449 -11.98094 -11.88540 -11.71816 -11.70075 -11.63947 -11.14613 -10.63283 -10.54747 -10.44594 -10.04193 -9.98658 -8.74477 -6.48469 -0.67209 -0.14729 0.31544 1.50792 1.57405 1.77701 1.97806 2.44409 2.55221 2.70205 2.86858 3.07702 3.26664 3.55725 3.74153 3.81843 3.90449 3.91102 4.01617 4.14224 4.17662 4.28308 4.38104 4.39035 4.46429 4.50047 4.59682 4.70997 4.77644 4.78160 4.81272 4.94607 4.95134 4.96155 5.02429 5.07522 5.09212 5.14802 5.22385 5.27240 5.37489 5.71729 5.77961 5.89357 6.02715 6.07490 6.18744 6.47578 7.30459 8.64800 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.021020 B = 0.002373 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.728984 B =11797.919199 C =12545.259768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.063 3.937 3 H 0.078 0.922 4 C -0.145 4.145 5 C -0.151 4.151 6 C 0.073 3.927 7 H 0.089 0.911 8 C 0.108 3.892 9 N -1.100 6.100 10 S 2.727 3.273 11 O -0.983 6.983 12 O -0.987 6.987 13 C -0.697 4.697 14 C -0.017 4.017 15 C -0.156 4.156 16 C -0.001 4.001 17 C 0.033 3.967 18 C -0.608 4.608 19 H 0.045 0.955 20 C -0.030 4.030 21 N -0.930 5.930 22 Si 1.115 2.885 23 H -0.280 1.280 24 H -0.271 1.271 25 H -0.270 1.270 26 C -0.153 4.153 27 C -0.017 4.017 28 O -0.394 6.394 29 H 0.058 0.942 30 H 0.082 0.918 31 H 0.052 0.948 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.103 0.897 35 H 0.085 0.915 36 H 0.097 0.903 37 H 0.082 0.918 38 H 0.428 0.572 39 H 0.156 0.844 40 H 0.128 0.872 41 H 0.010 0.990 42 H 0.011 0.989 43 H 0.259 0.741 44 H 0.130 0.870 45 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.363 15.328 12.264 28.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.006 3.994 3 H 0.095 0.905 4 C -0.182 4.182 5 C -0.189 4.189 6 C 0.014 3.986 7 H 0.107 0.893 8 C -0.018 4.018 9 N -0.863 5.863 10 S 2.817 3.183 11 O -0.973 6.973 12 O -0.977 6.977 13 C -0.784 4.784 14 C -0.036 4.036 15 C -0.175 4.175 16 C -0.001 4.001 17 C -0.004 4.004 18 C -0.646 4.646 19 H 0.063 0.937 20 C -0.229 4.229 21 N -0.567 5.567 22 Si 0.936 3.064 23 H -0.205 1.205 24 H -0.196 1.196 25 H -0.195 1.195 26 C -0.172 4.172 27 C -0.036 4.036 28 O -0.315 6.315 29 H 0.077 0.923 30 H 0.100 0.900 31 H 0.071 0.929 32 H 0.114 0.886 33 H 0.106 0.894 34 H 0.121 0.879 35 H 0.104 0.896 36 H 0.115 0.885 37 H 0.101 0.899 38 H 0.265 0.735 39 H 0.173 0.827 40 H 0.146 0.854 41 H 0.028 0.972 42 H 0.030 0.970 43 H 0.068 0.932 44 H 0.148 0.852 45 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -18.927 15.326 10.787 26.636 hybrid contribution -1.137 -0.408 1.050 1.600 sum -20.064 14.919 11.837 27.663 Atomic orbital electron populations 1.22125 0.94328 1.02585 1.02652 1.22927 0.94891 0.96503 0.85121 0.90456 1.23182 0.97609 0.99947 0.97488 1.23325 0.99111 1.02493 0.93965 1.23260 0.91806 0.89995 0.93572 0.89305 1.21781 0.96912 1.02764 0.80307 1.55074 1.23272 1.87967 1.19944 1.00710 0.72482 0.72972 0.72150 1.93532 1.74728 1.42754 1.86311 1.93536 1.70812 1.85580 1.47784 1.30800 1.16046 1.15960 1.15643 1.21023 0.98819 0.90490 0.93243 1.21278 0.94435 1.00584 1.01183 1.20624 0.93333 0.95636 0.90548 1.18430 0.92854 0.92289 0.96845 1.22151 1.14432 1.18054 1.09946 0.93695 1.27349 1.00160 0.91975 1.03369 1.70922 1.38785 1.34598 1.12404 0.82951 0.74162 0.77005 0.72289 1.20493 1.19632 1.19546 1.21286 1.00445 0.92923 1.02565 1.21053 0.90812 0.98974 0.92773 1.88482 1.70752 1.40738 1.31494 0.92275 0.89963 0.92933 0.88613 0.89435 0.87852 0.89630 0.88547 0.89926 0.73507 0.82650 0.85434 0.97224 0.97035 0.93165 0.85159 0.82355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.68 9.44 71.98 0.68 -1.00 16 2 C 0.06 0.79 4.16 31.06 0.13 0.92 16 3 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 4 C -0.14 -1.16 6.55 31.85 0.21 -0.95 16 5 C -0.15 -1.37 6.57 32.05 0.21 -1.16 16 6 C 0.07 0.96 3.53 31.26 0.11 1.07 16 7 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 8 C 0.11 1.71 5.95 86.38 0.51 2.22 16 9 N -1.10 -20.70 5.91 -187.49 -1.11 -21.81 16 10 S 2.73 71.63 5.74 -56.49 -0.32 71.31 16 11 O -0.98 -30.64 16.75 -128.00 -2.14 -32.78 16 12 O -0.99 -30.80 17.28 -128.00 -2.21 -33.01 16 13 C -0.70 -20.50 5.95 22.27 0.13 -20.37 16 14 C -0.02 -0.52 9.52 22.27 0.21 -0.31 16 15 C -0.16 -5.81 9.70 22.27 0.22 -5.60 16 16 C 0.00 -0.04 5.07 -19.87 -0.10 -0.14 16 17 C 0.03 1.65 4.42 29.10 0.13 1.78 16 18 C -0.61 -34.14 9.09 25.60 0.23 -33.91 16 19 H 0.04 2.54 7.74 -2.91 -0.02 2.51 16 20 C -0.03 -1.70 5.46 84.65 0.46 -1.24 16 21 N -0.93 -55.96 13.65 21.45 0.29 -55.67 16 22 Si 1.12 49.76 29.90 68.60 2.05 51.81 16 23 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 24 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 25 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 26 C -0.15 -5.59 9.70 22.27 0.22 -5.38 16 27 C -0.02 -0.52 9.52 22.27 0.21 -0.31 16 28 O -0.39 -6.98 10.61 -148.98 -1.58 -8.56 16 29 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.08 0.57 8.14 -2.38 -0.02 0.55 16 31 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.10 0.53 8.14 -2.38 -0.02 0.51 16 33 H 0.09 0.56 7.85 -2.39 -0.02 0.54 16 34 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.09 0.78 8.06 -2.39 -0.02 0.76 16 36 H 0.10 1.22 8.14 -2.38 -0.02 1.21 16 37 H 0.08 1.40 7.75 -2.39 -0.02 1.38 16 38 H 0.43 6.70 8.65 -96.74 -0.84 5.86 16 39 H 0.16 4.05 7.62 -2.91 -0.02 4.03 16 40 H 0.13 4.62 8.06 -2.91 -0.02 4.60 16 41 H 0.01 0.50 7.95 -2.39 -0.02 0.48 16 42 H 0.01 0.60 7.95 -2.38 -0.02 0.58 16 43 H 0.26 15.58 7.22 -92.71 -0.67 14.91 16 44 H 0.13 4.56 8.06 -2.91 -0.02 4.54 16 45 H 0.16 3.88 7.62 -2.91 -0.02 3.86 16 Total: -1.00 -74.66 385.45 -1.21 -75.87 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: 0.25 Total: 17.21 kcal Atomic # 6 Polarization: -67.94 SS G_CDS: 3.56 Total: -64.38 kcal Atomic # 7 Polarization: -76.66 SS G_CDS: -0.82 Total: -77.47 kcal Atomic # 8 Polarization: -68.41 SS G_CDS: -5.94 Total: -74.35 kcal Atomic # 14 Polarization: 49.76 SS G_CDS: 2.05 Total: 51.81 kcal Atomic # 16 Polarization: 71.63 SS G_CDS: -0.32 Total: 71.31 kcal Total: -74.66 -1.21 -75.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885230177.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.324 kcal (2) G-P(sol) polarization free energy of solvation -74.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds