Wall clock time and date at job start Sat Apr 11 2020 05:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47236 * 2 1 4 4 H 1.09000 * 110.27169 * 52.90728 * 3 2 1 5 5 O 1.43643 * 110.39210 * 290.76365 * 3 2 1 6 6 C 1.43244 * 109.97092 * 216.61203 * 5 3 2 7 7 C 1.54377 * 107.58459 * 1.71246 * 6 5 3 8 8 C 1.54944 * 110.31149 * 174.99830 * 3 2 1 9 9 H 1.09006 * 111.12029 * 37.49994 * 8 3 2 10 10 N 1.46496 * 111.12657 * 273.37971 * 8 3 2 11 11 S 1.65607 * 120.00127 * 144.99869 * 10 8 3 12 12 O 1.42107 * 106.40053 * 311.46118 * 11 10 8 13 13 O 1.42099 * 106.40001 * 178.53996 * 11 10 8 14 14 C 1.76198 * 107.21643 * 64.99603 * 11 10 8 15 15 C 1.38235 * 119.99504 * 90.00277 * 14 11 10 16 16 C 1.38243 * 119.99602 * 179.97438 * 15 14 11 17 17 C 1.38232 * 120.00069 * 0.09581 * 16 15 14 18 18 C 1.50701 * 119.99865 * 179.97438 * 17 16 15 19 19 C 1.50694 * 109.47229 * 269.86655 * 18 17 16 20 20 H 1.07999 * 120.00422 * 0.02562 * 19 18 17 21 21 C 1.37875 * 119.99937 * 179.97438 * 19 18 17 22 22 N 1.31509 * 120.00362 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00199 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47101 * 59.99674 * 23 21 19 25 25 H 1.48499 * 109.47600 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.46892 * 300.00101 * 23 21 19 27 27 C 1.38234 * 119.99842 * 359.83724 * 17 16 15 28 28 C 1.38230 * 120.00170 * 269.97984 * 14 11 10 29 29 H 1.08999 * 109.47563 * 60.00109 * 1 2 3 30 30 H 1.08998 * 109.47382 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47267 * 299.99862 * 1 2 3 32 32 H 1.09003 * 109.46899 * 239.99908 * 2 1 3 33 33 H 1.09002 * 109.46902 * 120.00216 * 2 1 3 34 34 H 1.08997 * 109.82741 * 121.22464 * 6 5 3 35 35 H 1.08993 * 109.82802 * 242.20045 * 6 5 3 36 36 H 1.09004 * 110.85153 * 263.16058 * 7 6 5 37 37 H 1.09002 * 110.84772 * 139.54716 * 7 6 5 38 38 H 0.96998 * 120.00240 * 324.99891 * 10 8 3 39 39 H 1.08000 * 120.00616 * 359.70285 * 15 14 11 40 40 H 1.08001 * 119.99556 * 179.97438 * 16 15 14 41 41 H 1.09000 * 109.47219 * 29.86540 * 18 17 16 42 42 H 1.08996 * 109.46919 * 149.86202 * 18 17 16 43 43 H 0.97002 * 120.00859 * 179.97438 * 22 21 19 44 44 H 1.08008 * 119.99453 * 180.11401 * 27 17 16 45 45 H 1.08001 * 120.00350 * 359.97438 * 28 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5845 2.0041 0.8156 5 8 1.7568 2.0735 -1.2590 6 6 2.8317 2.9486 -1.6203 7 6 3.9113 2.8395 -0.5221 8 6 3.5841 1.4670 0.1267 9 1 4.0372 0.6490 -0.4334 10 7 3.9992 1.4345 1.5312 11 16 5.3753 0.6240 1.9694 12 8 5.2997 -0.6557 1.3561 13 8 5.5193 0.8067 3.3712 14 6 6.7333 1.4570 1.2168 15 6 7.3712 2.4842 1.8867 16 6 8.4369 3.1374 1.2964 17 6 8.8635 2.7648 0.0355 18 6 10.0249 3.4773 -0.6082 19 6 9.5154 4.6501 -1.4057 20 1 8.4564 4.8589 -1.4424 21 6 10.4012 5.4571 -2.0876 22 7 11.6908 5.2038 -2.0417 23 14 9.7695 6.9104 -3.0767 24 1 9.0508 7.8473 -2.1760 25 1 10.9140 7.6126 -3.7109 26 1 8.8412 6.4264 -4.1299 27 6 8.2264 1.7367 -0.6338 28 6 7.1610 1.0831 -0.0434 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.2489 2.6450 -2.5804 35 1 2.4687 3.9745 -1.6813 36 1 3.8090 3.6461 0.2039 37 1 4.9099 2.8339 -0.9590 38 1 3.4681 1.8877 2.2046 39 1 7.0342 2.7793 2.8694 40 1 8.9351 3.9402 1.8197 41 1 10.7069 3.8322 0.1645 42 1 10.5517 2.7895 -1.2697 43 1 12.3140 5.7713 -2.5218 44 1 8.5609 1.4443 -1.6183 45 1 6.6631 0.2800 -0.5665 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885237093.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:25 Heat of formation + Delta-G solvation = -114.779677 kcal Electronic energy + Delta-G solvation = -27744.447606 eV Core-core repulsion = 23853.020720 eV Total energy + Delta-G solvation = -3891.426886 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 5.31 seconds Orbital eigenvalues (eV) -40.01967 -38.87191 -37.23164 -35.86698 -35.18882 -33.79001 -33.70075 -31.62226 -30.69878 -30.58757 -27.90030 -27.49151 -23.81912 -23.69118 -22.44217 -21.84149 -21.26387 -20.92446 -19.61029 -18.08963 -17.50504 -17.09304 -16.50060 -16.35041 -15.64242 -15.34122 -15.14023 -14.55634 -14.44096 -14.22644 -14.15421 -13.85644 -13.76415 -13.41915 -13.17870 -13.04509 -12.89233 -12.28791 -12.17881 -12.11591 -12.04106 -11.92651 -11.89247 -11.78472 -11.53888 -11.28370 -11.09885 -11.03294 -10.98406 -10.96217 -10.58923 -10.53675 -9.92508 -9.77806 -9.71438 -9.58966 -8.65972 -8.58897 -8.45037 -6.21921 -4.27674 0.39542 1.25443 1.72629 2.87216 3.20184 3.25737 3.27231 3.56402 3.66461 4.04530 4.17853 4.24370 4.31666 4.45378 4.64810 4.78701 4.86033 4.91235 5.02425 5.10231 5.11514 5.16067 5.17247 5.32253 5.50535 5.58204 5.59541 5.66066 5.74004 5.75641 5.77650 5.84562 5.87137 5.98986 6.07760 6.17897 6.25902 6.43674 6.66437 6.77319 6.78159 6.85186 7.23817 7.37269 7.53916 7.71907 8.07346 8.76439 9.37248 10.88104 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012670 B = 0.003444 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2209.431551 B = 8127.950264 C = 9752.510316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C 0.081 3.919 4 H 0.077 0.923 5 O -0.374 6.374 6 C 0.052 3.948 7 C -0.177 4.177 8 C 0.121 3.879 9 H 0.113 0.887 10 N -1.106 6.106 11 S 2.697 3.303 12 O -0.962 6.962 13 O -0.964 6.964 14 C -0.703 4.703 15 C -0.020 4.020 16 C -0.145 4.145 17 C 0.029 3.971 18 C 0.039 3.961 19 C -0.518 4.518 20 H 0.058 0.942 21 C 0.061 3.939 22 N -0.890 5.890 23 Si 0.899 3.101 24 H -0.275 1.275 25 H -0.285 1.285 26 H -0.275 1.275 27 C -0.145 4.145 28 C -0.025 4.025 29 H 0.061 0.939 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.418 0.582 39 H 0.129 0.871 40 H 0.129 0.871 41 H 0.035 0.965 42 H 0.035 0.965 43 H 0.265 0.735 44 H 0.129 0.871 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.321 -7.216 4.875 20.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C 0.022 3.978 4 H 0.094 0.906 5 O -0.293 6.293 6 C -0.025 4.025 7 C -0.216 4.216 8 C 0.012 3.988 9 H 0.131 0.869 10 N -0.864 5.864 11 S 2.790 3.210 12 O -0.952 6.952 13 O -0.954 6.954 14 C -0.793 4.793 15 C -0.040 4.040 16 C -0.164 4.164 17 C 0.028 3.972 18 C 0.002 3.998 19 C -0.556 4.556 20 H 0.076 0.924 21 C -0.141 4.141 22 N -0.528 5.528 23 Si 0.726 3.274 24 H -0.201 1.201 25 H -0.211 1.211 26 H -0.200 1.200 27 C -0.163 4.163 28 C -0.045 4.045 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.105 0.895 37 H 0.113 0.887 38 H 0.252 0.748 39 H 0.147 0.853 40 H 0.147 0.853 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.075 0.925 44 H 0.147 0.853 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -18.198 -8.038 5.089 20.535 hybrid contribution 0.239 1.816 -0.632 1.938 sum -17.959 -6.221 4.456 19.522 Atomic orbital electron populations 1.21718 0.95129 1.01627 1.02160 1.21716 0.96849 0.94355 1.03410 1.23187 0.92735 0.94568 0.87329 0.90552 1.88451 1.42611 1.60558 1.37685 1.23091 0.86886 0.94569 0.97963 1.23643 1.01160 0.97855 0.98972 1.22510 0.96186 0.98632 0.81425 0.86869 1.55485 1.43140 1.73269 1.14484 1.01613 0.72698 0.73578 0.73138 1.93568 1.86304 1.37167 1.78168 1.93575 1.85975 1.86435 1.29441 1.30259 1.23595 1.16631 1.08835 1.20760 0.93789 0.91612 0.97840 1.21253 0.98008 1.00941 0.96189 1.21119 0.94502 0.89800 0.91752 1.18543 0.90162 0.95079 0.96033 1.20889 0.93511 1.10957 1.30290 0.92394 1.25005 0.94810 0.97853 0.96442 1.69929 1.01527 1.39035 1.42341 0.86548 0.78394 0.82222 0.80244 1.20075 1.21083 1.20046 1.21242 0.96977 0.97413 1.00716 1.20767 0.95253 0.96371 0.92083 0.92026 0.92674 0.92918 0.90722 0.90305 0.90679 0.91012 0.89474 0.88651 0.74766 0.85289 0.85343 0.94701 0.94685 0.92505 0.85325 0.85366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.85 37.16 0.37 -0.79 16 2 C -0.13 -1.09 5.67 -26.73 -0.15 -1.24 16 3 C 0.08 0.74 3.08 -25.71 -0.08 0.66 16 4 H 0.08 0.61 8.05 -51.93 -0.42 0.20 16 5 O -0.37 -3.96 10.81 -35.23 -0.38 -4.34 16 6 C 0.05 0.49 7.79 37.88 0.30 0.79 16 7 C -0.18 -1.71 6.72 -24.79 -0.17 -1.88 16 8 C 0.12 1.16 3.18 -65.69 -0.21 0.95 16 9 H 0.11 1.11 7.52 -51.93 -0.39 0.72 16 10 N -1.11 -10.43 5.62 -2.99 -0.02 -10.45 16 11 S 2.70 34.75 5.71 -107.50 -0.61 34.14 16 12 O -0.96 -14.40 16.69 -57.17 -0.95 -15.36 16 13 O -0.96 -14.58 17.28 -57.17 -0.99 -15.57 16 14 C -0.70 -10.31 5.95 -39.59 -0.24 -10.55 16 15 C -0.02 -0.32 9.52 -39.58 -0.38 -0.69 16 16 C -0.14 -2.57 9.70 -39.58 -0.38 -2.96 16 17 C 0.03 0.57 5.07 -104.63 -0.53 0.04 16 18 C 0.04 0.92 5.10 -29.04 -0.15 0.77 16 19 C -0.52 -13.50 9.09 -34.44 -0.31 -13.81 16 20 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 21 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 22 N -0.89 -25.03 13.29 55.43 0.74 -24.30 16 23 Si 0.90 20.39 29.54 -169.99 -5.02 15.37 16 24 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 25 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 26 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 27 C -0.14 -2.53 9.70 -39.58 -0.38 -2.92 16 28 C -0.03 -0.38 9.52 -39.59 -0.38 -0.76 16 29 H 0.06 0.52 7.99 -51.93 -0.42 0.11 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.42 2.96 8.82 -34.47 -0.30 2.65 16 39 H 0.13 1.71 7.62 -52.49 -0.40 1.31 16 40 H 0.13 2.18 8.06 -52.49 -0.42 1.76 16 41 H 0.03 0.87 8.08 -51.93 -0.42 0.45 16 42 H 0.03 0.88 8.09 -51.93 -0.42 0.46 16 43 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 44 H 0.13 2.15 8.06 -52.48 -0.42 1.73 16 45 H 0.13 1.65 7.62 -52.49 -0.40 1.25 16 LS Contribution 386.77 15.07 5.83 5.83 Total: -1.00 -31.66 386.77 -11.14 -42.80 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -6.94 Total: 2.74 kcal Atomic # 6 Polarization: -28.07 SS G_CDS: -2.79 Total: -30.86 kcal Atomic # 7 Polarization: -35.46 SS G_CDS: 0.72 Total: -34.74 kcal Atomic # 8 Polarization: -32.95 SS G_CDS: -2.32 Total: -35.27 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Atomic # 16 Polarization: 34.75 SS G_CDS: -0.61 Total: 34.14 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.66 -11.14 -42.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885237093.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.979 kcal (2) G-P(sol) polarization free energy of solvation -31.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.31 seconds