Wall clock time and date at job start Sat Apr 11 2020 05:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47236 * 2 1 4 4 H 1.09000 * 110.27169 * 52.90728 * 3 2 1 5 5 O 1.43643 * 110.39210 * 290.76365 * 3 2 1 6 6 C 1.43244 * 109.97092 * 216.61203 * 5 3 2 7 7 C 1.54377 * 107.58459 * 1.71246 * 6 5 3 8 8 C 1.54944 * 110.31149 * 174.99830 * 3 2 1 9 9 H 1.09006 * 111.12029 * 37.49994 * 8 3 2 10 10 N 1.46496 * 111.12657 * 273.37971 * 8 3 2 11 11 S 1.65607 * 120.00127 * 144.99869 * 10 8 3 12 12 O 1.42107 * 106.40053 * 311.46118 * 11 10 8 13 13 O 1.42099 * 106.40001 * 178.53996 * 11 10 8 14 14 C 1.76198 * 107.21643 * 64.99603 * 11 10 8 15 15 C 1.38235 * 119.99504 * 90.00277 * 14 11 10 16 16 C 1.38243 * 119.99602 * 179.97438 * 15 14 11 17 17 C 1.38232 * 120.00069 * 0.09581 * 16 15 14 18 18 C 1.50701 * 119.99865 * 179.97438 * 17 16 15 19 19 C 1.50694 * 109.47229 * 269.86655 * 18 17 16 20 20 H 1.07999 * 120.00422 * 0.02562 * 19 18 17 21 21 C 1.37875 * 119.99937 * 179.97438 * 19 18 17 22 22 N 1.31509 * 120.00362 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00199 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47101 * 59.99674 * 23 21 19 25 25 H 1.48499 * 109.47600 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.46892 * 300.00101 * 23 21 19 27 27 C 1.38234 * 119.99842 * 359.83724 * 17 16 15 28 28 C 1.38230 * 120.00170 * 269.97984 * 14 11 10 29 29 H 1.08999 * 109.47563 * 60.00109 * 1 2 3 30 30 H 1.08998 * 109.47382 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47267 * 299.99862 * 1 2 3 32 32 H 1.09003 * 109.46899 * 239.99908 * 2 1 3 33 33 H 1.09002 * 109.46902 * 120.00216 * 2 1 3 34 34 H 1.08997 * 109.82741 * 121.22464 * 6 5 3 35 35 H 1.08993 * 109.82802 * 242.20045 * 6 5 3 36 36 H 1.09004 * 110.85153 * 263.16058 * 7 6 5 37 37 H 1.09002 * 110.84772 * 139.54716 * 7 6 5 38 38 H 0.96998 * 120.00240 * 324.99891 * 10 8 3 39 39 H 1.08000 * 120.00616 * 359.70285 * 15 14 11 40 40 H 1.08001 * 119.99556 * 179.97438 * 16 15 14 41 41 H 1.09000 * 109.47219 * 29.86540 * 18 17 16 42 42 H 1.08996 * 109.46919 * 149.86202 * 18 17 16 43 43 H 0.97002 * 120.00859 * 179.97438 * 22 21 19 44 44 H 1.08008 * 119.99453 * 180.11401 * 27 17 16 45 45 H 1.08001 * 120.00350 * 359.97438 * 28 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5845 2.0041 0.8156 5 8 1.7568 2.0735 -1.2590 6 6 2.8317 2.9486 -1.6203 7 6 3.9113 2.8395 -0.5221 8 6 3.5841 1.4670 0.1267 9 1 4.0372 0.6490 -0.4334 10 7 3.9992 1.4345 1.5312 11 16 5.3753 0.6240 1.9694 12 8 5.2997 -0.6557 1.3561 13 8 5.5193 0.8067 3.3712 14 6 6.7333 1.4570 1.2168 15 6 7.3712 2.4842 1.8867 16 6 8.4369 3.1374 1.2964 17 6 8.8635 2.7648 0.0355 18 6 10.0249 3.4773 -0.6082 19 6 9.5154 4.6501 -1.4057 20 1 8.4564 4.8589 -1.4424 21 6 10.4012 5.4571 -2.0876 22 7 11.6908 5.2038 -2.0417 23 14 9.7695 6.9104 -3.0767 24 1 9.0508 7.8473 -2.1760 25 1 10.9140 7.6126 -3.7109 26 1 8.8412 6.4264 -4.1299 27 6 8.2264 1.7367 -0.6338 28 6 7.1610 1.0831 -0.0434 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.2489 2.6450 -2.5804 35 1 2.4687 3.9745 -1.6813 36 1 3.8090 3.6461 0.2039 37 1 4.9099 2.8339 -0.9590 38 1 3.4681 1.8877 2.2046 39 1 7.0342 2.7793 2.8694 40 1 8.9351 3.9402 1.8197 41 1 10.7069 3.8322 0.1645 42 1 10.5517 2.7895 -1.2697 43 1 12.3140 5.7713 -2.5218 44 1 8.5609 1.4443 -1.6183 45 1 6.6631 0.2800 -0.5665 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885237093.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:21 Heat of formation + Delta-G solvation = -135.401915 kcal Electronic energy + Delta-G solvation = -27745.341853 eV Core-core repulsion = 23853.020720 eV Total energy + Delta-G solvation = -3892.321133 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 2.13 seconds Orbital eigenvalues (eV) -40.77223 -40.22988 -38.37139 -37.01176 -36.01480 -35.58553 -34.41296 -33.31584 -31.96678 -31.42158 -29.24595 -28.60039 -25.59073 -24.41725 -23.74039 -22.63251 -22.48455 -21.91613 -20.62583 -19.17435 -18.58566 -18.50226 -17.95346 -17.16622 -16.84811 -16.70895 -16.17158 -15.98018 -15.76131 -15.30737 -14.91612 -14.86097 -14.62807 -14.49923 -14.43840 -14.13687 -13.87470 -13.83069 -13.47016 -13.41057 -13.25731 -13.19025 -13.07830 -12.64470 -12.64014 -12.60554 -12.59179 -12.13389 -12.03874 -11.97043 -11.79131 -11.72959 -11.67926 -11.44049 -10.64135 -10.57984 -10.41517 -9.95827 -9.94715 -8.25568 -6.38754 -0.68267 -0.06650 0.40201 1.40039 1.41545 1.49853 1.88445 2.35111 2.54142 2.76321 2.86692 3.07436 3.23757 3.50358 3.58434 3.85457 3.91977 3.98012 4.02758 4.16162 4.17673 4.25174 4.28329 4.44038 4.47862 4.48301 4.63550 4.81353 4.82804 4.89261 4.90924 4.91795 5.04432 5.10291 5.15749 5.16286 5.24861 5.26901 5.30706 5.34058 5.46525 5.67802 5.86743 5.92255 5.98059 6.06663 6.09906 6.73330 7.30517 8.84573 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012670 B = 0.003444 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2209.431551 B = 8127.950264 C = 9752.510316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.129 4.129 3 C 0.082 3.918 4 H 0.092 0.908 5 O -0.388 6.388 6 C 0.050 3.950 7 C -0.176 4.176 8 C 0.118 3.882 9 H 0.112 0.888 10 N -1.089 6.089 11 S 2.726 3.274 12 O -0.977 6.977 13 O -0.980 6.980 14 C -0.699 4.699 15 C -0.016 4.016 16 C -0.155 4.155 17 C 0.000 4.000 18 C 0.046 3.954 19 C -0.530 4.530 20 H 0.060 0.940 21 C 0.007 3.993 22 N -0.929 5.929 23 Si 0.965 3.035 24 H -0.267 1.267 25 H -0.284 1.284 26 H -0.266 1.266 27 C -0.153 4.153 28 C -0.018 4.018 29 H 0.051 0.949 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.095 0.905 37 H 0.083 0.917 38 H 0.432 0.568 39 H 0.155 0.845 40 H 0.128 0.872 41 H 0.010 0.990 42 H 0.010 0.990 43 H 0.266 0.734 44 H 0.129 0.871 45 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.079 -7.244 5.430 22.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.167 4.167 3 C 0.023 3.977 4 H 0.109 0.891 5 O -0.307 6.307 6 C -0.026 4.026 7 C -0.216 4.216 8 C 0.009 3.991 9 H 0.130 0.870 10 N -0.851 5.851 11 S 2.816 3.184 12 O -0.967 6.967 13 O -0.971 6.971 14 C -0.786 4.786 15 C -0.035 4.035 16 C -0.173 4.173 17 C -0.001 4.001 18 C 0.010 3.990 19 C -0.567 4.567 20 H 0.079 0.921 21 C -0.192 4.192 22 N -0.568 5.568 23 Si 0.789 3.211 24 H -0.192 1.192 25 H -0.209 1.209 26 H -0.190 1.190 27 C -0.171 4.171 28 C -0.037 4.037 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.102 0.898 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.113 0.887 37 H 0.102 0.898 38 H 0.270 0.730 39 H 0.173 0.827 40 H 0.146 0.854 41 H 0.028 0.972 42 H 0.029 0.971 43 H 0.075 0.925 44 H 0.147 0.853 45 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -20.951 -8.057 5.651 23.147 hybrid contribution 1.004 1.740 -0.755 2.146 sum -19.947 -6.317 4.896 21.489 Atomic orbital electron populations 1.21698 0.94493 1.02132 1.02102 1.21764 0.97464 0.94093 1.03362 1.23268 0.92145 0.94973 0.87301 0.89062 1.88443 1.43017 1.60848 1.38405 1.23139 0.86670 0.94917 0.97923 1.23627 1.00583 0.98138 0.99224 1.22592 0.96820 0.98628 0.81021 0.86985 1.55104 1.41806 1.73088 1.15058 1.00789 0.72424 0.72997 0.72156 1.93554 1.86526 1.38233 1.78408 1.93555 1.86354 1.86637 1.30507 1.30718 1.23933 1.15639 1.08342 1.20997 0.92629 0.91141 0.98703 1.21286 0.98965 1.01485 0.95611 1.20785 0.94543 0.91555 0.93184 1.18272 0.91348 0.94543 0.94885 1.21254 0.93654 1.11601 1.30233 0.92150 1.25904 0.94919 1.00737 0.97590 1.70060 1.02823 1.40389 1.43550 0.85499 0.77922 0.78780 0.78882 1.19152 1.20911 1.19046 1.21271 0.97728 0.97241 1.00898 1.20997 0.94135 0.96287 0.92276 0.92964 0.91954 0.92063 0.91367 0.89784 0.90616 0.90190 0.88674 0.89795 0.72986 0.82718 0.85440 0.97212 0.97138 0.92479 0.85344 0.82791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.85 71.98 0.71 -1.26 16 2 C -0.13 -1.95 5.67 30.59 0.17 -1.77 16 3 C 0.08 1.28 3.08 31.26 0.10 1.38 16 4 H 0.09 1.16 8.05 -2.39 -0.02 1.14 16 5 O -0.39 -7.42 10.81 -148.98 -1.61 -9.03 16 6 C 0.05 0.86 7.79 72.45 0.56 1.42 16 7 C -0.18 -3.02 6.72 31.85 0.21 -2.81 16 8 C 0.12 1.94 3.18 46.45 0.15 2.09 16 9 H 0.11 1.92 7.52 -2.38 -0.02 1.90 16 10 N -1.09 -17.13 5.62 -163.36 -0.92 -18.04 16 11 S 2.73 62.53 5.71 -56.49 -0.32 62.21 16 12 O -0.98 -26.54 16.69 -128.00 -2.14 -28.68 16 13 O -0.98 -26.74 17.28 -128.00 -2.21 -28.96 16 14 C -0.70 -19.00 5.95 22.27 0.13 -18.86 16 15 C -0.02 -0.45 9.52 22.27 0.21 -0.24 16 16 C -0.15 -5.49 9.70 22.27 0.22 -5.27 16 17 C 0.00 -0.01 5.07 -19.87 -0.10 -0.11 16 18 C 0.05 2.33 5.10 29.10 0.15 2.48 16 19 C -0.53 -28.30 9.09 25.60 0.23 -28.06 16 20 H 0.06 3.12 7.74 -2.91 -0.02 3.09 16 21 C 0.01 0.39 5.46 84.65 0.46 0.86 16 22 N -0.93 -53.84 13.29 21.45 0.28 -53.56 16 23 Si 0.96 41.98 29.54 68.60 2.03 44.01 16 24 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 25 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 26 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 27 C -0.15 -5.35 9.70 22.27 0.22 -5.14 16 28 C -0.02 -0.51 9.52 22.27 0.21 -0.30 16 29 H 0.05 0.80 7.99 -2.39 -0.02 0.78 16 30 H 0.06 0.73 8.14 -2.39 -0.02 0.72 16 31 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.08 1.26 8.14 -2.39 -0.02 1.25 16 35 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.43 4.55 8.82 -96.75 -0.85 3.69 16 39 H 0.16 3.68 7.62 -2.91 -0.02 3.66 16 40 H 0.13 4.42 8.06 -2.91 -0.02 4.40 16 41 H 0.01 0.52 8.08 -2.39 -0.02 0.50 16 42 H 0.01 0.55 8.09 -2.39 -0.02 0.54 16 43 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 44 H 0.13 4.39 8.06 -2.91 -0.02 4.37 16 45 H 0.15 3.59 7.62 -2.91 -0.02 3.57 16 Total: -1.00 -68.18 386.77 -1.12 -69.30 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: 0.13 Total: 18.35 kcal Atomic # 6 Polarization: -59.24 SS G_CDS: 3.64 Total: -55.61 kcal Atomic # 7 Polarization: -70.97 SS G_CDS: -0.63 Total: -71.60 kcal Atomic # 8 Polarization: -60.71 SS G_CDS: -5.96 Total: -66.67 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Atomic # 16 Polarization: 62.53 SS G_CDS: -0.32 Total: 62.21 kcal Total: -68.18 -1.12 -69.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885237093.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.098 kcal (2) G-P(sol) polarization free energy of solvation -68.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.13 seconds