Wall clock time and date at job start Sat Apr 11 2020 05:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47628 * 2 1 4 4 C 1.53007 * 109.46980 * 240.00235 * 2 1 3 5 5 S 1.81401 * 109.47338 * 120.00252 * 2 1 3 6 6 O 1.42099 * 108.57836 * 305.51547 * 5 2 1 7 7 O 1.42095 * 108.58021 * 174.48534 * 5 2 1 8 8 C 1.81401 * 101.91802 * 59.99650 * 5 2 1 9 9 C 1.50703 * 109.47182 * 180.02562 * 8 5 2 10 10 O 1.21288 * 119.99881 * 359.97438 * 9 8 5 11 11 N 1.34775 * 120.00328 * 180.02562 * 9 8 5 12 12 C 1.39928 * 119.99875 * 185.27858 * 11 9 8 13 13 C 1.38868 * 120.07340 * 33.28160 * 12 11 9 14 14 C 1.38110 * 119.92663 * 180.02562 * 13 12 11 15 15 C 1.38275 * 120.07433 * 0.02562 * 14 13 12 16 16 C 1.50698 * 119.93061 * 179.97438 * 15 14 13 17 17 C 1.50700 * 109.47341 * 90.00296 * 16 15 14 18 18 H 1.07998 * 119.99543 * 359.97438 * 17 16 15 19 19 C 1.37874 * 119.99972 * 180.27455 * 17 16 15 20 20 N 1.31506 * 120.00458 * 359.72590 * 19 17 16 21 21 Si 1.86802 * 119.99822 * 179.72495 * 19 17 16 22 22 H 1.48500 * 109.47186 * 59.99717 * 21 19 17 23 23 H 1.48501 * 109.47351 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47032 * 300.00016 * 21 19 17 25 25 C 1.38281 * 120.13820 * 0.25559 * 15 14 13 26 26 C 1.38112 * 120.07288 * 359.48316 * 25 15 14 27 27 H 1.09005 * 109.47117 * 300.00141 * 1 2 3 28 28 H 1.09009 * 109.46828 * 59.99373 * 1 2 3 29 29 H 1.09000 * 109.47462 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47582 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.46906 * 300.00355 * 3 2 1 32 32 H 1.08997 * 109.46408 * 60.00045 * 3 2 1 33 33 H 1.08995 * 109.47007 * 299.99532 * 4 2 1 34 34 H 1.08996 * 109.46964 * 60.00350 * 4 2 1 35 35 H 1.09004 * 109.46907 * 180.02562 * 4 2 1 36 36 H 1.09001 * 109.47432 * 60.00464 * 8 5 2 37 37 H 1.09002 * 109.47447 * 300.00268 * 8 5 2 38 38 H 0.96998 * 119.99832 * 5.26614 * 11 9 8 39 39 H 1.07997 * 120.03561 * 0.02562 * 13 12 11 40 40 H 1.08007 * 119.96285 * 179.97438 * 14 13 12 41 41 H 1.08996 * 109.47182 * 329.99897 * 16 15 14 42 42 H 1.09009 * 109.47227 * 210.00353 * 16 15 14 43 43 H 0.96998 * 120.00685 * 179.97438 * 20 19 17 44 44 H 1.08005 * 119.96299 * 179.74134 * 25 15 14 45 45 H 1.08003 * 120.03456 * 180.25327 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 16 2.1347 -0.8552 1.4811 6 8 1.5479 -0.2496 2.6248 7 8 3.5496 -0.9572 1.3990 8 6 1.4228 -2.5108 1.2746 9 6 1.8269 -3.3800 2.4375 10 8 2.5267 -2.9273 3.3186 11 7 1.4116 -4.6608 2.4979 12 6 1.6933 -5.4350 3.6289 13 6 1.7416 -4.8420 4.8837 14 6 2.0205 -5.6090 5.9979 15 6 2.2519 -6.9657 5.8651 16 6 2.5564 -7.7994 7.0830 17 6 1.2707 -8.3309 7.6622 18 1 0.3274 -8.0889 7.1953 19 6 1.2983 -9.1211 8.7917 20 7 2.4469 -9.4154 9.3605 21 14 -0.2960 -9.7737 9.5142 22 1 -0.9892 -10.6141 8.5051 23 1 0.0036 -10.5902 10.7178 24 1 -1.1699 -8.6347 9.8943 25 6 2.2102 -7.5581 4.6163 26 6 1.9266 -6.7978 3.4987 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5140 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1301 1.4425 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9562 0.8900 33 1 1.6766 -1.7489 -1.2493 34 1 1.6766 -0.2073 -2.1392 35 1 3.1300 -0.7216 -1.2491 36 1 1.7892 -2.9509 0.3471 37 1 0.3359 -2.4370 1.2371 38 1 0.9172 -5.0458 1.7574 39 1 1.5614 -3.7823 4.9881 40 1 2.0586 -5.1483 6.9741 41 1 3.0632 -7.1845 7.8267 42 1 3.1999 -8.6329 6.8011 43 1 2.4663 -9.9710 10.1554 44 1 2.3955 -8.6173 4.5152 45 1 1.8901 -7.2619 2.5241 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928401854.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:47 Heat of formation + Delta-G solvation = -89.094370 kcal Electronic energy + Delta-G solvation = -26769.834527 eV Core-core repulsion = 22879.521439 eV Total energy + Delta-G solvation = -3890.313088 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.54698 -38.30365 -37.31348 -37.18855 -36.26660 -35.10006 -33.10892 -31.58168 -30.37396 -30.02091 -28.08994 -27.94002 -26.49518 -23.45151 -22.48887 -22.29878 -21.12614 -20.13457 -18.81195 -18.08264 -17.60788 -16.64954 -16.58210 -16.34297 -16.22978 -15.60115 -15.00021 -14.86254 -14.74695 -14.39840 -14.20232 -14.13232 -13.82167 -13.36047 -13.11247 -12.99549 -12.93971 -12.84342 -12.58708 -12.46065 -12.31069 -12.19613 -12.05530 -11.92098 -11.81876 -11.50072 -11.37920 -11.28665 -10.87500 -10.66064 -10.57204 -10.44160 -10.33797 -9.98670 -9.48701 -9.32538 -8.41798 -8.33807 -7.47097 -6.02988 -4.07304 -0.52382 1.66444 2.01231 2.30229 2.42161 2.68291 3.32345 3.36650 3.39541 3.42094 3.49953 3.85718 3.88352 4.10878 4.24908 4.36436 4.44298 4.53590 4.57799 4.77305 4.88839 4.98277 4.99259 5.05674 5.11073 5.30471 5.36556 5.37629 5.47955 5.48113 5.50996 5.81915 5.96673 6.04646 6.15555 6.59938 6.64102 6.78727 7.12535 7.16933 7.26378 7.50045 7.63871 7.85139 7.86789 7.92350 8.32350 8.97584 9.56289 11.06622 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.029656 B = 0.002062 C = 0.002053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.930580 B =13575.843483 C =13635.230935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.547 4.547 3 C -0.138 4.138 4 C -0.143 4.143 5 S 2.453 3.547 6 O -0.914 6.914 7 O -0.915 6.915 8 C -0.664 4.664 9 C 0.537 3.463 10 O -0.510 6.510 11 N -0.653 5.653 12 C 0.095 3.905 13 C -0.116 4.116 14 C -0.107 4.107 15 C -0.038 4.038 16 C 0.047 3.953 17 C -0.512 4.512 18 H 0.057 0.943 19 C 0.058 3.942 20 N -0.894 5.894 21 Si 0.896 3.104 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.276 1.276 25 C -0.109 4.109 26 C -0.138 4.138 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.161 0.839 37 H 0.163 0.837 38 H 0.409 0.591 39 H 0.126 0.874 40 H 0.124 0.876 41 H 0.030 0.970 42 H 0.029 0.971 43 H 0.263 0.737 44 H 0.124 0.876 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.878 17.941 -26.341 32.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.637 4.637 3 C -0.196 4.196 4 C -0.201 4.201 5 S 2.629 3.371 6 O -0.911 6.911 7 O -0.912 6.912 8 C -0.791 4.791 9 C 0.321 3.679 10 O -0.385 6.385 11 N -0.298 5.298 12 C 0.004 3.996 13 C -0.136 4.136 14 C -0.125 4.125 15 C -0.038 4.038 16 C 0.010 3.990 17 C -0.550 4.550 18 H 0.075 0.925 19 C -0.144 4.144 20 N -0.532 5.532 21 Si 0.724 3.276 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.202 1.202 25 C -0.127 4.127 26 C -0.158 4.158 27 H 0.099 0.901 28 H 0.101 0.899 29 H 0.087 0.913 30 H 0.094 0.906 31 H 0.102 0.898 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.179 0.821 37 H 0.180 0.820 38 H 0.244 0.756 39 H 0.144 0.856 40 H 0.142 0.858 41 H 0.048 0.952 42 H 0.048 0.952 43 H 0.072 0.928 44 H 0.142 0.858 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -3.793 18.495 -24.900 31.248 hybrid contribution -1.774 -0.998 -0.793 2.185 sum -5.568 17.497 -25.693 31.580 Atomic orbital electron populations 1.21856 0.89431 1.03595 1.05270 1.29894 1.06680 1.09251 1.17831 1.21721 1.02271 0.90858 1.04773 1.21854 1.02764 0.99815 0.95696 1.07741 0.76135 0.76457 0.76750 1.93582 1.79266 1.73504 1.44764 1.93579 1.26224 1.85057 1.86326 1.30971 1.16160 1.24482 1.07489 1.19137 0.80164 0.82769 0.85794 1.90906 1.35791 1.72655 1.39144 1.43149 1.55802 1.11096 1.19723 1.17507 1.05775 0.90604 0.85751 1.21042 1.01333 1.00325 0.90852 1.21024 0.99822 0.93758 0.97927 1.20764 0.92768 0.93836 0.96449 1.18367 0.97387 0.94021 0.89194 1.21010 0.92395 1.30799 1.10840 0.92515 1.25016 0.96334 0.96249 0.96771 1.69941 1.24646 1.37645 1.20996 0.86589 0.83586 0.78960 0.78478 1.20210 1.21246 1.20169 1.20904 1.00559 0.99651 0.91610 1.20725 1.03988 0.92143 0.98993 0.90112 0.89946 0.91266 0.90628 0.89799 0.90612 0.91284 0.89940 0.90145 0.82068 0.81966 0.75568 0.85610 0.85794 0.95164 0.95226 0.92763 0.85809 0.86652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.51 8.22 37.15 0.31 -0.20 16 2 C -0.55 -2.92 0.87 -90.62 -0.08 -2.99 16 3 C -0.14 -0.73 8.48 37.16 0.32 -0.42 16 4 C -0.14 -0.49 8.22 37.16 0.31 -0.18 16 5 S 2.45 25.10 3.01 -107.50 -0.32 24.78 16 6 O -0.91 -12.78 17.76 -59.54 -1.06 -13.84 16 7 O -0.91 -12.77 17.76 -59.52 -1.06 -13.83 16 8 C -0.66 -4.82 5.39 36.01 0.19 -4.63 16 9 C 0.54 7.07 7.59 -10.98 -0.08 6.98 16 10 O -0.51 -9.26 13.31 2.55 0.03 -9.22 16 11 N -0.65 -7.92 5.34 -9.86 -0.05 -7.97 16 12 C 0.10 1.57 6.28 -83.69 -0.53 1.04 16 13 C -0.12 -2.19 8.66 -39.40 -0.34 -2.53 16 14 C -0.11 -2.22 9.69 -39.61 -0.38 -2.60 16 15 C -0.04 -0.83 5.07 -104.59 -0.53 -1.36 16 16 C 0.05 1.22 5.10 -29.04 -0.15 1.07 16 17 C -0.51 -14.34 9.09 -34.44 -0.31 -14.65 16 18 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 20 N -0.89 -26.49 13.29 55.43 0.74 -25.75 16 21 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 C -0.11 -2.08 9.69 -39.61 -0.38 -2.46 16 26 C -0.14 -2.22 9.96 -39.39 -0.39 -2.61 16 27 H 0.08 0.34 8.06 -51.93 -0.42 -0.08 16 28 H 0.08 0.18 8.14 -51.92 -0.42 -0.24 16 29 H 0.07 0.10 6.56 -51.93 -0.34 -0.24 16 30 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.09 6.55 -51.93 -0.34 -0.25 16 34 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 35 H 0.08 0.33 8.06 -51.93 -0.42 -0.09 16 36 H 0.16 0.49 6.87 -51.92 -0.36 0.14 16 37 H 0.16 0.54 6.87 -51.92 -0.36 0.18 16 38 H 0.41 3.06 8.82 -40.82 -0.36 2.70 16 39 H 0.13 2.37 6.42 -52.49 -0.34 2.04 16 40 H 0.12 2.52 8.06 -52.48 -0.42 2.10 16 41 H 0.03 0.83 8.08 -51.93 -0.42 0.41 16 42 H 0.03 0.80 8.08 -51.92 -0.42 0.38 16 43 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 44 H 0.12 2.25 8.06 -52.48 -0.42 1.83 16 45 H 0.12 1.43 8.06 -52.48 -0.42 1.01 16 LS Contribution 384.40 15.07 5.79 5.79 Total: -1.00 -38.75 384.40 -9.80 -48.55 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -6.69 Total: -1.04 kcal Atomic # 6 Polarization: -21.84 SS G_CDS: -2.16 Total: -24.00 kcal Atomic # 7 Polarization: -34.41 SS G_CDS: 0.68 Total: -33.72 kcal Atomic # 8 Polarization: -34.81 SS G_CDS: -2.08 Total: -36.89 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: 25.10 SS G_CDS: -0.32 Total: 24.78 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -38.75 -9.80 -48.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928401854.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.544 kcal (2) G-P(sol) polarization free energy of solvation -38.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds