Wall clock time and date at job start Sat Apr 11 2020 05:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47628 * 2 1 4 4 C 1.53007 * 109.46980 * 240.00235 * 2 1 3 5 5 S 1.81401 * 109.47338 * 120.00252 * 2 1 3 6 6 O 1.42099 * 108.57836 * 305.51547 * 5 2 1 7 7 O 1.42095 * 108.58021 * 174.48534 * 5 2 1 8 8 C 1.81401 * 101.91802 * 59.99650 * 5 2 1 9 9 C 1.50703 * 109.47182 * 180.02562 * 8 5 2 10 10 O 1.21288 * 119.99881 * 359.97438 * 9 8 5 11 11 N 1.34775 * 120.00328 * 180.02562 * 9 8 5 12 12 C 1.39928 * 119.99875 * 185.27858 * 11 9 8 13 13 C 1.38868 * 120.07340 * 33.28160 * 12 11 9 14 14 C 1.38110 * 119.92663 * 180.02562 * 13 12 11 15 15 C 1.38275 * 120.07433 * 0.02562 * 14 13 12 16 16 C 1.50698 * 119.93061 * 179.97438 * 15 14 13 17 17 C 1.50700 * 109.47341 * 90.00296 * 16 15 14 18 18 H 1.07998 * 119.99543 * 359.97438 * 17 16 15 19 19 C 1.37874 * 119.99972 * 180.27455 * 17 16 15 20 20 N 1.31506 * 120.00458 * 359.72590 * 19 17 16 21 21 Si 1.86802 * 119.99822 * 179.72495 * 19 17 16 22 22 H 1.48500 * 109.47186 * 59.99717 * 21 19 17 23 23 H 1.48501 * 109.47351 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47032 * 300.00016 * 21 19 17 25 25 C 1.38281 * 120.13820 * 0.25559 * 15 14 13 26 26 C 1.38112 * 120.07288 * 359.48316 * 25 15 14 27 27 H 1.09005 * 109.47117 * 300.00141 * 1 2 3 28 28 H 1.09009 * 109.46828 * 59.99373 * 1 2 3 29 29 H 1.09000 * 109.47462 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47582 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.46906 * 300.00355 * 3 2 1 32 32 H 1.08997 * 109.46408 * 60.00045 * 3 2 1 33 33 H 1.08995 * 109.47007 * 299.99532 * 4 2 1 34 34 H 1.08996 * 109.46964 * 60.00350 * 4 2 1 35 35 H 1.09004 * 109.46907 * 180.02562 * 4 2 1 36 36 H 1.09001 * 109.47432 * 60.00464 * 8 5 2 37 37 H 1.09002 * 109.47447 * 300.00268 * 8 5 2 38 38 H 0.96998 * 119.99832 * 5.26614 * 11 9 8 39 39 H 1.07997 * 120.03561 * 0.02562 * 13 12 11 40 40 H 1.08007 * 119.96285 * 179.97438 * 14 13 12 41 41 H 1.08996 * 109.47182 * 329.99897 * 16 15 14 42 42 H 1.09009 * 109.47227 * 210.00353 * 16 15 14 43 43 H 0.96998 * 120.00685 * 179.97438 * 20 19 17 44 44 H 1.08005 * 119.96299 * 179.74134 * 25 15 14 45 45 H 1.08003 * 120.03456 * 180.25327 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 16 2.1347 -0.8552 1.4811 6 8 1.5479 -0.2496 2.6248 7 8 3.5496 -0.9572 1.3990 8 6 1.4228 -2.5108 1.2746 9 6 1.8269 -3.3800 2.4375 10 8 2.5267 -2.9273 3.3186 11 7 1.4116 -4.6608 2.4979 12 6 1.6933 -5.4350 3.6289 13 6 1.7416 -4.8420 4.8837 14 6 2.0205 -5.6090 5.9979 15 6 2.2519 -6.9657 5.8651 16 6 2.5564 -7.7994 7.0830 17 6 1.2707 -8.3309 7.6622 18 1 0.3274 -8.0889 7.1953 19 6 1.2983 -9.1211 8.7917 20 7 2.4469 -9.4154 9.3605 21 14 -0.2960 -9.7737 9.5142 22 1 -0.9892 -10.6141 8.5051 23 1 0.0036 -10.5902 10.7178 24 1 -1.1699 -8.6347 9.8943 25 6 2.2102 -7.5581 4.6163 26 6 1.9266 -6.7978 3.4987 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5140 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1301 1.4425 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9562 0.8900 33 1 1.6766 -1.7489 -1.2493 34 1 1.6766 -0.2073 -2.1392 35 1 3.1300 -0.7216 -1.2491 36 1 1.7892 -2.9509 0.3471 37 1 0.3359 -2.4370 1.2371 38 1 0.9172 -5.0458 1.7574 39 1 1.5614 -3.7823 4.9881 40 1 2.0586 -5.1483 6.9741 41 1 3.0632 -7.1845 7.8267 42 1 3.1999 -8.6329 6.8011 43 1 2.4663 -9.9710 10.1554 44 1 2.3955 -8.6173 4.5152 45 1 1.8901 -7.2619 2.5241 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928401854.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:46 Heat of formation + Delta-G solvation = -118.299169 kcal Electronic energy + Delta-G solvation = -26771.100942 eV Core-core repulsion = 22879.521439 eV Total energy + Delta-G solvation = -3891.579503 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.71961 -39.72937 -38.15057 -37.56639 -37.09956 -36.46149 -35.05543 -32.83763 -31.84857 -31.34999 -28.58827 -28.29093 -28.01113 -25.23872 -23.96481 -22.99133 -22.37581 -21.50296 -19.56201 -19.10001 -18.53123 -18.49051 -17.46714 -17.39597 -17.13787 -16.78767 -16.48816 -15.98441 -15.68846 -15.41630 -15.11628 -15.05817 -14.59971 -14.53963 -14.34540 -14.32407 -13.98150 -13.67962 -13.31690 -13.27464 -13.26017 -13.22085 -13.16737 -13.05016 -12.63160 -12.62125 -12.48736 -12.32951 -12.15551 -12.11500 -12.02215 -11.78745 -11.60743 -11.36795 -11.07362 -11.00001 -10.60309 -9.82641 -8.97309 -8.18867 -6.33552 -1.20608 0.30922 0.51407 1.30344 1.40022 1.43135 1.51300 1.64190 1.75323 2.39884 2.73123 2.91458 2.95163 3.10711 3.31799 3.45316 3.50049 3.90715 3.92708 4.00114 4.08799 4.12335 4.34206 4.53521 4.58458 4.58870 4.59956 4.64429 4.70316 4.76721 4.82359 4.83181 5.07213 5.09975 5.23779 5.25884 5.29488 5.30880 5.36307 5.38967 5.54428 5.74154 6.03129 6.06165 6.17459 6.23234 6.78785 6.90093 7.34826 8.89484 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.029656 B = 0.002062 C = 0.002053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.930580 B =13575.843483 C =13635.230935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.503 4.503 3 C -0.153 4.153 4 C -0.154 4.154 5 S 2.413 3.587 6 O -0.975 6.975 7 O -0.974 6.974 8 C -0.645 4.645 9 C 0.525 3.475 10 O -0.568 6.568 11 N -0.636 5.636 12 C 0.111 3.889 13 C -0.128 4.128 14 C -0.122 4.122 15 C -0.071 4.071 16 C 0.056 3.944 17 C -0.528 4.528 18 H 0.057 0.943 19 C 0.001 3.999 20 N -0.931 5.931 21 Si 0.968 3.032 22 H -0.263 1.263 23 H -0.281 1.281 24 H -0.270 1.270 25 C -0.113 4.113 26 C -0.119 4.119 27 H 0.067 0.933 28 H 0.107 0.893 29 H 0.100 0.900 30 H 0.065 0.935 31 H 0.114 0.886 32 H 0.064 0.936 33 H 0.101 0.899 34 H 0.107 0.893 35 H 0.068 0.932 36 H 0.215 0.785 37 H 0.212 0.788 38 H 0.437 0.563 39 H 0.120 0.880 40 H 0.108 0.892 41 H -0.003 1.003 42 H 0.009 0.991 43 H 0.265 0.735 44 H 0.131 0.869 45 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.075 17.517 -31.346 36.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.598 4.598 3 C -0.211 4.211 4 C -0.212 4.212 5 S 2.598 3.402 6 O -0.972 6.972 7 O -0.971 6.971 8 C -0.774 4.774 9 C 0.313 3.687 10 O -0.447 6.447 11 N -0.283 5.283 12 C 0.017 3.983 13 C -0.148 4.148 14 C -0.141 4.141 15 C -0.071 4.071 16 C 0.019 3.981 17 C -0.566 4.566 18 H 0.075 0.925 19 C -0.197 4.197 20 N -0.571 5.571 21 Si 0.792 3.208 22 H -0.188 1.188 23 H -0.207 1.207 24 H -0.196 1.196 25 C -0.131 4.131 26 C -0.139 4.139 27 H 0.086 0.914 28 H 0.126 0.874 29 H 0.119 0.881 30 H 0.084 0.916 31 H 0.133 0.867 32 H 0.083 0.917 33 H 0.119 0.881 34 H 0.126 0.874 35 H 0.087 0.913 36 H 0.232 0.768 37 H 0.229 0.771 38 H 0.278 0.722 39 H 0.138 0.862 40 H 0.126 0.874 41 H 0.015 0.985 42 H 0.027 0.973 43 H 0.074 0.926 44 H 0.149 0.851 45 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -6.985 18.071 -29.908 35.635 hybrid contribution -0.775 -0.745 0.588 1.226 sum -7.760 17.326 -29.320 34.929 Atomic orbital electron populations 1.22085 0.87254 1.05995 1.05902 1.29534 1.08009 1.07967 1.14262 1.21921 1.02003 0.91410 1.05761 1.22087 1.02403 1.01779 0.94926 1.08448 0.75473 0.77938 0.78297 1.93509 1.79541 1.75030 1.49124 1.93506 1.29872 1.86144 1.87600 1.30843 1.19068 1.20612 1.06843 1.20113 0.78943 0.83091 0.86561 1.90911 1.38289 1.73722 1.41808 1.43026 1.55608 1.10603 1.19075 1.17594 1.03191 0.91297 0.86213 1.21040 1.02091 0.99913 0.91768 1.20914 1.01210 0.93702 0.98292 1.20447 0.96448 0.93913 0.96335 1.18104 0.96246 0.93321 0.90407 1.21340 0.93038 1.30900 1.11302 0.92493 1.25978 1.00093 0.96446 0.97141 1.70078 1.27081 1.38403 1.21525 0.85456 0.78993 0.78464 0.77871 1.18754 1.20659 1.19552 1.21038 1.00360 1.00399 0.91339 1.21080 1.01266 0.91481 1.00027 0.91384 0.87425 0.88133 0.91560 0.86711 0.91656 0.88062 0.87441 0.91262 0.76798 0.77070 0.72214 0.86225 0.87362 0.98462 0.97268 0.92572 0.85072 0.81428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.37 8.22 71.98 0.59 0.22 16 2 C -0.50 -3.80 0.87 -10.79 -0.01 -3.81 16 3 C -0.15 -1.40 8.48 71.98 0.61 -0.79 16 4 C -0.15 -0.30 8.22 71.98 0.59 0.29 16 5 S 2.41 47.97 3.01 -56.49 -0.17 47.80 16 6 O -0.97 -28.85 17.76 -125.74 -2.23 -31.08 16 7 O -0.97 -28.50 17.76 -125.76 -2.23 -30.73 16 8 C -0.65 -6.65 5.39 71.24 0.38 -6.26 16 9 C 0.53 12.64 7.59 87.66 0.67 13.30 16 10 O -0.57 -21.08 13.31 -0.19 0.00 -21.08 16 11 N -0.64 -12.94 5.34 -303.50 -1.62 -14.56 16 12 C 0.11 3.40 6.28 38.15 0.24 3.64 16 13 C -0.13 -4.96 8.66 22.39 0.19 -4.77 16 14 C -0.12 -5.40 9.69 22.25 0.22 -5.19 16 15 C -0.07 -3.27 5.07 -19.85 -0.10 -3.37 16 16 C 0.06 3.11 5.10 29.10 0.15 3.26 16 17 C -0.53 -30.66 9.09 25.60 0.23 -30.42 16 18 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 19 C 0.00 0.08 5.46 84.66 0.46 0.55 16 20 N -0.93 -57.16 13.29 21.44 0.28 -56.88 16 21 Si 0.97 44.73 29.54 68.60 2.03 46.75 16 22 H -0.26 -11.50 7.11 99.48 0.71 -10.80 16 23 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 24 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 25 C -0.11 -4.25 9.69 22.25 0.22 -4.03 16 26 C -0.12 -3.43 9.96 22.39 0.22 -3.21 16 27 H 0.07 0.40 8.06 -2.38 -0.02 0.38 16 28 H 0.11 -0.16 8.14 -2.38 -0.02 -0.18 16 29 H 0.10 -0.38 6.56 -2.39 -0.02 -0.40 16 30 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.11 0.37 8.14 -2.39 -0.02 0.36 16 32 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.10 -0.45 6.55 -2.39 -0.02 -0.46 16 34 H 0.11 -0.20 8.14 -2.39 -0.02 -0.22 16 35 H 0.07 0.35 8.06 -2.38 -0.02 0.33 16 36 H 0.22 -0.14 6.87 -2.39 -0.02 -0.16 16 37 H 0.21 0.05 6.87 -2.39 -0.02 0.03 16 38 H 0.44 3.86 8.82 -92.71 -0.82 3.04 16 39 H 0.12 4.75 6.42 -2.91 -0.02 4.73 16 40 H 0.11 4.90 8.06 -2.91 -0.02 4.88 16 41 H 0.00 -0.18 8.08 -2.39 -0.02 -0.20 16 42 H 0.01 0.52 8.08 -2.38 -0.02 0.50 16 43 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 44 H 0.13 4.67 8.06 -2.91 -0.02 4.64 16 45 H 0.17 3.12 8.06 -2.91 -0.02 3.09 16 Total: -1.00 -95.92 384.40 0.90 -95.02 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: 0.18 Total: 5.35 kcal Atomic # 6 Polarization: -45.25 SS G_CDS: 4.66 Total: -40.59 kcal Atomic # 7 Polarization: -70.10 SS G_CDS: -1.34 Total: -71.44 kcal Atomic # 8 Polarization: -78.42 SS G_CDS: -4.47 Total: -82.89 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.75 kcal Atomic # 16 Polarization: 47.97 SS G_CDS: -0.17 Total: 47.80 kcal Total: -95.92 0.90 -95.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928401854.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.279 kcal (2) G-P(sol) polarization free energy of solvation -95.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds