Wall clock time and date at job start Sat Apr 11 2020 05:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 108.05297 * 2 1 4 4 C 1.45734 * 108.31151 * 117.12076 * 2 1 3 5 5 S 1.83492 * 109.63104 * 186.02772 * 4 2 1 6 6 O 1.42102 * 108.58881 * 45.98650 * 5 4 2 7 7 O 1.42094 * 108.59796 * 177.07064 * 5 4 2 8 8 C 1.80074 * 101.81004 * 291.50098 * 5 4 2 9 9 C 1.53846 * 112.92849 * 85.71116 * 8 5 4 10 10 C 1.52910 * 115.30347 * 316.11726 * 9 8 5 11 11 N 1.45588 * 109.23046 * 318.38587 * 10 9 8 12 12 C 1.46903 * 110.99878 * 226.09509 * 11 10 9 13 13 C 1.50702 * 109.46997 * 69.83004 * 12 11 10 14 14 C 1.38306 * 119.93149 * 269.72577 * 13 12 11 15 15 C 1.38099 * 120.06660 * 179.72346 * 14 13 12 16 16 C 1.38876 * 119.92810 * 0.55465 * 15 14 13 17 17 O 1.35759 * 120.06712 * 179.74590 * 16 15 14 18 18 C 1.34824 * 117.00269 * 174.43775 * 17 16 15 19 19 H 1.08000 * 119.99722 * 5.06204 * 18 17 16 20 20 C 1.38655 * 120.00442 * 185.05671 * 18 17 16 21 21 N 1.31550 * 119.99463 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00090 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47528 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47086 * 120.00201 * 22 20 18 25 25 H 1.48506 * 109.47195 * 239.99955 * 22 20 18 26 26 C 1.38883 * 119.86665 * 359.71977 * 16 15 14 27 27 C 1.38096 * 119.92719 * 0.02562 * 26 16 15 28 28 H 1.08994 * 109.47723 * 302.87524 * 1 2 3 29 29 H 1.08995 * 109.47204 * 62.88083 * 1 2 3 30 30 H 1.09009 * 109.46895 * 182.87278 * 1 2 3 31 31 H 1.09001 * 109.44115 * 306.06710 * 4 2 1 32 32 H 1.09006 * 109.44116 * 65.98625 * 4 2 1 33 33 H 1.09002 * 108.80928 * 324.82320 * 8 5 4 34 34 H 1.09004 * 108.71161 * 206.53844 * 8 5 4 35 35 H 1.08997 * 108.31948 * 194.60384 * 9 8 5 36 36 H 1.09005 * 108.31399 * 77.63022 * 9 8 5 37 37 H 1.08995 * 109.50861 * 198.45927 * 10 9 8 38 38 H 1.08999 * 109.50967 * 78.31497 * 10 9 8 39 39 H 1.09002 * 109.47139 * 189.83323 * 12 11 10 40 40 H 1.08999 * 109.47227 * 309.83333 * 12 11 10 41 41 H 1.08000 * 119.96237 * 0.02562 * 14 13 12 42 42 H 1.08003 * 120.03372 * 180.27110 * 15 14 13 43 43 H 0.97008 * 120.00061 * 180.02562 * 21 20 18 44 44 H 1.07997 * 120.03245 * 180.02562 * 26 16 15 45 45 H 1.07998 * 119.96234 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8678 1.0364 0.0000 4 6 1.9879 -0.6307 1.2314 5 16 3.8133 -0.4898 1.3544 6 8 4.1872 0.8434 1.0352 7 8 4.2286 -1.0500 2.5925 8 6 4.3571 -1.5739 0.0234 9 6 4.4135 -0.8657 -1.3412 10 6 3.2165 0.0299 -1.6627 11 7 1.9923 -0.6369 -1.2429 12 6 0.9641 -0.5574 -2.2891 13 6 1.3659 -1.4235 -3.4550 14 6 2.1187 -0.8889 -4.4848 15 6 2.4932 -1.6816 -5.5518 16 6 2.1034 -3.0138 -5.5957 17 8 2.4656 -3.7942 -6.6458 18 6 2.1539 -5.1038 -6.5715 19 1 1.5677 -5.4731 -5.7430 20 6 2.5857 -5.9764 -7.5587 21 7 3.3001 -5.5266 -8.5676 22 14 2.1531 -7.7907 -7.4559 23 1 1.3483 -8.0393 -6.2329 24 1 1.3673 -8.1808 -8.6540 25 1 3.4005 -8.5946 -7.3989 26 6 1.3427 -3.5462 -4.5629 27 6 0.9758 -2.7497 -3.4961 28 1 -0.3634 0.5578 0.8630 29 1 -0.3633 0.4684 -0.9146 30 1 -0.3633 -1.0265 0.0515 31 1 1.5274 -0.1349 2.0860 32 1 1.7048 -1.6834 1.2269 33 1 3.6694 -2.4166 -0.0467 34 1 5.3508 -1.9517 0.2641 35 1 4.4912 -1.6257 -2.1187 36 1 5.3162 -0.2557 -1.3735 37 1 3.1796 0.2168 -2.7359 38 1 3.3166 0.9760 -1.1309 39 1 0.0114 -0.9050 -1.8894 40 1 0.8634 0.4757 -2.6217 41 1 2.4180 0.1483 -4.4519 42 1 3.0848 -1.2647 -6.3535 43 1 3.6019 -6.1370 -9.2585 44 1 1.0384 -4.5819 -4.5941 45 1 0.3839 -3.1631 -2.6929 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933312757.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:59 Heat of formation + Delta-G solvation = -46.431485 kcal Electronic energy + Delta-G solvation = -27992.074275 eV Core-core repulsion = 24103.611189 eV Total energy + Delta-G solvation = -3888.463086 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.94 seconds Orbital eigenvalues (eV) -39.97954 -38.81283 -37.11785 -36.49008 -36.16537 -34.37801 -32.82976 -32.14637 -30.29688 -29.51085 -28.31842 -26.68167 -25.54889 -24.28213 -22.18965 -21.58957 -20.96376 -19.93311 -18.89699 -18.06462 -17.22344 -17.16851 -17.00531 -16.21543 -15.52370 -15.46454 -15.07185 -14.67536 -14.60206 -14.38226 -13.90752 -13.63574 -13.59165 -13.45964 -13.09987 -12.79679 -12.74581 -12.58700 -12.48824 -12.39144 -12.25716 -12.08011 -11.80021 -11.62268 -11.58196 -11.33395 -11.31761 -11.03081 -10.80581 -10.68345 -10.55986 -10.46773 -10.41437 -10.24172 -9.38115 -8.88725 -8.57809 -8.23283 -7.24513 -6.50180 -4.09015 -0.12523 2.14603 2.20337 2.52510 3.08172 3.10332 3.15745 3.45686 3.61911 3.86363 3.92314 4.41227 4.44204 4.58131 4.59321 4.65094 4.74750 4.99282 5.03650 5.08756 5.13858 5.21124 5.21982 5.29229 5.36742 5.41878 5.55272 5.63945 5.67607 5.70947 5.77178 5.81664 5.88002 5.93575 6.10879 6.15291 6.35577 6.63301 6.78101 6.85351 6.88920 7.02653 7.19407 7.34034 7.39201 7.76372 7.94869 8.95675 9.65335 10.67790 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017835 B = 0.002738 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.551249 B =10222.213438 C =10618.548449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.071 3.929 3 H 0.068 0.932 4 C -0.573 4.573 5 S 2.406 3.594 6 O -0.941 6.941 7 O -0.953 6.953 8 C -0.593 4.593 9 C -0.082 4.082 10 C 0.011 3.989 11 N -0.521 5.521 12 C 0.105 3.895 13 C -0.181 4.181 14 C -0.069 4.069 15 C -0.193 4.193 16 C 0.156 3.844 17 O -0.178 6.178 18 C -0.392 4.392 19 H 0.093 0.907 20 C 0.039 3.961 21 N -0.862 5.862 22 Si 0.941 3.059 23 H -0.267 1.267 24 H -0.276 1.276 25 H -0.276 1.276 26 C -0.235 4.235 27 C -0.049 4.049 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.135 0.865 32 H 0.138 0.862 33 H 0.138 0.862 34 H 0.128 0.872 35 H 0.084 0.916 36 H 0.070 0.930 37 H 0.092 0.908 38 H 0.072 0.928 39 H 0.088 0.912 40 H 0.040 0.960 41 H 0.108 0.892 42 H 0.115 0.885 43 H 0.270 0.730 44 H 0.126 0.874 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.881 9.977 16.997 20.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.038 4.038 3 H 0.086 0.914 4 C -0.703 4.703 5 S 2.590 3.410 6 O -0.938 6.938 7 O -0.950 6.950 8 C -0.724 4.724 9 C -0.121 4.121 10 C -0.117 4.117 11 N -0.246 5.246 12 C -0.021 4.021 13 C -0.182 4.182 14 C -0.088 4.088 15 C -0.212 4.212 16 C 0.102 3.898 17 O -0.081 6.081 18 C -0.468 4.468 19 H 0.110 0.890 20 C -0.165 4.165 21 N -0.496 5.496 22 Si 0.765 3.235 23 H -0.191 1.191 24 H -0.201 1.201 25 H -0.201 1.201 26 C -0.254 4.254 27 C -0.068 4.068 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.153 0.847 32 H 0.156 0.844 33 H 0.157 0.843 34 H 0.146 0.854 35 H 0.103 0.897 36 H 0.089 0.911 37 H 0.110 0.890 38 H 0.090 0.910 39 H 0.106 0.894 40 H 0.058 0.942 41 H 0.126 0.874 42 H 0.133 0.867 43 H 0.080 0.920 44 H 0.143 0.857 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -3.023 9.902 17.271 20.136 hybrid contribution -0.785 -0.848 -0.570 1.288 sum -3.808 9.054 16.701 19.375 Atomic orbital electron populations 1.22321 0.93763 1.03044 1.02602 1.20112 0.97452 0.96795 0.89409 0.91446 1.28959 1.25068 1.11356 1.04893 1.08359 0.79226 0.76753 0.76624 1.93546 1.80891 1.34296 1.85107 1.93578 1.80414 1.80251 1.40719 1.30050 1.12284 1.16179 1.13842 1.21075 0.98160 0.99355 0.93517 1.22732 0.89368 0.95996 1.03584 1.62589 1.05085 1.53681 1.03204 1.21156 0.94389 0.97268 0.89275 1.19045 1.07283 0.95048 0.96830 1.20497 0.97009 0.97887 0.93402 1.20170 1.07575 0.92476 1.00997 1.19396 0.91885 0.91194 0.87312 1.83977 1.69284 1.20112 1.34727 1.21372 1.34584 0.80289 1.10541 0.88998 1.25293 0.96062 1.00164 0.94994 1.70045 1.33390 1.35790 1.10414 0.85652 0.78511 0.80610 0.78685 1.19090 1.20124 1.20114 1.21159 1.06237 1.01227 0.96817 1.20528 0.97380 0.92648 0.96258 0.92209 0.91127 0.91275 0.84718 0.84358 0.84344 0.85402 0.89728 0.91084 0.88954 0.91019 0.89370 0.94174 0.87395 0.86663 0.92028 0.85674 0.87620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.13 7.69 37.16 0.29 -0.84 16 2 C 0.07 0.60 2.09 -71.03 -0.15 0.45 16 3 H 0.07 0.57 6.39 -51.93 -0.33 0.24 16 4 C -0.57 -4.12 5.38 33.72 0.18 -3.94 16 5 S 2.41 23.16 5.17 -107.50 -0.56 22.61 16 6 O -0.94 -11.53 15.50 -57.83 -0.90 -12.43 16 7 O -0.95 -12.32 18.10 -57.83 -1.05 -13.36 16 8 C -0.59 -5.38 5.70 37.60 0.21 -5.17 16 9 C -0.08 -0.86 5.60 -26.34 -0.15 -1.01 16 10 C 0.01 0.12 4.92 -4.58 -0.02 0.10 16 11 N -0.52 -5.30 4.06 -233.24 -0.95 -6.25 16 12 C 0.10 1.16 3.70 -4.97 -0.02 1.14 16 13 C -0.18 -2.68 5.10 -104.57 -0.53 -3.21 16 14 C -0.07 -1.10 8.43 -39.61 -0.33 -1.44 16 15 C -0.19 -3.81 9.99 -39.40 -0.39 -4.20 16 16 C 0.16 3.59 6.65 -39.11 -0.26 3.33 16 17 O -0.18 -4.93 9.76 0.04 0.00 -4.93 16 18 C -0.39 -10.66 9.49 30.89 0.29 -10.37 16 19 H 0.09 2.32 5.20 -52.49 -0.27 2.04 16 20 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 21 N -0.86 -24.82 13.67 55.48 0.76 -24.07 16 22 Si 0.94 20.10 29.55 -169.99 -5.02 15.07 16 23 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 24 H -0.28 -5.78 7.11 56.52 0.40 -5.37 16 25 H -0.28 -5.79 7.11 56.52 0.40 -5.38 16 26 C -0.24 -4.80 9.17 -39.39 -0.36 -5.16 16 27 C -0.05 -0.82 9.69 -39.61 -0.38 -1.20 16 28 H 0.06 0.35 8.11 -51.93 -0.42 -0.07 16 29 H 0.07 0.50 6.04 -51.93 -0.31 0.19 16 30 H 0.07 0.49 7.78 -51.92 -0.40 0.09 16 31 H 0.13 0.71 8.06 -51.93 -0.42 0.29 16 32 H 0.14 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.14 1.14 8.08 -51.73 -0.42 0.73 16 34 H 0.13 1.01 8.14 -51.71 -0.42 0.59 16 35 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.09 1.02 4.84 -51.93 -0.25 0.77 16 38 H 0.07 0.72 5.42 -51.93 -0.28 0.44 16 39 H 0.09 0.87 5.51 -51.93 -0.29 0.59 16 40 H 0.04 0.41 7.85 -51.93 -0.41 0.00 16 41 H 0.11 1.42 6.97 -52.49 -0.37 1.05 16 42 H 0.12 2.23 8.06 -52.48 -0.42 1.81 16 43 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 44 H 0.13 2.61 5.64 -52.49 -0.30 2.31 16 45 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 LS Contribution 359.12 15.07 5.41 5.41 Total: -1.00 -33.99 359.12 -10.16 -44.15 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -6.14 Total: 4.36 kcal Atomic # 6 Polarization: -28.83 SS G_CDS: -1.72 Total: -30.56 kcal Atomic # 7 Polarization: -30.13 SS G_CDS: -0.19 Total: -30.32 kcal Atomic # 8 Polarization: -28.78 SS G_CDS: -1.94 Total: -30.72 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.07 kcal Atomic # 16 Polarization: 23.16 SS G_CDS: -0.56 Total: 22.61 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.99 -10.16 -44.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933312757.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.284 kcal (2) G-P(sol) polarization free energy of solvation -33.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds