Wall clock time and date at job start Sat Apr 11 2020 05:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 108.05297 * 2 1 4 4 C 1.45734 * 108.31151 * 117.12076 * 2 1 3 5 5 S 1.83492 * 109.63104 * 186.02772 * 4 2 1 6 6 O 1.42102 * 108.58881 * 45.98650 * 5 4 2 7 7 O 1.42094 * 108.59796 * 177.07064 * 5 4 2 8 8 C 1.80074 * 101.81004 * 291.50098 * 5 4 2 9 9 C 1.53846 * 112.92849 * 85.71116 * 8 5 4 10 10 C 1.52910 * 115.30347 * 316.11726 * 9 8 5 11 11 N 1.45588 * 109.23046 * 318.38587 * 10 9 8 12 12 C 1.46903 * 110.99878 * 226.09509 * 11 10 9 13 13 C 1.50702 * 109.46997 * 69.83004 * 12 11 10 14 14 C 1.38306 * 119.93149 * 269.72577 * 13 12 11 15 15 C 1.38099 * 120.06660 * 179.72346 * 14 13 12 16 16 C 1.38876 * 119.92810 * 0.55465 * 15 14 13 17 17 O 1.35759 * 120.06712 * 179.74590 * 16 15 14 18 18 C 1.34824 * 117.00269 * 174.43775 * 17 16 15 19 19 H 1.08000 * 119.99722 * 5.06204 * 18 17 16 20 20 C 1.38655 * 120.00442 * 185.05671 * 18 17 16 21 21 N 1.31550 * 119.99463 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00090 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47528 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47086 * 120.00201 * 22 20 18 25 25 H 1.48506 * 109.47195 * 239.99955 * 22 20 18 26 26 C 1.38883 * 119.86665 * 359.71977 * 16 15 14 27 27 C 1.38096 * 119.92719 * 0.02562 * 26 16 15 28 28 H 1.08994 * 109.47723 * 302.87524 * 1 2 3 29 29 H 1.08995 * 109.47204 * 62.88083 * 1 2 3 30 30 H 1.09009 * 109.46895 * 182.87278 * 1 2 3 31 31 H 1.09001 * 109.44115 * 306.06710 * 4 2 1 32 32 H 1.09006 * 109.44116 * 65.98625 * 4 2 1 33 33 H 1.09002 * 108.80928 * 324.82320 * 8 5 4 34 34 H 1.09004 * 108.71161 * 206.53844 * 8 5 4 35 35 H 1.08997 * 108.31948 * 194.60384 * 9 8 5 36 36 H 1.09005 * 108.31399 * 77.63022 * 9 8 5 37 37 H 1.08995 * 109.50861 * 198.45927 * 10 9 8 38 38 H 1.08999 * 109.50967 * 78.31497 * 10 9 8 39 39 H 1.09002 * 109.47139 * 189.83323 * 12 11 10 40 40 H 1.08999 * 109.47227 * 309.83333 * 12 11 10 41 41 H 1.08000 * 119.96237 * 0.02562 * 14 13 12 42 42 H 1.08003 * 120.03372 * 180.27110 * 15 14 13 43 43 H 0.97008 * 120.00061 * 180.02562 * 21 20 18 44 44 H 1.07997 * 120.03245 * 180.02562 * 26 16 15 45 45 H 1.07998 * 119.96234 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8678 1.0364 0.0000 4 6 1.9879 -0.6307 1.2314 5 16 3.8133 -0.4898 1.3544 6 8 4.1872 0.8434 1.0352 7 8 4.2286 -1.0500 2.5925 8 6 4.3571 -1.5739 0.0234 9 6 4.4135 -0.8657 -1.3412 10 6 3.2165 0.0299 -1.6627 11 7 1.9923 -0.6369 -1.2429 12 6 0.9641 -0.5574 -2.2891 13 6 1.3659 -1.4235 -3.4550 14 6 2.1187 -0.8889 -4.4848 15 6 2.4932 -1.6816 -5.5518 16 6 2.1034 -3.0138 -5.5957 17 8 2.4656 -3.7942 -6.6458 18 6 2.1539 -5.1038 -6.5715 19 1 1.5677 -5.4731 -5.7430 20 6 2.5857 -5.9764 -7.5587 21 7 3.3001 -5.5266 -8.5676 22 14 2.1531 -7.7907 -7.4559 23 1 1.3483 -8.0393 -6.2329 24 1 1.3673 -8.1808 -8.6540 25 1 3.4005 -8.5946 -7.3989 26 6 1.3427 -3.5462 -4.5629 27 6 0.9758 -2.7497 -3.4961 28 1 -0.3634 0.5578 0.8630 29 1 -0.3633 0.4684 -0.9146 30 1 -0.3633 -1.0265 0.0515 31 1 1.5274 -0.1349 2.0860 32 1 1.7048 -1.6834 1.2269 33 1 3.6694 -2.4166 -0.0467 34 1 5.3508 -1.9517 0.2641 35 1 4.4912 -1.6257 -2.1187 36 1 5.3162 -0.2557 -1.3735 37 1 3.1796 0.2168 -2.7359 38 1 3.3166 0.9760 -1.1309 39 1 0.0114 -0.9050 -1.8894 40 1 0.8634 0.4757 -2.6217 41 1 2.4180 0.1483 -4.4519 42 1 3.0848 -1.2647 -6.3535 43 1 3.6019 -6.1370 -9.2585 44 1 1.0384 -4.5819 -4.5941 45 1 0.3839 -3.1631 -2.6929 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933312757.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:58 Heat of formation + Delta-G solvation = -71.364229 kcal Electronic energy + Delta-G solvation = -27993.155440 eV Core-core repulsion = 24103.611189 eV Total energy + Delta-G solvation = -3889.544251 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.05706 -40.20245 -38.20619 -37.79643 -37.01704 -35.11822 -34.39200 -33.46819 -31.77568 -30.69020 -29.05993 -27.69038 -27.15011 -25.42654 -23.63270 -22.42831 -22.24910 -20.84665 -19.83150 -19.67047 -18.79532 -17.97728 -17.87099 -17.07766 -16.53251 -16.37083 -16.25681 -16.17301 -15.83399 -15.53234 -15.42505 -15.06671 -14.67154 -14.43339 -14.25340 -14.04992 -13.79926 -13.50300 -13.40863 -13.24550 -13.16908 -13.11678 -12.94841 -12.88411 -12.64215 -12.48262 -12.32699 -12.24412 -12.11194 -11.97487 -11.78792 -11.63082 -11.21268 -11.11662 -10.98770 -10.77843 -9.70589 -9.38573 -8.86016 -8.46139 -6.13718 -0.85593 0.65591 0.73122 1.35403 1.43323 1.53334 1.82588 2.18090 2.66292 2.79187 2.95746 3.08706 3.30572 3.55604 3.72601 3.82823 3.90680 3.97399 4.06588 4.09453 4.16973 4.24989 4.27217 4.41566 4.52077 4.59459 4.64993 4.71426 4.79563 4.80412 4.85354 4.95076 5.00527 5.11097 5.15150 5.16469 5.19564 5.25191 5.34633 5.37391 5.61744 5.76624 5.84693 6.04808 6.06488 6.09631 6.29955 6.99348 7.81995 8.77515 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017835 B = 0.002738 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.551249 B =10222.213438 C =10618.548449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.067 3.933 3 H 0.070 0.930 4 C -0.555 4.555 5 S 2.410 3.590 6 O -0.972 6.972 7 O -0.990 6.990 8 C -0.593 4.593 9 C -0.085 4.085 10 C 0.009 3.991 11 N -0.525 5.525 12 C 0.105 3.895 13 C -0.148 4.148 14 C -0.061 4.061 15 C -0.206 4.206 16 C 0.113 3.887 17 O -0.237 6.237 18 C -0.410 4.410 19 H 0.102 0.898 20 C -0.024 4.024 21 N -0.922 5.922 22 Si 1.017 2.983 23 H -0.250 1.250 24 H -0.269 1.269 25 H -0.270 1.270 26 C -0.244 4.244 27 C -0.047 4.047 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.162 0.838 32 H 0.159 0.841 33 H 0.149 0.851 34 H 0.134 0.866 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.113 0.887 40 H 0.059 0.941 41 H 0.143 0.857 42 H 0.106 0.894 43 H 0.271 0.729 44 H 0.114 0.886 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.338 10.858 20.304 23.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.042 4.042 3 H 0.088 0.912 4 C -0.687 4.687 5 S 2.599 3.401 6 O -0.969 6.969 7 O -0.988 6.988 8 C -0.724 4.724 9 C -0.125 4.125 10 C -0.120 4.120 11 N -0.250 5.250 12 C -0.021 4.021 13 C -0.149 4.149 14 C -0.079 4.079 15 C -0.225 4.225 16 C 0.063 3.937 17 O -0.143 6.143 18 C -0.486 4.486 19 H 0.119 0.881 20 C -0.222 4.222 21 N -0.561 5.561 22 Si 0.837 3.163 23 H -0.173 1.173 24 H -0.194 1.194 25 H -0.195 1.195 26 C -0.263 4.263 27 C -0.065 4.065 28 H 0.095 0.905 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.180 0.820 32 H 0.177 0.823 33 H 0.168 0.832 34 H 0.152 0.848 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.105 0.895 38 H 0.097 0.903 39 H 0.131 0.869 40 H 0.077 0.923 41 H 0.161 0.839 42 H 0.125 0.875 43 H 0.080 0.920 44 H 0.132 0.868 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -5.466 10.834 20.641 23.944 hybrid contribution -0.107 -0.791 -1.329 1.550 sum -5.573 10.043 19.312 22.469 Atomic orbital electron populations 1.22347 0.92049 1.03799 1.03676 1.20215 0.98752 0.96802 0.88460 0.91205 1.28857 1.21088 1.13218 1.05567 1.08061 0.80678 0.75726 0.75685 1.93502 1.82365 1.35805 1.85277 1.93530 1.82072 1.80610 1.42545 1.30027 1.13309 1.16275 1.12762 1.21078 0.98709 0.99016 0.93686 1.22761 0.89575 0.96312 1.03325 1.62467 1.04587 1.54280 1.03679 1.21253 0.95443 0.97396 0.88055 1.19591 1.03461 0.94709 0.97171 1.20900 0.95928 0.99092 0.92010 1.20407 1.07930 0.91911 1.02280 1.19954 0.93756 0.92140 0.87884 1.83939 1.72209 1.20653 1.37539 1.21838 1.34803 0.80889 1.11056 0.88094 1.26562 0.95905 1.05293 0.94394 1.70191 1.36248 1.37697 1.11963 0.84549 0.78533 0.73927 0.79338 1.17347 1.19420 1.19524 1.21254 1.06235 1.01361 0.97469 1.20901 0.97004 0.92985 0.95632 0.90547 0.90806 0.90709 0.81981 0.82279 0.83242 0.84774 0.91678 0.90814 0.89522 0.90322 0.86949 0.92287 0.83905 0.87534 0.91952 0.86817 0.84124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.31 7.69 71.98 0.55 -0.76 16 2 C 0.07 0.78 2.09 42.65 0.09 0.87 16 3 H 0.07 0.85 6.39 -2.38 -0.02 0.84 16 4 C -0.56 -5.40 5.38 69.76 0.38 -5.03 16 5 S 2.41 41.12 5.17 -56.49 -0.29 40.83 16 6 O -0.97 -22.20 15.50 -127.38 -1.97 -24.17 16 7 O -0.99 -24.24 18.10 -127.38 -2.31 -26.54 16 8 C -0.59 -9.66 5.70 72.27 0.41 -9.25 16 9 C -0.09 -1.67 5.60 30.85 0.17 -1.49 16 10 C 0.01 0.16 4.92 86.52 0.43 0.58 16 11 N -0.53 -8.34 4.06 -891.83 -3.62 -11.97 16 12 C 0.10 1.76 3.70 85.56 0.32 2.08 16 13 C -0.15 -3.86 5.10 -19.83 -0.10 -3.96 16 14 C -0.06 -1.81 8.43 22.25 0.19 -1.62 16 15 C -0.21 -8.31 9.99 22.39 0.22 -8.09 16 16 C 0.11 5.41 6.65 22.58 0.15 5.56 16 17 O -0.24 -14.06 9.76 -22.77 -0.22 -14.28 16 18 C -0.41 -23.57 9.49 67.92 0.64 -22.93 16 19 H 0.10 5.32 5.20 -2.91 -0.02 5.31 16 20 C -0.02 -1.38 5.49 84.83 0.47 -0.91 16 21 N -0.92 -56.47 13.67 21.61 0.30 -56.18 16 22 Si 1.02 42.48 29.55 68.60 2.03 44.51 16 23 H -0.25 -9.58 7.11 99.48 0.71 -8.87 16 24 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 25 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 26 C -0.24 -10.00 9.17 22.39 0.21 -9.80 16 27 C -0.05 -1.42 9.69 22.25 0.22 -1.20 16 28 H 0.08 0.43 8.11 -2.39 -0.02 0.41 16 29 H 0.07 0.59 6.04 -2.39 -0.01 0.58 16 30 H 0.07 0.58 7.78 -2.38 -0.02 0.56 16 31 H 0.16 0.83 8.06 -2.39 -0.02 0.81 16 32 H 0.16 1.01 8.14 -2.38 -0.02 0.99 16 33 H 0.15 2.07 8.08 -2.51 -0.02 2.05 16 34 H 0.13 1.98 8.14 -2.53 -0.02 1.96 16 35 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 37 H 0.09 1.64 4.84 -2.39 -0.01 1.63 16 38 H 0.08 1.35 5.42 -2.39 -0.01 1.34 16 39 H 0.11 1.49 5.51 -2.39 -0.01 1.47 16 40 H 0.06 0.86 7.85 -2.39 -0.02 0.84 16 41 H 0.14 3.26 6.97 -2.91 -0.02 3.24 16 42 H 0.11 4.36 8.06 -2.91 -0.02 4.34 16 43 H 0.27 15.20 8.31 -92.70 -0.77 14.43 16 44 H 0.11 4.84 5.64 -2.91 -0.02 4.83 16 45 H 0.14 3.33 8.06 -2.91 -0.02 3.30 16 Total: -1.00 -80.39 359.12 -0.75 -81.14 By element: Atomic # 1 Polarization: 21.61 SS G_CDS: 1.01 Total: 22.62 kcal Atomic # 6 Polarization: -60.29 SS G_CDS: 4.34 Total: -55.95 kcal Atomic # 7 Polarization: -64.81 SS G_CDS: -3.33 Total: -68.14 kcal Atomic # 8 Polarization: -60.50 SS G_CDS: -4.50 Total: -65.00 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.51 kcal Atomic # 16 Polarization: 41.12 SS G_CDS: -0.29 Total: 40.83 kcal Total: -80.39 -0.75 -81.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933312757.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.771 kcal (2) G-P(sol) polarization free energy of solvation -80.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds