Wall clock time and date at job start Sat Apr 11 2020 05:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.46718 * 2 1 4 4 C 1.53000 * 109.47092 * 119.99183 * 2 1 3 5 5 C 1.52993 * 109.47260 * 184.99785 * 4 2 1 6 6 S 1.81404 * 109.47144 * 180.02562 * 5 4 2 7 7 C 1.81410 * 101.92014 * 180.02562 * 6 5 4 8 8 O 1.42100 * 108.58053 * 294.48777 * 6 5 4 9 9 O 1.42097 * 108.57711 * 65.51885 * 6 5 4 10 10 N 1.46499 * 109.47266 * 239.99473 * 2 1 3 11 11 C 1.34773 * 119.99713 * 84.99697 * 10 2 1 12 12 O 1.21278 * 120.00577 * 0.02562 * 11 10 2 13 13 C 1.50701 * 119.99901 * 179.97438 * 11 10 2 14 14 H 1.09001 * 109.47160 * 300.00469 * 13 11 10 15 15 C 1.50698 * 109.46971 * 60.00363 * 13 11 10 16 16 H 1.07996 * 120.00538 * 33.94038 * 15 13 11 17 17 C 1.37883 * 119.99971 * 213.94599 * 15 13 11 18 18 N 1.31517 * 120.00017 * 6.38749 * 17 15 13 19 19 Si 1.86802 * 119.99930 * 186.39388 * 17 15 13 20 20 H 1.48500 * 109.46953 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47061 * 119.99550 * 19 17 15 22 22 H 1.48503 * 109.46770 * 239.99416 * 19 17 15 23 23 C 1.50700 * 109.47405 * 180.02562 * 13 11 10 24 24 C 1.38237 * 119.99890 * 293.85198 * 23 13 11 25 25 C 1.38231 * 120.00110 * 179.78775 * 24 23 13 26 26 C 1.38243 * 119.99912 * 0.43846 * 25 24 23 27 27 C 1.38236 * 119.99687 * 359.81155 * 26 25 24 28 28 C 1.38235 * 120.00317 * 359.97438 * 27 26 25 29 29 H 1.09001 * 109.46834 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47093 * 300.00620 * 1 2 3 31 31 H 1.09002 * 109.46739 * 60.00507 * 1 2 3 32 32 H 1.08994 * 109.47319 * 305.00445 * 4 2 1 33 33 H 1.09010 * 109.46750 * 65.00181 * 4 2 1 34 34 H 1.09004 * 109.47412 * 300.00467 * 5 4 2 35 35 H 1.09002 * 109.47009 * 60.00839 * 5 4 2 36 36 H 1.09005 * 109.46703 * 60.00060 * 7 6 5 37 37 H 1.08996 * 109.46631 * 180.02562 * 7 6 5 38 38 H 1.08994 * 109.46889 * 300.00198 * 7 6 5 39 39 H 0.97000 * 119.99770 * 265.00577 * 10 2 1 40 40 H 0.96996 * 119.99767 * 180.02562 * 18 17 15 41 41 H 1.08000 * 119.99989 * 359.97438 * 24 23 13 42 42 H 1.07998 * 120.00504 * 180.27286 * 25 24 23 43 43 H 1.07997 * 120.00102 * 179.83232 * 26 25 24 44 44 H 1.07997 * 119.99553 * 179.97438 * 27 26 25 45 45 H 1.07992 * 119.99896 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7211 1.2493 5 6 3.5648 -0.6132 1.3138 6 16 4.1695 -1.4688 2.7947 7 6 5.9614 -1.2161 2.6680 8 8 3.6954 -0.7777 3.9422 9 8 3.8969 -2.8567 2.6587 10 7 2.0184 -0.6907 -1.1961 11 6 2.1471 -0.0184 -2.3571 12 8 1.8590 1.1584 -2.4116 13 6 2.6500 -0.7288 -3.5873 14 1 3.6493 -1.1206 -3.3977 15 6 1.7207 -1.8657 -3.9261 16 1 0.6614 -1.7718 -3.7377 17 6 2.2228 -3.0260 -4.4764 18 7 3.5226 -3.1912 -4.5898 19 14 1.0567 -4.3631 -5.0611 20 1 -0.3454 -3.9359 -4.8232 21 1 1.2631 -4.5999 -6.5125 22 1 1.3258 -5.6168 -4.3119 23 6 2.7011 0.2395 -4.7409 24 6 1.5308 0.7712 -5.2495 25 6 1.5779 1.6627 -6.3048 26 6 2.7948 2.0158 -6.8575 27 6 3.9648 1.4802 -6.3523 28 6 3.9180 0.5920 -5.2941 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.6054 -0.2615 2.1370 33 1 1.7517 -1.7714 1.2058 34 1 3.9995 -1.0728 0.4261 35 1 3.8532 0.4371 1.3574 36 1 6.1789 -0.1479 2.6723 37 1 6.4561 -1.6915 3.5149 38 1 6.3258 -1.6573 1.7403 39 1 2.2490 -1.6319 -1.1524 40 1 3.8757 -4.0072 -4.9773 41 1 0.5798 0.4922 -4.8203 42 1 0.6639 2.0815 -6.6992 43 1 2.8315 2.7103 -7.6837 44 1 4.9154 1.7557 -6.7844 45 1 4.8320 0.1733 -4.8998 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361768394.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:21 Heat of formation + Delta-G solvation = -120.979525 kcal Electronic energy + Delta-G solvation = -27598.402339 eV Core-core repulsion = 23706.706607 eV Total energy + Delta-G solvation = -3891.695732 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.92696 -39.48902 -37.94882 -37.37970 -36.97052 -35.50020 -33.30415 -32.80323 -31.53448 -31.04185 -30.24788 -28.93167 -25.89609 -25.21029 -23.23903 -22.92263 -21.63540 -20.97338 -19.74117 -18.67621 -17.87019 -17.73017 -17.39290 -17.15168 -16.90509 -16.76802 -16.27316 -15.83166 -15.65026 -15.19707 -15.04835 -14.72067 -14.47884 -14.08856 -14.01435 -13.96681 -13.89897 -13.79906 -13.40042 -13.28585 -13.08885 -13.01955 -12.98921 -12.87859 -12.81238 -12.72682 -12.39057 -12.18483 -12.06737 -11.95322 -11.86645 -11.64530 -11.27148 -11.22471 -10.69332 -10.35583 -9.85023 -9.55848 -9.25946 -8.22545 -6.31004 -0.87862 0.75498 0.80493 1.39938 1.44719 1.53189 1.91093 1.99945 2.42983 2.57553 2.74289 3.08085 3.17245 3.27674 3.61947 3.80346 3.90913 4.13509 4.22748 4.25992 4.30342 4.38806 4.40507 4.45064 4.51664 4.59816 4.62091 4.72629 4.83936 4.88883 4.97543 4.99139 5.02379 5.12441 5.14466 5.32380 5.37824 5.45897 5.65501 5.77726 5.79126 5.84893 5.96600 6.24414 6.40985 6.73736 6.84504 7.35592 7.61237 8.85870 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010756 B = 0.003510 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2602.474849 B = 7975.073441 C = 8871.576237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.147 3.853 3 H 0.079 0.921 4 C -0.121 4.121 5 C -0.610 4.610 6 S 2.435 3.565 7 C -0.642 4.642 8 O -0.979 6.979 9 O -0.985 6.985 10 N -0.715 5.715 11 C 0.529 3.471 12 O -0.592 6.592 13 C 0.048 3.952 14 H 0.073 0.927 15 C -0.513 4.513 16 H 0.050 0.950 17 C 0.038 3.962 18 N -0.904 5.904 19 Si 0.947 3.053 20 H -0.271 1.271 21 H -0.285 1.285 22 H -0.274 1.274 23 C -0.039 4.039 24 C -0.110 4.110 25 C -0.136 4.136 26 C -0.144 4.144 27 C -0.129 4.129 28 C -0.143 4.143 29 H 0.061 0.939 30 H 0.087 0.913 31 H 0.035 0.965 32 H 0.111 0.889 33 H 0.086 0.914 34 H 0.138 0.862 35 H 0.156 0.844 36 H 0.153 0.847 37 H 0.139 0.861 38 H 0.145 0.855 39 H 0.408 0.592 40 H 0.267 0.733 41 H 0.093 0.907 42 H 0.134 0.866 43 H 0.146 0.854 44 H 0.140 0.860 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.070 5.505 9.543 11.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.042 3.958 3 H 0.097 0.903 4 C -0.159 4.159 5 C -0.739 4.739 6 S 2.622 3.378 7 C -0.795 4.795 8 O -0.977 6.977 9 O -0.983 6.983 10 N -0.366 5.366 11 C 0.318 3.682 12 O -0.473 6.473 13 C 0.027 3.973 14 H 0.091 0.909 15 C -0.551 4.551 16 H 0.068 0.932 17 C -0.164 4.164 18 N -0.541 5.541 19 Si 0.773 3.227 20 H -0.196 1.196 21 H -0.211 1.211 22 H -0.200 1.200 23 C -0.040 4.040 24 C -0.129 4.129 25 C -0.154 4.154 26 C -0.162 4.162 27 C -0.147 4.147 28 C -0.161 4.161 29 H 0.080 0.920 30 H 0.106 0.894 31 H 0.054 0.946 32 H 0.129 0.871 33 H 0.105 0.895 34 H 0.157 0.843 35 H 0.175 0.825 36 H 0.171 0.829 37 H 0.157 0.843 38 H 0.163 0.837 39 H 0.243 0.757 40 H 0.077 0.923 41 H 0.111 0.889 42 H 0.152 0.848 43 H 0.164 0.836 44 H 0.158 0.842 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 3.518 5.729 10.153 12.177 hybrid contribution -0.059 -1.062 -1.107 1.535 sum 3.459 4.667 9.046 10.750 Atomic orbital electron populations 1.22174 0.95171 1.02502 1.02204 1.20904 0.94216 0.96983 0.83711 0.90273 1.21678 0.91943 1.03191 0.99131 1.30336 1.05860 1.16564 1.21185 1.07131 0.79681 0.74552 0.76407 1.30121 1.22055 1.14003 1.13301 1.93537 1.80451 1.75978 1.47688 1.93554 1.84896 1.32691 1.87124 1.45990 1.67308 1.14385 1.08949 1.21288 0.75472 0.85994 0.85399 1.90548 1.53004 1.17831 1.85930 1.18050 0.99627 0.92142 0.87466 0.90947 1.20743 0.93007 0.98026 1.43285 0.93162 1.25494 0.96246 0.99733 0.94907 1.69954 1.12237 1.27769 1.44116 0.85675 0.79610 0.79449 0.77993 1.19585 1.21109 1.19991 1.20158 0.93044 0.93656 0.97118 1.20843 0.97466 0.97540 0.97001 1.21326 0.98977 0.98379 0.96742 1.21273 0.92042 1.01616 1.01251 1.21309 0.99306 0.97463 0.96628 1.21155 0.97067 0.99265 0.98615 0.91979 0.89395 0.94593 0.87104 0.89494 0.84347 0.82548 0.82901 0.84259 0.83690 0.75688 0.92346 0.88857 0.84847 0.83641 0.84214 0.87241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.37 9.48 71.98 0.68 -3.69 16 2 C 0.15 4.06 2.57 44.99 0.12 4.17 16 3 H 0.08 2.31 7.58 -2.39 -0.02 2.30 16 4 C -0.12 -2.50 4.76 30.59 0.15 -2.35 16 5 C -0.61 -10.05 5.69 71.98 0.41 -9.64 16 6 S 2.44 40.72 5.36 -56.49 -0.30 40.42 16 7 C -0.64 -5.70 10.62 113.37 1.20 -4.49 16 8 O -0.98 -22.73 18.10 -127.37 -2.30 -25.03 16 9 O -0.99 -25.59 18.10 -127.37 -2.31 -27.89 16 10 N -0.71 -24.60 4.43 -442.53 -1.96 -26.57 16 11 C 0.53 22.75 7.01 87.66 0.61 23.36 16 12 O -0.59 -27.91 15.08 -3.02 -0.05 -27.96 16 13 C 0.05 2.28 2.44 -13.03 -0.03 2.24 16 14 H 0.07 3.62 7.00 -2.39 -0.02 3.60 16 15 C -0.51 -25.59 7.46 25.60 0.19 -25.40 16 16 H 0.05 2.58 7.82 -2.91 -0.02 2.56 16 17 C 0.04 1.92 5.45 84.66 0.46 2.39 16 18 N -0.90 -47.10 12.78 21.45 0.27 -46.83 16 19 Si 0.95 40.93 29.54 68.60 2.03 42.96 16 20 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 21 H -0.29 -12.44 7.11 99.48 0.71 -11.74 16 22 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 23 C -0.04 -1.80 4.30 -19.87 -0.09 -1.89 16 24 C -0.11 -4.92 8.31 22.27 0.19 -4.74 16 25 C -0.14 -5.08 10.05 22.27 0.22 -4.85 16 26 C -0.14 -4.81 10.05 22.27 0.22 -4.59 16 27 C -0.13 -4.58 10.05 22.27 0.22 -4.36 16 28 C -0.14 -6.06 9.67 22.27 0.22 -5.84 16 29 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.09 1.83 8.14 -2.39 -0.02 1.82 16 31 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 34 H 0.14 2.32 7.75 -2.39 -0.02 2.30 16 35 H 0.16 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.15 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.14 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.14 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.41 13.62 8.49 -92.71 -0.79 12.84 16 40 H 0.27 13.32 8.31 -92.71 -0.77 12.55 16 41 H 0.09 4.36 7.89 -2.91 -0.02 4.33 16 42 H 0.13 4.11 8.06 -2.91 -0.02 4.09 16 43 H 0.15 3.68 8.06 -2.91 -0.02 3.65 16 44 H 0.14 3.94 8.06 -2.91 -0.02 3.92 16 45 H 0.11 4.53 7.95 -2.91 -0.02 4.50 16 Total: -1.00 -75.12 392.88 0.36 -74.76 By element: Atomic # 1 Polarization: 35.61 SS G_CDS: 0.20 Total: 35.81 kcal Atomic # 6 Polarization: -44.45 SS G_CDS: 4.78 Total: -39.67 kcal Atomic # 7 Polarization: -71.71 SS G_CDS: -1.69 Total: -73.39 kcal Atomic # 8 Polarization: -76.23 SS G_CDS: -4.66 Total: -80.88 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 2.03 Total: 42.96 kcal Atomic # 16 Polarization: 40.72 SS G_CDS: -0.30 Total: 40.42 kcal Total: -75.12 0.36 -74.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361768394.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.221 kcal (2) G-P(sol) polarization free energy of solvation -75.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds