Wall clock time and date at job start Sat Apr 11 2020 05:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.40436 * 2 1 4 4 C 1.54293 * 109.40549 * 240.16414 * 2 1 3 5 5 N 1.48182 * 110.69322 * 200.57542 * 4 2 1 6 6 S 1.65593 * 118.51775 * 138.77131 * 5 4 2 7 7 O 1.42098 * 106.40616 * 208.05630 * 6 5 4 8 8 O 1.42105 * 106.40064 * 340.97505 * 6 5 4 9 9 C 1.76199 * 107.21812 * 94.51213 * 6 5 4 10 10 C 1.38636 * 119.75213 * 269.72274 * 9 6 5 11 11 C 1.37616 * 120.25021 * 179.76172 * 10 9 6 12 12 C 1.40717 * 119.74326 * 0.49306 * 11 10 9 13 13 C 1.41396 * 120.24454 * 179.78250 * 12 11 10 14 14 H 1.07994 * 120.00394 * 204.99789 * 13 12 11 15 15 C 1.39946 * 119.99654 * 25.00852 * 13 12 11 16 16 N 1.30824 * 120.00415 * 16.72808 * 15 13 12 17 17 Si 1.86795 * 119.99837 * 196.72942 * 15 13 12 18 18 H 1.48504 * 109.47440 * 89.99672 * 17 15 13 19 19 H 1.48502 * 109.47417 * 209.99640 * 17 15 13 20 20 H 1.48499 * 109.47374 * 329.99627 * 17 15 13 21 21 C 1.40715 * 119.50997 * 359.77017 * 12 11 10 22 22 C 1.37614 * 119.74766 * 359.97438 * 21 12 11 23 23 C 1.44460 * 122.97016 * 318.79362 * 5 4 2 24 24 H 1.09004 * 109.49791 * 328.95449 * 23 5 4 25 25 C 1.52998 * 109.49430 * 208.86985 * 23 5 4 26 26 C 1.54874 * 109.33150 * 88.91488 * 23 5 4 27 27 C 1.47687 * 109.67966 * 290.10134 * 26 23 5 28 28 O 1.40525 * 109.40423 * 119.83644 * 2 1 3 29 29 H 1.09007 * 109.47282 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47602 * 299.99970 * 1 2 3 31 31 H 1.09000 * 109.47422 * 59.99953 * 1 2 3 32 32 H 1.08999 * 109.23353 * 320.88189 * 4 2 1 33 33 H 1.08995 * 109.23273 * 80.26179 * 4 2 1 34 34 H 1.08002 * 119.87325 * 0.02562 * 10 9 6 35 35 H 1.08004 * 120.12898 * 180.28329 * 11 10 9 36 36 H 0.96993 * 120.00241 * 180.02562 * 16 15 13 37 37 H 1.08001 * 120.12386 * 180.02562 * 21 12 11 38 38 H 1.08002 * 119.87543 * 180.02562 * 22 21 12 39 39 H 1.09003 * 109.46934 * 51.49832 * 25 23 5 40 40 H 1.08997 * 109.47296 * 171.49473 * 25 23 5 41 41 H 1.08996 * 109.47435 * 291.49912 * 25 23 5 42 42 H 1.09004 * 109.43409 * 50.16232 * 26 23 5 43 43 H 1.08996 * 109.43733 * 170.08363 * 26 23 5 44 44 H 1.09002 * 108.65075 * 181.87963 * 27 26 23 45 45 H 1.09001 * 108.64520 * 299.85694 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8921 1.0281 0.0000 4 6 2.0426 -0.7240 -1.2624 5 7 3.4406 -1.1778 -1.0744 6 16 3.8673 -2.6767 -1.6341 7 8 4.9347 -3.1242 -0.8095 8 8 2.6569 -3.4025 -1.8004 9 6 4.5423 -2.4586 -3.2470 10 6 3.7099 -2.5132 -4.3543 11 6 4.2254 -2.3393 -5.6183 12 6 5.6046 -2.1157 -5.7852 13 6 6.1462 -1.9403 -7.0794 14 1 7.1853 -2.1683 -7.2655 15 6 5.3358 -1.4708 -8.1193 16 7 4.1953 -0.8900 -7.8486 17 14 5.8826 -1.6737 -9.8939 18 1 5.3820 -2.9685 -10.4213 19 1 5.3346 -0.5613 -10.7110 20 1 7.3660 -1.6524 -9.9604 21 6 6.4408 -2.0677 -4.6544 22 6 5.9026 -2.2390 -3.3995 23 6 4.4481 -0.3719 -0.4245 24 1 4.2418 0.6832 -0.6044 25 6 5.8263 -0.7263 -0.9865 26 6 4.4238 -0.6509 1.0987 27 6 3.1887 -0.0942 1.6867 28 8 1.9968 -0.6594 1.1497 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.4088 -1.5878 -1.4632 33 1 1.9977 -0.0414 -2.1109 34 1 2.6522 -2.6887 -4.2240 35 1 3.5744 -2.3777 -6.4793 36 1 3.6334 -0.5650 -8.5694 37 1 7.5007 -1.8963 -4.7710 38 1 6.5424 -2.2022 -2.5302 39 1 5.7983 -0.6772 -2.0751 40 1 6.5651 -0.0190 -0.6099 41 1 6.0972 -1.7351 -0.6752 42 1 4.4546 -1.7268 1.2709 43 1 5.2901 -0.1836 1.5669 44 1 3.2046 -0.2701 2.7623 45 1 3.1729 0.9813 1.5105 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001414376406.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:13 Heat of formation + Delta-G solvation = -91.056502 kcal Electronic energy + Delta-G solvation = -28999.197133 eV Core-core repulsion = 25108.798961 eV Total energy + Delta-G solvation = -3890.398172 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.67674 -37.68164 -36.97063 -35.81078 -35.06025 -34.06827 -33.81766 -30.37753 -30.26747 -29.82841 -28.84068 -25.82797 -25.48690 -23.69891 -21.66875 -21.49551 -21.21913 -20.72877 -18.17738 -17.60999 -17.23329 -16.78751 -16.38336 -16.16008 -15.58342 -15.42190 -14.73242 -14.27647 -14.20582 -13.86238 -13.43595 -13.31931 -13.09559 -12.96522 -12.80372 -12.56692 -12.40400 -12.28207 -12.05412 -11.91344 -11.81863 -11.67578 -11.45226 -11.37790 -11.21802 -11.17425 -10.98015 -10.89224 -10.76517 -10.47828 -10.39083 -10.02704 -9.68825 -9.56964 -9.53850 -9.50164 -8.58064 -7.94291 -7.66159 -7.14167 -4.80956 1.25766 2.24623 2.87126 2.88699 2.91911 2.92851 3.53511 3.65852 3.81224 4.24032 4.50047 4.71288 4.77902 4.90114 5.05253 5.07705 5.19496 5.29447 5.34549 5.38955 5.44962 5.56534 5.64802 5.71093 5.78595 5.81876 5.91420 5.95859 6.03581 6.05076 6.11607 6.18949 6.27682 6.40975 6.66984 6.69288 6.76929 6.89308 7.03621 7.12554 7.33491 7.35994 7.41565 7.63217 7.76613 7.96210 8.31702 8.50928 8.64478 9.77186 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.019108 B = 0.003491 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.965857 B = 8017.695165 C = 8519.213245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.081 3.919 3 H 0.061 0.939 4 C 0.092 3.908 5 N -0.990 5.990 6 S 2.693 3.307 7 O -0.981 6.981 8 O -0.985 6.985 9 C -0.787 4.787 10 C -0.015 4.015 11 C -0.182 4.182 12 C 0.140 3.860 13 C -0.437 4.437 14 H 0.087 0.913 15 C 0.072 3.928 16 N -0.768 5.768 17 Si 0.918 3.082 18 H -0.263 1.263 19 H -0.274 1.274 20 H -0.258 1.258 21 C -0.239 4.239 22 C -0.006 4.006 23 C 0.164 3.836 24 H 0.074 0.926 25 C -0.243 4.243 26 C -0.173 4.173 27 C 0.066 3.934 28 O -0.364 6.364 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.100 0.900 33 H 0.071 0.929 34 H 0.102 0.898 35 H 0.123 0.877 36 H 0.288 0.712 37 H 0.100 0.900 38 H 0.114 0.886 39 H 0.088 0.912 40 H 0.071 0.929 41 H 0.118 0.882 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.081 0.919 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.061 5.999 10.343 12.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.020 3.980 3 H 0.079 0.921 4 C -0.034 4.034 5 N -0.825 5.825 6 S 2.794 3.206 7 O -0.971 6.971 8 O -0.975 6.975 9 C -0.883 4.883 10 C -0.036 4.036 11 C -0.203 4.203 12 C 0.136 3.864 13 C -0.464 4.464 14 H 0.105 0.895 15 C -0.150 4.150 16 N -0.391 5.391 17 Si 0.741 3.259 18 H -0.188 1.188 19 H -0.199 1.199 20 H -0.182 1.182 21 C -0.260 4.260 22 C -0.025 4.025 23 C 0.057 3.943 24 H 0.092 0.908 25 C -0.300 4.300 26 C -0.212 4.212 27 C -0.011 4.011 28 O -0.282 6.282 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.119 0.881 33 H 0.089 0.911 34 H 0.120 0.880 35 H 0.140 0.860 36 H 0.100 0.900 37 H 0.118 0.882 38 H 0.131 0.869 39 H 0.106 0.894 40 H 0.090 0.910 41 H 0.136 0.864 42 H 0.102 0.898 43 H 0.102 0.898 44 H 0.099 0.901 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.509 5.228 10.832 12.529 hybrid contribution 0.573 0.818 -1.617 1.901 sum -2.936 6.045 9.214 11.405 Atomic orbital electron populations 1.21920 0.93284 1.03432 1.02386 1.22333 0.94888 0.95133 0.85597 0.92079 1.22526 0.81745 1.01535 0.97578 1.57349 1.15235 1.37013 1.72876 1.01365 0.72667 0.72086 0.74502 1.93365 1.55841 1.79740 1.68179 1.93441 1.46862 1.69497 1.87728 1.29262 1.03481 1.37231 1.18326 1.20249 0.96751 0.94033 0.92523 1.21339 0.96257 1.06950 0.95729 1.17855 0.92041 0.84131 0.92352 1.19949 0.98035 1.35466 0.92975 0.89460 1.26122 0.94082 0.92199 1.02550 1.69809 1.09839 1.23445 1.35969 0.86141 0.80480 0.79227 0.80067 1.18792 1.19885 1.18211 1.21072 0.98679 1.13890 0.92364 1.20414 0.92455 0.92484 0.97179 1.20583 0.87471 0.95461 0.90761 0.90767 1.23586 0.95631 1.06926 1.03895 1.22169 0.98220 1.04112 0.96734 1.21471 0.85332 0.96365 0.97884 1.87434 1.40633 1.57804 1.42365 0.91296 0.91878 0.90970 0.88135 0.91069 0.88037 0.85957 0.90034 0.88211 0.86864 0.89388 0.90976 0.86397 0.89816 0.89780 0.90072 0.93582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.46 37.16 0.35 -1.18 16 2 C 0.08 0.98 2.93 -26.06 -0.08 0.90 16 3 H 0.06 0.64 7.20 -51.93 -0.37 0.27 16 4 C 0.09 1.34 6.11 -2.44 -0.01 1.32 16 5 N -0.99 -16.29 2.80 -105.62 -0.30 -16.59 16 6 S 2.69 54.09 5.09 -107.50 -0.55 53.54 16 7 O -0.98 -20.39 13.04 -57.17 -0.75 -21.13 16 8 O -0.98 -21.96 15.54 -57.17 -0.89 -22.85 16 9 C -0.79 -17.43 5.61 -39.29 -0.22 -17.65 16 10 C -0.02 -0.36 9.49 -39.66 -0.38 -0.73 16 11 C -0.18 -4.56 8.69 -38.87 -0.34 -4.90 16 12 C 0.14 3.52 5.57 -106.82 -0.60 2.93 16 13 C -0.44 -10.67 9.06 -37.74 -0.34 -11.01 16 14 H 0.09 2.02 7.90 -52.49 -0.41 1.61 16 15 C 0.07 1.65 5.16 -17.34 -0.09 1.57 16 16 N -0.77 -18.13 10.93 55.55 0.61 -17.52 16 17 Si 0.92 16.98 29.59 -169.99 -5.03 11.95 16 18 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 19 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 20 H -0.26 -4.73 7.11 56.52 0.40 -4.32 16 21 C -0.24 -5.59 9.80 -38.87 -0.38 -5.97 16 22 C -0.01 -0.12 7.10 -39.66 -0.28 -0.40 16 23 C 0.16 2.33 2.52 -68.03 -0.17 2.16 16 24 H 0.07 0.93 8.10 -51.93 -0.42 0.51 16 25 C -0.24 -3.64 6.83 37.16 0.25 -3.39 16 26 C -0.17 -2.18 5.29 -28.31 -0.15 -2.33 16 27 C 0.07 0.75 6.04 34.59 0.21 0.96 16 28 O -0.36 -5.04 9.83 -34.09 -0.34 -5.37 16 29 H 0.07 0.75 8.13 -51.93 -0.42 0.32 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.10 1.58 6.46 -51.93 -0.34 1.24 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.10 2.22 7.59 -52.49 -0.40 1.82 16 35 H 0.12 3.10 6.16 -52.48 -0.32 2.78 16 36 H 0.29 6.10 8.30 -40.82 -0.34 5.77 16 37 H 0.10 2.14 8.06 -52.49 -0.42 1.71 16 38 H 0.11 2.20 5.27 -52.49 -0.28 1.93 16 39 H 0.09 1.48 4.60 -51.93 -0.24 1.24 16 40 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.12 1.97 4.51 -51.93 -0.23 1.74 16 42 H 0.08 1.25 7.46 -51.93 -0.39 0.86 16 43 H 0.08 0.84 8.13 -51.93 -0.42 0.42 16 44 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.05 0.44 7.27 -51.93 -0.38 0.06 16 LS Contribution 353.64 15.07 5.33 5.33 Total: -1.00 -29.32 353.64 -10.42 -39.75 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: -6.30 Total: 10.61 kcal Atomic # 6 Polarization: -35.50 SS G_CDS: -2.22 Total: -37.72 kcal Atomic # 7 Polarization: -34.42 SS G_CDS: 0.31 Total: -34.11 kcal Atomic # 8 Polarization: -47.38 SS G_CDS: -1.97 Total: -49.35 kcal Atomic # 14 Polarization: 16.98 SS G_CDS: -5.03 Total: 11.95 kcal Atomic # 16 Polarization: 54.09 SS G_CDS: -0.55 Total: 53.54 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.32 -10.42 -39.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414376406.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.308 kcal (2) G-P(sol) polarization free energy of solvation -29.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds