Wall clock time and date at job start Sat Apr 11 2020 05:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.40436 * 2 1 4 4 C 1.54293 * 109.40549 * 240.16414 * 2 1 3 5 5 N 1.48182 * 110.69322 * 200.57542 * 4 2 1 6 6 S 1.65593 * 118.51775 * 138.77131 * 5 4 2 7 7 O 1.42098 * 106.40616 * 208.05630 * 6 5 4 8 8 O 1.42105 * 106.40064 * 340.97505 * 6 5 4 9 9 C 1.76199 * 107.21812 * 94.51213 * 6 5 4 10 10 C 1.38636 * 119.75213 * 269.72274 * 9 6 5 11 11 C 1.37616 * 120.25021 * 179.76172 * 10 9 6 12 12 C 1.40717 * 119.74326 * 0.49306 * 11 10 9 13 13 C 1.41396 * 120.24454 * 179.78250 * 12 11 10 14 14 H 1.07994 * 120.00394 * 204.99789 * 13 12 11 15 15 C 1.39946 * 119.99654 * 25.00852 * 13 12 11 16 16 N 1.30824 * 120.00415 * 16.72808 * 15 13 12 17 17 Si 1.86795 * 119.99837 * 196.72942 * 15 13 12 18 18 H 1.48504 * 109.47440 * 89.99672 * 17 15 13 19 19 H 1.48502 * 109.47417 * 209.99640 * 17 15 13 20 20 H 1.48499 * 109.47374 * 329.99627 * 17 15 13 21 21 C 1.40715 * 119.50997 * 359.77017 * 12 11 10 22 22 C 1.37614 * 119.74766 * 359.97438 * 21 12 11 23 23 C 1.44460 * 122.97016 * 318.79362 * 5 4 2 24 24 H 1.09004 * 109.49791 * 328.95449 * 23 5 4 25 25 C 1.52998 * 109.49430 * 208.86985 * 23 5 4 26 26 C 1.54874 * 109.33150 * 88.91488 * 23 5 4 27 27 C 1.47687 * 109.67966 * 290.10134 * 26 23 5 28 28 O 1.40525 * 109.40423 * 119.83644 * 2 1 3 29 29 H 1.09007 * 109.47282 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47602 * 299.99970 * 1 2 3 31 31 H 1.09000 * 109.47422 * 59.99953 * 1 2 3 32 32 H 1.08999 * 109.23353 * 320.88189 * 4 2 1 33 33 H 1.08995 * 109.23273 * 80.26179 * 4 2 1 34 34 H 1.08002 * 119.87325 * 0.02562 * 10 9 6 35 35 H 1.08004 * 120.12898 * 180.28329 * 11 10 9 36 36 H 0.96993 * 120.00241 * 180.02562 * 16 15 13 37 37 H 1.08001 * 120.12386 * 180.02562 * 21 12 11 38 38 H 1.08002 * 119.87543 * 180.02562 * 22 21 12 39 39 H 1.09003 * 109.46934 * 51.49832 * 25 23 5 40 40 H 1.08997 * 109.47296 * 171.49473 * 25 23 5 41 41 H 1.08996 * 109.47435 * 291.49912 * 25 23 5 42 42 H 1.09004 * 109.43409 * 50.16232 * 26 23 5 43 43 H 1.08996 * 109.43733 * 170.08363 * 26 23 5 44 44 H 1.09002 * 108.65075 * 181.87963 * 27 26 23 45 45 H 1.09001 * 108.64520 * 299.85694 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8921 1.0281 0.0000 4 6 2.0426 -0.7240 -1.2624 5 7 3.4406 -1.1778 -1.0744 6 16 3.8673 -2.6767 -1.6341 7 8 4.9347 -3.1242 -0.8095 8 8 2.6569 -3.4025 -1.8004 9 6 4.5423 -2.4586 -3.2470 10 6 3.7099 -2.5132 -4.3543 11 6 4.2254 -2.3393 -5.6183 12 6 5.6046 -2.1157 -5.7852 13 6 6.1462 -1.9403 -7.0794 14 1 7.1853 -2.1683 -7.2655 15 6 5.3358 -1.4708 -8.1193 16 7 4.1953 -0.8900 -7.8486 17 14 5.8826 -1.6737 -9.8939 18 1 5.3820 -2.9685 -10.4213 19 1 5.3346 -0.5613 -10.7110 20 1 7.3660 -1.6524 -9.9604 21 6 6.4408 -2.0677 -4.6544 22 6 5.9026 -2.2390 -3.3995 23 6 4.4481 -0.3719 -0.4245 24 1 4.2418 0.6832 -0.6044 25 6 5.8263 -0.7263 -0.9865 26 6 4.4238 -0.6509 1.0987 27 6 3.1887 -0.0942 1.6867 28 8 1.9968 -0.6594 1.1497 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.4088 -1.5878 -1.4632 33 1 1.9977 -0.0414 -2.1109 34 1 2.6522 -2.6887 -4.2240 35 1 3.5744 -2.3777 -6.4793 36 1 3.6334 -0.5650 -8.5694 37 1 7.5007 -1.8963 -4.7710 38 1 6.5424 -2.2022 -2.5302 39 1 5.7983 -0.6772 -2.0751 40 1 6.5651 -0.0190 -0.6099 41 1 6.0972 -1.7351 -0.6752 42 1 4.4546 -1.7268 1.2709 43 1 5.2901 -0.1836 1.5669 44 1 3.2046 -0.2701 2.7623 45 1 3.1729 0.9813 1.5105 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001414376406.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:13 Heat of formation + Delta-G solvation = -109.002297 kcal Electronic energy + Delta-G solvation = -28999.975321 eV Core-core repulsion = 25108.798961 eV Total energy + Delta-G solvation = -3891.176360 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.68827 -39.46611 -38.52828 -37.09781 -36.70069 -35.82662 -34.82402 -32.12770 -31.60878 -31.21455 -30.08022 -27.62023 -26.56331 -24.76300 -23.28429 -22.94993 -22.67042 -21.87838 -19.76686 -19.38629 -18.48194 -18.27519 -17.74621 -17.28787 -17.13250 -16.51293 -16.20017 -15.86987 -15.44903 -15.23453 -15.11076 -14.82060 -14.33197 -14.23575 -13.97817 -13.94475 -13.85141 -13.70925 -13.28797 -13.20866 -13.15784 -13.04564 -12.92129 -12.88609 -12.73704 -12.58174 -12.45541 -12.11847 -11.97854 -11.86037 -11.55491 -11.44614 -11.30724 -11.25722 -11.17698 -10.52930 -9.88697 -9.73153 -9.48942 -8.86987 -6.65817 -0.32328 0.47207 1.04127 1.35334 1.42797 1.50126 2.10444 2.12932 2.51831 2.88381 2.96040 3.47877 3.49517 3.69708 3.79509 3.88224 4.10807 4.22343 4.27116 4.28931 4.35494 4.39005 4.46883 4.63009 4.65883 4.77177 4.80411 4.85315 4.85623 4.92410 4.97976 5.01351 5.02845 5.10864 5.13346 5.23208 5.32638 5.36143 5.51191 5.56520 5.58263 5.74844 5.88755 5.94498 6.14386 6.47939 6.48373 6.67769 6.80232 8.07970 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.019108 B = 0.003491 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.965857 B = 8017.695165 C = 8519.213245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.083 3.917 3 H 0.086 0.914 4 C 0.080 3.920 5 N -0.984 5.984 6 S 2.711 3.289 7 O -0.989 6.989 8 O -1.011 7.011 9 C -0.797 4.797 10 C -0.023 4.023 11 C -0.206 4.206 12 C 0.113 3.887 13 C -0.467 4.467 14 H 0.092 0.908 15 C 0.035 3.965 16 N -0.797 5.797 17 Si 0.991 3.009 18 H -0.262 1.262 19 H -0.263 1.263 20 H -0.253 1.253 21 C -0.258 4.258 22 C -0.001 4.001 23 C 0.154 3.846 24 H 0.101 0.899 25 C -0.244 4.244 26 C -0.169 4.169 27 C 0.058 3.942 28 O -0.388 6.388 29 H 0.053 0.947 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.108 0.892 35 H 0.110 0.890 36 H 0.298 0.702 37 H 0.113 0.887 38 H 0.137 0.863 39 H 0.066 0.934 40 H 0.104 0.896 41 H 0.100 0.900 42 H 0.054 0.946 43 H 0.114 0.886 44 H 0.098 0.902 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.773 7.931 11.280 14.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.023 3.977 3 H 0.104 0.896 4 C -0.045 4.045 5 N -0.822 5.822 6 S 2.810 3.190 7 O -0.979 6.979 8 O -1.002 7.002 9 C -0.890 4.890 10 C -0.043 4.043 11 C -0.227 4.227 12 C 0.109 3.891 13 C -0.494 4.494 14 H 0.110 0.890 15 C -0.184 4.184 16 N -0.420 5.420 17 Si 0.810 3.190 18 H -0.186 1.186 19 H -0.187 1.187 20 H -0.177 1.177 21 C -0.278 4.278 22 C -0.020 4.020 23 C 0.048 3.952 24 H 0.119 0.881 25 C -0.302 4.302 26 C -0.208 4.208 27 C -0.018 4.018 28 O -0.306 6.306 29 H 0.072 0.928 30 H 0.097 0.903 31 H 0.106 0.894 32 H 0.100 0.900 33 H 0.101 0.899 34 H 0.126 0.874 35 H 0.128 0.872 36 H 0.109 0.891 37 H 0.131 0.869 38 H 0.154 0.846 39 H 0.085 0.915 40 H 0.123 0.877 41 H 0.118 0.882 42 H 0.073 0.927 43 H 0.133 0.867 44 H 0.116 0.884 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.208 7.155 11.758 14.133 hybrid contribution 0.457 0.253 -1.760 1.836 sum -2.751 7.408 9.999 12.744 Atomic orbital electron populations 1.21938 0.91948 1.02987 1.03944 1.22440 0.95922 0.95602 0.83781 0.89588 1.22809 0.80342 1.01370 0.99935 1.57113 1.16559 1.36100 1.72385 1.00788 0.71850 0.72824 0.73547 1.93367 1.56171 1.80704 1.67701 1.93402 1.47803 1.71071 1.87877 1.29693 1.03756 1.36036 1.19505 1.20411 0.97400 0.93848 0.92601 1.21336 0.96514 1.08827 0.95977 1.18197 0.92424 0.84912 0.93550 1.20238 0.98750 1.36747 0.93671 0.89035 1.26987 0.93828 0.91126 1.06480 1.69840 1.10786 1.23651 1.37738 0.85053 0.80168 0.79296 0.74444 1.18619 1.18720 1.17657 1.21307 0.99337 1.14606 0.92561 1.20691 0.92689 0.91146 0.97497 1.20923 0.86184 0.96330 0.91715 0.88104 1.23528 0.97262 1.06854 1.02536 1.22174 1.00405 1.02708 0.95530 1.21676 0.83872 0.97691 0.98607 1.87430 1.41622 1.58898 1.42698 0.92787 0.90339 0.89378 0.89974 0.89929 0.87369 0.87173 0.89082 0.86906 0.84569 0.91525 0.87748 0.88205 0.92673 0.86749 0.88422 0.90896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 9.46 71.98 0.68 -2.03 16 2 C 0.08 1.80 2.93 31.03 0.09 1.89 16 3 H 0.09 1.45 7.20 -2.39 -0.02 1.44 16 4 C 0.08 2.26 6.11 86.49 0.53 2.79 16 5 N -0.98 -31.35 2.80 -488.08 -1.37 -32.72 16 6 S 2.71 109.54 5.09 -56.49 -0.29 109.25 16 7 O -0.99 -41.08 13.04 -128.00 -1.67 -42.75 16 8 O -1.01 -46.02 15.54 -128.00 -1.99 -48.01 16 9 C -0.80 -35.92 5.61 22.46 0.13 -35.79 16 10 C -0.02 -1.09 9.49 22.22 0.21 -0.88 16 11 C -0.21 -10.77 8.69 22.73 0.20 -10.57 16 12 C 0.11 5.87 5.57 -21.29 -0.12 5.75 16 13 C -0.47 -23.39 9.06 23.46 0.21 -23.18 16 14 H 0.09 4.33 7.90 -2.91 -0.02 4.30 16 15 C 0.04 1.62 5.16 85.26 0.44 2.06 16 16 N -0.80 -38.37 10.93 21.83 0.24 -38.13 16 17 Si 0.99 34.58 29.59 68.60 2.03 36.61 16 18 H -0.26 -9.00 7.11 99.48 0.71 -8.30 16 19 H -0.26 -8.64 7.11 99.48 0.71 -7.93 16 20 H -0.25 -8.54 7.11 99.48 0.71 -7.84 16 21 C -0.26 -12.28 9.80 22.73 0.22 -12.06 16 22 C 0.00 -0.04 7.10 22.22 0.16 0.12 16 23 C 0.15 4.00 2.52 46.01 0.12 4.12 16 24 H 0.10 2.12 8.10 -2.38 -0.02 2.10 16 25 C -0.24 -6.86 6.83 71.98 0.49 -6.37 16 26 C -0.17 -3.77 5.29 29.57 0.16 -3.61 16 27 C 0.06 1.11 6.04 70.32 0.43 1.53 16 28 O -0.39 -9.82 9.83 -144.91 -1.42 -11.25 16 29 H 0.05 1.13 8.13 -2.38 -0.02 1.11 16 30 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.08 2.61 6.46 -2.39 -0.02 2.59 16 33 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.11 4.94 7.59 -2.91 -0.02 4.92 16 35 H 0.11 5.88 6.16 -2.91 -0.02 5.86 16 36 H 0.30 12.73 8.30 -92.71 -0.77 11.96 16 37 H 0.11 4.90 8.06 -2.91 -0.02 4.88 16 38 H 0.14 5.27 5.27 -2.91 -0.02 5.25 16 39 H 0.07 2.17 4.60 -2.39 -0.01 2.16 16 40 H 0.10 2.20 8.14 -2.39 -0.02 2.19 16 41 H 0.10 3.22 4.51 -2.42 -0.01 3.20 16 42 H 0.05 1.56 7.46 -2.39 -0.02 1.54 16 43 H 0.11 1.84 8.13 -2.39 -0.02 1.82 16 44 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 45 H 0.07 1.03 7.27 -2.39 -0.02 1.02 16 Total: -1.00 -65.38 353.64 0.47 -64.91 By element: Atomic # 1 Polarization: 37.32 SS G_CDS: 1.01 Total: 38.32 kcal Atomic # 6 Polarization: -80.17 SS G_CDS: 3.94 Total: -76.23 kcal Atomic # 7 Polarization: -69.72 SS G_CDS: -1.13 Total: -70.85 kcal Atomic # 8 Polarization: -96.92 SS G_CDS: -5.08 Total: -102.01 kcal Atomic # 14 Polarization: 34.58 SS G_CDS: 2.03 Total: 36.61 kcal Atomic # 16 Polarization: 109.54 SS G_CDS: -0.29 Total: 109.25 kcal Total: -65.38 0.47 -64.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414376406.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.093 kcal (2) G-P(sol) polarization free energy of solvation -65.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds