Wall clock time and date at job start Sat Apr 11 2020 05:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34233 * 117.00210 * 2 1 4 4 O 1.20829 * 119.99778 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99991 * 180.02562 * 3 2 1 6 6 H 1.09000 * 109.46791 * 299.99689 * 5 3 2 7 7 N 1.46896 * 109.46917 * 179.97438 * 5 3 2 8 8 C 1.46904 * 111.00031 * 84.99832 * 7 5 3 9 9 C 1.52997 * 109.47189 * 179.97438 * 8 7 5 10 10 C 1.53005 * 109.47040 * 180.02562 * 9 8 7 11 11 S 1.81003 * 109.46962 * 180.02562 * 10 9 8 12 12 C 1.76194 * 99.99913 * 179.97438 * 11 10 9 13 13 H 1.08000 * 120.00412 * 359.97438 * 12 11 10 14 14 C 1.38795 * 119.99955 * 180.02562 * 12 11 10 15 15 N 1.31637 * 120.00053 * 359.97438 * 14 12 11 16 16 Si 1.86808 * 120.00178 * 180.02562 * 14 12 11 17 17 H 1.48505 * 109.46699 * 359.97438 * 16 14 12 18 18 H 1.48491 * 109.47088 * 119.99607 * 16 14 12 19 19 H 1.48495 * 109.46835 * 240.00083 * 16 14 12 20 20 C 1.50700 * 109.47158 * 59.99528 * 5 3 2 21 21 C 1.38266 * 119.94622 * 260.00182 * 20 5 3 22 22 C 1.38145 * 120.05239 * 180.02562 * 21 20 5 23 23 C 1.38725 * 119.94620 * 359.97438 * 22 21 20 24 24 O 1.35898 * 120.05592 * 179.97438 * 23 22 21 25 25 C 1.42902 * 117.00254 * 179.97438 * 24 23 22 26 26 C 1.38731 * 119.88981 * 359.97438 * 23 22 21 27 27 C 1.38143 * 119.94414 * 0.02562 * 26 23 22 28 28 H 1.08999 * 109.47293 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47310 * 300.00154 * 1 2 3 30 30 H 1.08996 * 109.46893 * 59.99741 * 1 2 3 31 31 H 1.00898 * 110.99858 * 208.95473 * 7 5 3 32 32 H 1.08997 * 109.47378 * 300.00208 * 8 7 5 33 33 H 1.09000 * 109.47090 * 59.99818 * 8 7 5 34 34 H 1.09004 * 109.47072 * 299.99786 * 9 8 7 35 35 H 1.09000 * 109.47109 * 60.00005 * 9 8 7 36 36 H 1.09004 * 109.46756 * 299.99665 * 10 9 8 37 37 H 1.08992 * 109.46941 * 60.00276 * 10 9 8 38 38 H 0.96998 * 119.99779 * 180.02562 * 15 14 12 39 39 H 1.08002 * 119.97130 * 0.27980 * 21 20 5 40 40 H 1.08000 * 120.02375 * 180.02562 * 22 21 20 41 41 H 1.09001 * 109.47097 * 299.99927 * 25 24 23 42 42 H 1.09005 * 109.47182 * 59.99870 * 25 24 23 43 43 H 1.09001 * 109.47459 * 179.97438 * 25 24 23 44 44 H 1.08001 * 120.02847 * 179.97438 * 26 23 22 45 45 H 1.08001 * 119.97009 * 180.02562 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 -0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9564 0.7805 0.8892 7 7 3.9829 2.6835 -0.0011 8 6 4.0180 3.2226 1.3650 9 6 4.4557 4.6880 1.3239 10 6 4.4929 5.2493 2.7468 11 16 5.0099 6.9832 2.6981 12 6 4.9661 7.3640 4.4178 13 1 4.6768 6.6067 5.1314 14 6 5.3022 8.6376 4.8554 15 7 5.6543 9.5608 3.9856 16 14 5.2564 9.0411 6.6788 17 1 4.8323 7.8394 7.4412 18 1 6.6085 9.4606 7.1270 19 1 4.2914 10.1442 6.9175 20 6 4.1047 0.5918 -1.2313 21 6 4.5990 -0.6966 -1.1453 22 6 5.0935 -1.3246 -2.2720 23 6 5.0934 -0.6617 -3.4906 24 8 5.5798 -1.2772 -4.6003 25 6 5.5476 -0.5346 -5.8208 26 6 4.5959 0.6306 -3.5745 27 6 4.1025 1.2543 -2.4449 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 4.8756 2.7964 -0.4575 32 1 3.0252 3.1519 1.8092 33 1 4.7256 2.6491 1.9638 34 1 5.4487 4.7584 0.8799 35 1 3.7484 5.2618 0.7250 36 1 3.5000 5.1790 3.1911 37 1 5.2003 4.6755 3.3453 38 1 5.8895 10.4507 4.2915 39 1 4.5947 -1.2139 -0.1972 40 1 5.4791 -2.3312 -2.2043 41 1 4.5170 -0.2722 -6.0594 42 1 6.1374 0.3752 -5.7082 43 1 5.9645 -1.1401 -6.6256 44 1 4.5951 1.1490 -4.5220 45 1 3.7148 2.2602 -2.5099 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080737605.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:44 Heat of formation + Delta-G solvation = -100.304633 kcal Electronic energy + Delta-G solvation = -26037.266250 eV Core-core repulsion = 22146.467049 eV Total energy + Delta-G solvation = -3890.799201 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.93503 -40.22687 -38.29033 -36.88830 -35.95052 -33.26294 -32.39795 -31.43319 -30.46593 -28.56681 -27.73800 -26.31269 -25.55265 -24.27616 -22.95187 -22.26601 -21.08283 -20.54405 -18.56693 -17.89583 -17.43819 -16.98721 -16.76593 -16.37058 -16.10969 -15.75855 -15.31774 -14.93891 -14.78758 -14.76178 -14.20780 -13.97136 -13.88411 -13.76963 -13.36008 -13.21423 -13.01839 -12.89079 -12.44964 -12.32746 -12.15590 -11.86107 -11.62337 -11.40842 -11.33860 -11.16209 -11.06414 -10.90713 -10.77326 -10.61906 -10.53000 -10.38246 -9.51377 -9.33457 -9.03965 -8.65871 -8.50336 -8.26126 -6.49025 -6.20156 -3.89799 0.94797 1.03139 2.15314 2.47077 2.87823 3.22735 3.23847 3.31607 3.36678 3.58978 4.06224 4.25393 4.30136 4.45665 4.52933 4.70800 4.71465 4.75321 4.86682 4.92199 5.00181 5.02177 5.07643 5.15052 5.15775 5.29074 5.31528 5.33048 5.38471 5.51135 5.70636 5.73296 5.82749 5.92731 6.01386 6.08945 6.20102 6.23588 6.35427 6.36866 6.63665 6.67915 6.87698 6.99690 7.18164 7.63629 7.73020 8.39727 9.26234 10.88086 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014940 B = 0.002028 C = 0.001864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.657462 B =13800.249536 C =15021.071231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.361 6.361 3 C 0.463 3.537 4 O -0.476 6.476 5 C 0.149 3.851 6 H 0.089 0.911 7 N -0.667 5.667 8 C 0.063 3.937 9 C -0.093 4.093 10 C -0.112 4.112 11 S -0.132 6.132 12 C -0.515 4.515 13 H 0.072 0.928 14 C 0.070 3.930 15 N -0.870 5.870 16 Si 0.918 3.082 17 H -0.272 1.272 18 H -0.280 1.280 19 H -0.280 1.280 20 C -0.135 4.135 21 C -0.055 4.055 22 C -0.154 4.154 23 C 0.134 3.866 24 O -0.318 6.318 25 C 0.026 3.974 26 C -0.209 4.209 27 C -0.052 4.052 28 H 0.099 0.901 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.357 0.643 32 H 0.074 0.926 33 H 0.033 0.967 34 H 0.064 0.936 35 H 0.077 0.923 36 H 0.060 0.940 37 H 0.058 0.942 38 H 0.266 0.734 39 H 0.133 0.867 40 H 0.133 0.867 41 H 0.056 0.944 42 H 0.057 0.943 43 H 0.100 0.900 44 H 0.131 0.869 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.666 -25.654 -16.658 30.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.278 6.278 3 C 0.302 3.698 4 O -0.360 6.360 5 C 0.037 3.963 6 H 0.107 0.893 7 N -0.301 5.301 8 C -0.067 4.067 9 C -0.132 4.132 10 C -0.261 4.261 11 S 0.096 5.904 12 C -0.663 4.663 13 H 0.091 0.909 14 C -0.139 4.139 15 N -0.505 5.505 16 Si 0.745 3.255 17 H -0.196 1.196 18 H -0.206 1.206 19 H -0.206 1.206 20 C -0.136 4.136 21 C -0.073 4.073 22 C -0.172 4.172 23 C 0.088 3.912 24 O -0.232 6.232 25 C -0.069 4.069 26 C -0.228 4.228 27 C -0.071 4.071 28 H 0.117 0.883 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.179 0.821 32 H 0.093 0.907 33 H 0.051 0.949 34 H 0.083 0.917 35 H 0.095 0.905 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.151 0.849 40 H 0.151 0.849 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.118 0.882 44 H 0.148 0.852 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -4.119 -24.430 -17.716 30.457 hybrid contribution 0.101 -0.542 2.387 2.450 sum -4.017 -24.972 -15.329 29.575 Atomic orbital electron populations 1.23228 0.76504 1.03433 1.02570 1.86487 1.23188 1.33633 1.84502 1.23620 0.91560 0.81454 0.73147 1.90700 1.66263 1.36114 1.42930 1.19700 0.88124 0.91058 0.97411 0.89311 1.59988 1.36442 1.13373 1.20322 1.22161 1.01190 0.96113 0.87219 1.21208 1.01972 0.93304 0.96702 1.23213 1.02874 1.02106 0.97924 1.84630 1.88337 1.04155 1.13234 1.22737 1.52706 0.99793 0.91074 0.90935 1.25023 0.94691 0.95298 0.98883 1.70038 1.43078 1.03589 1.33839 0.86112 0.77885 0.78445 0.83075 1.19630 1.20595 1.20583 1.19357 1.04742 0.95531 0.93968 1.20831 0.94982 0.93294 0.98242 1.20367 1.05660 1.01232 0.89972 1.19125 0.93557 0.91423 0.87061 1.86068 1.78180 1.42886 1.16019 1.23090 1.01986 0.97473 0.84350 1.21259 1.06229 0.95100 1.00193 1.20952 0.95258 1.00032 0.90838 0.88267 0.91919 0.92007 0.82149 0.90728 0.94869 0.91701 0.90460 0.92086 0.92313 0.92395 0.84886 0.84911 0.92519 0.92388 0.88171 0.85153 0.84409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.56 101.05 1.07 1.37 16 2 O -0.36 -3.95 10.48 -39.26 -0.41 -4.36 16 3 C 0.46 5.86 7.11 36.01 0.26 6.12 16 4 O -0.48 -7.61 15.67 -18.75 -0.29 -7.90 16 5 C 0.15 1.58 2.73 -70.02 -0.19 1.39 16 6 H 0.09 0.81 7.66 -51.93 -0.40 0.42 16 7 N -0.67 -8.03 5.22 -109.19 -0.57 -8.60 16 8 C 0.06 0.87 5.38 -3.82 -0.02 0.85 16 9 C -0.09 -1.56 5.48 -26.73 -0.15 -1.70 16 10 C -0.11 -2.31 5.67 37.16 0.21 -2.10 16 11 S -0.13 -3.52 21.44 -107.50 -2.30 -5.82 16 12 C -0.51 -15.02 9.50 30.94 0.29 -14.72 16 13 H 0.07 2.06 7.80 -52.49 -0.41 1.65 16 14 C 0.07 2.02 5.49 -17.43 -0.10 1.92 16 15 N -0.87 -26.33 13.22 55.49 0.73 -25.60 16 16 Si 0.92 21.84 29.55 -169.99 -5.02 16.81 16 17 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 C -0.14 -1.29 4.64 -104.60 -0.49 -1.77 16 21 C -0.05 -0.46 9.66 -39.61 -0.38 -0.84 16 22 C -0.15 -1.31 9.99 -39.44 -0.39 -1.70 16 23 C 0.13 1.22 6.69 -39.22 -0.26 0.95 16 24 O -0.32 -2.74 10.50 -19.42 -0.20 -2.94 16 25 C 0.03 0.13 9.81 101.05 0.99 1.12 16 26 C -0.21 -1.82 9.04 -39.43 -0.36 -2.17 16 27 C -0.05 -0.50 8.99 -39.61 -0.36 -0.86 16 28 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 30 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 31 H 0.36 3.80 7.99 -39.29 -0.31 3.49 16 32 H 0.07 1.13 7.62 -51.93 -0.40 0.73 16 33 H 0.03 0.41 8.06 -51.93 -0.42 0.00 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 36 H 0.06 1.27 8.14 -51.91 -0.42 0.85 16 37 H 0.06 1.18 8.14 -51.92 -0.42 0.76 16 38 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 39 H 0.13 0.84 8.04 -52.49 -0.42 0.42 16 40 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 41 H 0.06 0.25 7.66 -51.93 -0.40 -0.15 16 42 H 0.06 0.26 7.66 -51.93 -0.40 -0.14 16 43 H 0.10 0.32 8.14 -51.93 -0.42 -0.11 16 44 H 0.13 0.89 6.30 -52.49 -0.33 0.56 16 45 H 0.14 1.37 7.71 -52.49 -0.40 0.97 16 LS Contribution 396.13 15.07 5.97 5.97 Total: -1.00 -34.93 396.13 -8.80 -43.74 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -6.83 Total: 0.85 kcal Atomic # 6 Polarization: -12.27 SS G_CDS: 0.13 Total: -12.15 kcal Atomic # 7 Polarization: -34.36 SS G_CDS: 0.16 Total: -34.19 kcal Atomic # 8 Polarization: -14.29 SS G_CDS: -0.91 Total: -15.20 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 16 Polarization: -3.52 SS G_CDS: -2.30 Total: -5.82 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.93 -8.80 -43.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080737605.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.568 kcal (2) G-P(sol) polarization free energy of solvation -34.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds