Wall clock time and date at job start Sat Apr 11 2020 05:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34233 * 117.00210 * 2 1 4 4 O 1.20829 * 119.99778 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99991 * 180.02562 * 3 2 1 6 6 H 1.09000 * 109.46791 * 299.99689 * 5 3 2 7 7 N 1.46896 * 109.46917 * 179.97438 * 5 3 2 8 8 C 1.46904 * 111.00031 * 84.99832 * 7 5 3 9 9 C 1.52997 * 109.47189 * 179.97438 * 8 7 5 10 10 C 1.53005 * 109.47040 * 180.02562 * 9 8 7 11 11 S 1.81003 * 109.46962 * 180.02562 * 10 9 8 12 12 C 1.76194 * 99.99913 * 179.97438 * 11 10 9 13 13 H 1.08000 * 120.00412 * 359.97438 * 12 11 10 14 14 C 1.38795 * 119.99955 * 180.02562 * 12 11 10 15 15 N 1.31637 * 120.00053 * 359.97438 * 14 12 11 16 16 Si 1.86808 * 120.00178 * 180.02562 * 14 12 11 17 17 H 1.48505 * 109.46699 * 359.97438 * 16 14 12 18 18 H 1.48491 * 109.47088 * 119.99607 * 16 14 12 19 19 H 1.48495 * 109.46835 * 240.00083 * 16 14 12 20 20 C 1.50700 * 109.47158 * 59.99528 * 5 3 2 21 21 C 1.38266 * 119.94622 * 260.00182 * 20 5 3 22 22 C 1.38145 * 120.05239 * 180.02562 * 21 20 5 23 23 C 1.38725 * 119.94620 * 359.97438 * 22 21 20 24 24 O 1.35898 * 120.05592 * 179.97438 * 23 22 21 25 25 C 1.42902 * 117.00254 * 179.97438 * 24 23 22 26 26 C 1.38731 * 119.88981 * 359.97438 * 23 22 21 27 27 C 1.38143 * 119.94414 * 0.02562 * 26 23 22 28 28 H 1.08999 * 109.47293 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47310 * 300.00154 * 1 2 3 30 30 H 1.08996 * 109.46893 * 59.99741 * 1 2 3 31 31 H 1.00898 * 110.99858 * 208.95473 * 7 5 3 32 32 H 1.08997 * 109.47378 * 300.00208 * 8 7 5 33 33 H 1.09000 * 109.47090 * 59.99818 * 8 7 5 34 34 H 1.09004 * 109.47072 * 299.99786 * 9 8 7 35 35 H 1.09000 * 109.47109 * 60.00005 * 9 8 7 36 36 H 1.09004 * 109.46756 * 299.99665 * 10 9 8 37 37 H 1.08992 * 109.46941 * 60.00276 * 10 9 8 38 38 H 0.96998 * 119.99779 * 180.02562 * 15 14 12 39 39 H 1.08002 * 119.97130 * 0.27980 * 21 20 5 40 40 H 1.08000 * 120.02375 * 180.02562 * 22 21 20 41 41 H 1.09001 * 109.47097 * 299.99927 * 25 24 23 42 42 H 1.09005 * 109.47182 * 59.99870 * 25 24 23 43 43 H 1.09001 * 109.47459 * 179.97438 * 25 24 23 44 44 H 1.08001 * 120.02847 * 179.97438 * 26 23 22 45 45 H 1.08001 * 119.97009 * 180.02562 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 -0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9564 0.7805 0.8892 7 7 3.9829 2.6835 -0.0011 8 6 4.0180 3.2226 1.3650 9 6 4.4557 4.6880 1.3239 10 6 4.4929 5.2493 2.7468 11 16 5.0099 6.9832 2.6981 12 6 4.9661 7.3640 4.4178 13 1 4.6768 6.6067 5.1314 14 6 5.3022 8.6376 4.8554 15 7 5.6543 9.5608 3.9856 16 14 5.2564 9.0411 6.6788 17 1 4.8323 7.8394 7.4412 18 1 6.6085 9.4606 7.1270 19 1 4.2914 10.1442 6.9175 20 6 4.1047 0.5918 -1.2313 21 6 4.5990 -0.6966 -1.1453 22 6 5.0935 -1.3246 -2.2720 23 6 5.0934 -0.6617 -3.4906 24 8 5.5798 -1.2772 -4.6003 25 6 5.5476 -0.5346 -5.8208 26 6 4.5959 0.6306 -3.5745 27 6 4.1025 1.2543 -2.4449 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 4.8756 2.7964 -0.4575 32 1 3.0252 3.1519 1.8092 33 1 4.7256 2.6491 1.9638 34 1 5.4487 4.7584 0.8799 35 1 3.7484 5.2618 0.7250 36 1 3.5000 5.1790 3.1911 37 1 5.2003 4.6755 3.3453 38 1 5.8895 10.4507 4.2915 39 1 4.5947 -1.2139 -0.1972 40 1 5.4791 -2.3312 -2.2043 41 1 4.5170 -0.2722 -6.0594 42 1 6.1374 0.3752 -5.7082 43 1 5.9645 -1.1401 -6.6256 44 1 4.5951 1.1490 -4.5220 45 1 3.7148 2.2602 -2.5099 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080737605.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:43 Heat of formation + Delta-G solvation = -122.031694 kcal Electronic energy + Delta-G solvation = -26038.208406 eV Core-core repulsion = 22146.467049 eV Total energy + Delta-G solvation = -3891.741357 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.77473 -40.93575 -39.01535 -37.77735 -36.99205 -34.63377 -34.38193 -32.07258 -31.41546 -29.29489 -28.33241 -27.84962 -27.04367 -25.45107 -23.65105 -23.07677 -22.32101 -21.42330 -19.56045 -19.19453 -18.75555 -17.80708 -17.66515 -17.07932 -16.90226 -16.76705 -16.63637 -16.37108 -16.26208 -15.60888 -15.38532 -14.94012 -14.84997 -14.57659 -14.52195 -14.15379 -14.13076 -13.72482 -13.52515 -13.45471 -13.11817 -12.98511 -12.92131 -12.82983 -12.59479 -12.50238 -12.29957 -12.06192 -11.85572 -11.77029 -11.73549 -11.50172 -11.36289 -11.15688 -10.32078 -9.97803 -9.59508 -9.16856 -8.66624 -8.37708 -6.13828 0.27162 0.37825 1.20609 1.31006 1.38082 1.49016 1.63820 1.76241 2.27832 2.36622 2.68474 2.96324 3.10148 3.34106 3.53958 3.82078 3.87503 3.91776 4.00145 4.09922 4.24633 4.29334 4.30862 4.31719 4.34041 4.39876 4.43018 4.48424 4.55839 4.69100 4.70102 4.74818 4.75582 4.78334 5.07356 5.17649 5.19439 5.27185 5.35091 5.36734 5.39704 5.50328 5.73572 5.80631 6.18124 6.28888 6.41260 6.80072 7.04436 8.71984 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014940 B = 0.002028 C = 0.001864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.657462 B =13800.249536 C =15021.071231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.360 6.360 3 C 0.463 3.537 4 O -0.518 6.518 5 C 0.153 3.847 6 H 0.111 0.889 7 N -0.675 5.675 8 C 0.077 3.923 9 C -0.081 4.081 10 C -0.087 4.087 11 S -0.197 6.197 12 C -0.537 4.537 13 H 0.072 0.928 14 C 0.013 3.987 15 N -0.907 5.907 16 Si 0.996 3.004 17 H -0.263 1.263 18 H -0.270 1.270 19 H -0.272 1.272 20 C -0.142 4.142 21 C -0.051 4.051 22 C -0.160 4.160 23 C 0.125 3.875 24 O -0.332 6.332 25 C 0.018 3.982 26 C -0.213 4.213 27 C -0.063 4.063 28 H 0.133 0.867 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.365 0.635 32 H 0.060 0.940 33 H 0.054 0.946 34 H 0.072 0.928 35 H 0.060 0.940 36 H 0.056 0.944 37 H 0.067 0.933 38 H 0.271 0.729 39 H 0.156 0.844 40 H 0.147 0.853 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.119 0.881 44 H 0.144 0.856 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.332 -27.819 -16.121 32.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.276 6.276 3 C 0.304 3.696 4 O -0.405 6.405 5 C 0.042 3.958 6 H 0.129 0.871 7 N -0.311 5.311 8 C -0.053 4.053 9 C -0.120 4.120 10 C -0.237 4.237 11 S 0.031 5.969 12 C -0.685 4.685 13 H 0.091 0.909 14 C -0.192 4.192 15 N -0.544 5.544 16 Si 0.818 3.182 17 H -0.187 1.187 18 H -0.195 1.195 19 H -0.198 1.198 20 C -0.143 4.143 21 C -0.069 4.069 22 C -0.178 4.178 23 C 0.080 3.920 24 O -0.246 6.246 25 C -0.077 4.077 26 C -0.232 4.232 27 C -0.082 4.082 28 H 0.151 0.849 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.188 0.812 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.173 0.827 40 H 0.165 0.835 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.138 0.862 44 H 0.162 0.838 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -3.779 -26.624 -17.203 31.922 hybrid contribution -0.043 0.023 2.083 2.083 sum -3.821 -26.601 -15.120 30.836 Atomic orbital electron populations 1.23493 0.75192 1.05558 1.02132 1.86483 1.24518 1.32653 1.83905 1.24088 0.92375 0.81273 0.71826 1.90684 1.67298 1.37454 1.45109 1.19738 0.86894 0.90263 0.98941 0.87133 1.59819 1.37172 1.14829 1.19260 1.21890 1.00738 0.94127 0.88565 1.21074 1.02111 0.95058 0.93780 1.23136 1.02358 0.97552 1.00626 1.84644 1.88987 1.09953 1.13286 1.23075 1.53199 1.00439 0.91806 0.90933 1.26101 0.93837 0.94945 1.04298 1.70168 1.43730 1.04144 1.36353 0.84944 0.78375 0.78467 0.76436 1.18656 1.19502 1.19760 1.19299 1.05555 0.96141 0.93301 1.21046 0.94001 0.92675 0.99188 1.20633 1.05431 1.01923 0.89847 1.19332 0.93494 0.91558 0.87638 1.86053 1.78077 1.43731 1.16748 1.23340 1.02740 0.98002 0.83588 1.21393 1.05989 0.95244 1.00529 1.20950 0.95894 0.99851 0.91467 0.84855 0.92370 0.92521 0.81177 0.92125 0.92798 0.90929 0.92134 0.92513 0.91391 0.91966 0.82680 0.83482 0.91896 0.91862 0.86237 0.83846 0.85414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.56 113.37 1.20 1.66 16 2 O -0.36 -7.38 10.48 -51.44 -0.54 -7.92 16 3 C 0.46 11.40 7.11 71.24 0.51 11.91 16 4 O -0.52 -16.72 15.67 21.95 0.34 -16.38 16 5 C 0.15 3.03 2.73 43.42 0.12 3.15 16 6 H 0.11 1.73 7.66 -2.39 -0.02 1.71 16 7 N -0.68 -15.63 5.22 -499.36 -2.61 -18.23 16 8 C 0.08 2.03 5.38 86.30 0.46 2.49 16 9 C -0.08 -2.69 5.48 30.60 0.17 -2.52 16 10 C -0.09 -3.60 5.67 71.98 0.41 -3.19 16 11 S -0.20 -10.77 21.44 -56.49 -1.21 -11.98 16 12 C -0.54 -31.68 9.50 67.95 0.65 -31.03 16 13 H 0.07 4.12 7.80 -2.91 -0.02 4.10 16 14 C 0.01 0.75 5.49 84.86 0.47 1.22 16 15 N -0.91 -55.64 13.22 21.65 0.29 -55.35 16 16 Si 1.00 44.63 29.55 68.60 2.03 46.66 16 17 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 18 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 19 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 20 C -0.14 -2.50 4.64 -19.85 -0.09 -2.59 16 21 C -0.05 -0.73 9.66 22.25 0.22 -0.51 16 22 C -0.16 -2.40 9.99 22.36 0.22 -2.18 16 23 C 0.13 2.10 6.69 22.50 0.15 2.25 16 24 O -0.33 -5.24 10.50 -92.40 -0.97 -6.21 16 25 C 0.02 0.15 9.81 113.37 1.11 1.27 16 26 C -0.21 -3.50 9.04 22.37 0.20 -3.30 16 27 C -0.06 -1.17 8.99 22.25 0.20 -0.97 16 28 H 0.13 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.06 0.97 8.13 -2.38 -0.02 0.95 16 30 H 0.06 0.95 8.13 -2.39 -0.02 0.93 16 31 H 0.37 7.38 7.99 -89.70 -0.72 6.66 16 32 H 0.06 1.79 7.62 -2.39 -0.02 1.77 16 33 H 0.05 1.21 8.06 -2.39 -0.02 1.19 16 34 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 35 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 37 H 0.07 2.68 8.14 -2.40 -0.02 2.66 16 38 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 39 H 0.16 1.46 8.04 -2.91 -0.02 1.44 16 40 H 0.15 1.72 8.06 -2.91 -0.02 1.69 16 41 H 0.06 0.46 7.66 -2.39 -0.02 0.45 16 42 H 0.06 0.48 7.66 -2.38 -0.02 0.46 16 43 H 0.12 0.54 8.14 -2.39 -0.02 0.52 16 44 H 0.14 1.83 6.30 -2.91 -0.02 1.81 16 45 H 0.13 2.58 7.71 -2.91 -0.02 2.55 16 Total: -1.00 -76.44 396.13 3.59 -72.85 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: 0.28 Total: 18.92 kcal Atomic # 6 Polarization: -28.34 SS G_CDS: 5.99 Total: -22.36 kcal Atomic # 7 Polarization: -71.26 SS G_CDS: -2.32 Total: -73.59 kcal Atomic # 8 Polarization: -29.34 SS G_CDS: -1.17 Total: -30.51 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Atomic # 16 Polarization: -10.77 SS G_CDS: -1.21 Total: -11.98 kcal Total: -76.44 3.59 -72.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080737605.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.178 kcal (2) G-P(sol) polarization free energy of solvation -76.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds