Wall clock time and date at job start Sat Apr 11 2020 05:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46496 * 109.47169 * 2 1 4 4 C 1.46504 * 119.99721 * 268.99239 * 3 2 1 5 5 C 1.50705 * 109.47273 * 273.59315 * 4 3 2 6 6 H 1.08002 * 119.99844 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00143 * 180.02562 * 5 4 3 8 8 N 1.31514 * 120.00332 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 119.99896 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.47250 * 89.99951 * 9 7 5 11 11 H 1.48504 * 109.47268 * 210.00018 * 9 7 5 12 12 H 1.48500 * 109.47444 * 330.00278 * 9 7 5 13 13 C 1.34772 * 120.00287 * 88.99624 * 3 2 1 14 14 O 1.21283 * 120.00037 * 5.03656 * 13 3 2 15 15 C 1.50703 * 120.00120 * 185.04302 * 13 3 2 16 16 H 1.08999 * 109.46955 * 33.49680 * 15 13 3 17 17 C 1.52995 * 109.47058 * 273.49402 * 15 13 3 18 18 C 1.50703 * 109.47195 * 153.49211 * 15 13 3 19 19 C 1.38236 * 120.00092 * 240.00297 * 18 15 13 20 20 C 1.38238 * 119.99861 * 180.02562 * 19 18 15 21 21 C 1.38232 * 120.00098 * 359.97438 * 20 19 18 22 22 S 1.76198 * 120.00101 * 179.97438 * 21 20 19 23 23 C 1.81404 * 104.44505 * 90.00660 * 22 21 20 24 24 O 1.42101 * 104.27577 * 333.93911 * 22 21 20 25 25 O 1.42100 * 104.27885 * 206.07746 * 22 21 20 26 26 C 1.38239 * 119.99838 * 0.26377 * 21 20 19 27 27 C 1.38230 * 119.99837 * 359.46765 * 26 21 20 28 28 H 1.09000 * 109.47276 * 63.99826 * 1 2 3 29 29 H 1.09002 * 109.47221 * 183.99398 * 1 2 3 30 30 H 1.09000 * 109.47705 * 303.99529 * 1 2 3 31 31 H 1.08996 * 109.47568 * 239.99670 * 2 1 3 32 32 H 1.09007 * 109.47226 * 119.99667 * 2 1 3 33 33 H 1.08994 * 109.47079 * 33.59291 * 4 3 2 34 34 H 1.09001 * 109.46923 * 153.59442 * 4 3 2 35 35 H 0.96997 * 120.00488 * 180.02562 * 8 7 5 36 36 H 1.08999 * 109.46844 * 305.31788 * 17 15 13 37 37 H 1.08999 * 109.47157 * 65.31760 * 17 15 13 38 38 H 1.09003 * 109.47308 * 185.32150 * 17 15 13 39 39 H 1.08004 * 120.00069 * 359.97103 * 19 18 15 40 40 H 1.07994 * 119.99511 * 179.97438 * 20 19 18 41 41 H 1.08997 * 109.47235 * 299.99674 * 23 22 21 42 42 H 1.08997 * 109.47077 * 180.02562 * 23 22 21 43 43 H 1.08999 * 109.47180 * 60.00105 * 23 22 21 44 44 H 1.07999 * 119.99734 * 179.71859 * 26 21 20 45 45 H 1.08000 * 119.99889 * 180.27398 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2835 2.0643 -1.2686 5 6 3.6862 1.7530 -1.7232 6 1 4.3172 1.1108 -1.1266 7 6 4.1643 2.2887 -2.9002 8 7 5.3882 2.0166 -3.2972 9 14 3.0732 3.3999 -3.9317 10 1 3.2581 4.8101 -3.5046 11 1 3.4414 3.2642 -5.3639 12 1 1.6526 3.0090 -3.7467 13 6 2.2236 2.0234 1.1669 14 8 2.0923 1.4304 2.2167 15 6 2.6163 3.4783 1.1674 16 1 2.1418 3.9830 0.3259 17 6 4.1365 3.5963 1.0415 18 6 2.1677 4.1194 2.4554 19 6 1.2831 5.1813 2.4275 20 6 0.8719 5.7696 3.6089 21 6 1.3449 5.2957 4.8183 22 16 0.8214 6.0460 6.3241 23 6 -0.6629 5.1180 6.7999 24 8 0.4812 7.3750 5.9536 25 8 1.8834 5.7875 7.2322 26 6 2.2334 4.2369 4.8459 27 6 2.6402 3.6451 3.6648 28 1 -0.3634 0.4505 -0.9236 29 1 -0.3634 -1.0252 0.0716 30 1 -0.3634 0.5746 0.8520 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.5732 1.7218 -2.0211 34 1 2.1765 3.1403 -1.1311 35 1 5.7248 2.3938 -4.1250 36 1 4.6127 3.0127 1.8295 37 1 4.4510 3.2181 0.0688 38 1 4.4290 4.6420 1.1367 39 1 0.9138 5.5518 1.4826 40 1 0.1812 6.5994 3.5870 41 1 -1.4153 5.2096 6.0166 42 1 -1.0592 5.5198 7.7324 43 1 -0.4065 4.0675 6.9364 44 1 2.6064 3.8696 5.7905 45 1 3.3308 2.8151 3.6866 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084633721.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:09 Heat of formation + Delta-G solvation = -79.883213 kcal Electronic energy + Delta-G solvation = -27735.976319 eV Core-core repulsion = 23846.062657 eV Total energy + Delta-G solvation = -3889.913662 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 4.89 seconds Orbital eigenvalues (eV) -40.17714 -38.68466 -37.25426 -36.10013 -35.46364 -34.14946 -32.74819 -31.03185 -30.87356 -29.86338 -29.23648 -27.75575 -24.77825 -23.28732 -22.82854 -22.72261 -21.17512 -19.16777 -18.35544 -17.81236 -17.13767 -16.78914 -16.37892 -16.08683 -15.97275 -15.08428 -14.79843 -14.62419 -14.45863 -14.15208 -13.70924 -13.61227 -13.47887 -13.41954 -13.17371 -12.99549 -12.77841 -12.58476 -12.24637 -12.21547 -12.13574 -12.00440 -11.79861 -11.71679 -11.47947 -11.35281 -11.16290 -11.01930 -10.91582 -10.77122 -10.60411 -10.48045 -10.33197 -9.71034 -9.31581 -8.99009 -8.91051 -8.78802 -7.88050 -6.31132 -4.32924 -0.11492 0.82746 1.37736 2.71111 3.09554 3.15888 3.17397 3.20003 3.37289 3.70454 3.87966 3.93689 4.17511 4.48339 4.60540 4.74607 4.82145 4.89536 4.98447 5.10106 5.32637 5.33963 5.38767 5.50218 5.53312 5.59270 5.66577 5.72135 5.79387 5.97580 6.07439 6.12342 6.13721 6.21405 6.25762 6.29488 6.39006 6.46014 6.58022 6.64315 6.85839 6.91615 7.21783 7.34005 7.99658 8.30507 8.70546 8.78808 9.27490 10.80982 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017036 B = 0.002983 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.137536 B = 9385.382452 C =10002.427066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.114 3.886 3 N -0.587 5.587 4 C 0.205 3.795 5 C -0.541 4.541 6 H 0.080 0.920 7 C 0.078 3.922 8 N -0.887 5.887 9 Si 0.868 3.132 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.264 1.264 13 C 0.527 3.473 14 O -0.563 6.563 15 C -0.078 4.078 16 H 0.103 0.897 17 C -0.146 4.146 18 C -0.007 4.007 19 C -0.137 4.137 20 C -0.030 4.030 21 C -0.666 4.666 22 S 2.504 3.496 23 C -0.651 4.651 24 O -0.942 6.942 25 O -0.941 6.941 26 C -0.030 4.030 27 C -0.098 4.098 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.052 0.948 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.033 0.967 34 H 0.032 0.968 35 H 0.268 0.732 36 H 0.055 0.945 37 H 0.106 0.894 38 H 0.059 0.941 39 H 0.131 0.869 40 H 0.138 0.862 41 H 0.131 0.869 42 H 0.129 0.871 43 H 0.132 0.868 44 H 0.138 0.862 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.115 4.813 13.417 18.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.009 4.009 3 N -0.316 5.316 4 C 0.083 3.917 5 C -0.579 4.579 6 H 0.098 0.902 7 C -0.126 4.126 8 N -0.524 5.524 9 Si 0.694 3.306 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.189 1.189 13 C 0.314 3.686 14 O -0.444 6.444 15 C -0.099 4.099 16 H 0.121 0.879 17 C -0.203 4.203 18 C -0.008 4.008 19 C -0.156 4.156 20 C -0.049 4.049 21 C -0.754 4.754 22 S 2.684 3.316 23 C -0.801 4.801 24 O -0.940 6.940 25 O -0.938 6.938 26 C -0.049 4.049 27 C -0.117 4.117 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.100 0.900 32 H 0.092 0.908 33 H 0.051 0.949 34 H 0.050 0.950 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.124 0.876 38 H 0.078 0.922 39 H 0.149 0.851 40 H 0.156 0.844 41 H 0.150 0.850 42 H 0.147 0.853 43 H 0.151 0.849 44 H 0.156 0.844 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -11.658 5.200 14.194 19.089 hybrid contribution -0.753 -0.130 -1.483 1.668 sum -12.410 5.069 12.711 18.474 Atomic orbital electron populations 1.22121 0.96868 1.01459 1.01710 1.21271 0.93153 0.83384 1.03069 1.47903 1.63204 1.13587 1.06933 1.19904 0.97867 0.92713 0.81177 1.21315 0.96833 1.32056 1.07680 0.90175 1.24867 0.94819 0.95905 0.97006 1.69878 1.15622 1.43906 1.23007 0.86976 0.81492 0.81664 0.80431 1.19712 1.20806 1.18899 1.20096 0.76469 0.88430 0.83575 1.90599 1.53897 1.68458 1.31409 1.20422 1.00143 0.93917 0.95463 0.87875 1.21898 0.90516 1.02078 1.05844 1.20016 0.92773 0.93119 0.94849 1.21195 0.98767 0.97038 0.98591 1.20787 0.96376 0.96737 0.91030 1.30305 1.13876 1.13027 1.18209 1.04945 0.76612 0.75358 0.74655 1.30228 1.21356 1.16134 1.12332 1.93571 1.85007 1.32572 1.82814 1.93577 1.51260 1.85871 1.63117 1.20902 0.92779 0.91815 0.99427 1.21239 1.00147 0.99066 0.91274 0.92757 0.92171 0.92927 0.90048 0.90755 0.94900 0.95035 0.92231 0.92554 0.87567 0.92241 0.85124 0.84408 0.85041 0.85280 0.84932 0.84390 0.84428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.33 10.23 37.15 0.38 -1.95 16 2 C 0.11 1.95 6.17 -4.05 -0.02 1.93 16 3 N -0.59 -11.23 2.46 -175.06 -0.43 -11.66 16 4 C 0.20 4.20 4.00 -5.19 -0.02 4.18 16 5 C -0.54 -13.25 8.03 -34.44 -0.28 -13.53 16 6 H 0.08 2.22 8.06 -52.49 -0.42 1.80 16 7 C 0.08 1.99 5.47 -17.82 -0.10 1.90 16 8 N -0.89 -24.59 13.96 55.43 0.77 -23.82 16 9 Si 0.87 18.77 27.47 -169.99 -4.67 14.10 16 10 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 11 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 12 H -0.26 -5.40 6.54 56.52 0.37 -5.03 16 13 C 0.53 9.96 6.75 -10.99 -0.07 9.89 16 14 O -0.56 -11.43 14.12 5.56 0.08 -11.35 16 15 C -0.08 -1.30 2.16 -92.92 -0.20 -1.50 16 16 H 0.10 1.63 5.86 -51.93 -0.30 1.33 16 17 C -0.15 -2.49 8.87 37.16 0.33 -2.16 16 18 C -0.01 -0.11 4.66 -104.62 -0.49 -0.59 16 19 C -0.14 -1.80 9.67 -39.58 -0.38 -2.18 16 20 C -0.03 -0.36 9.47 -39.58 -0.37 -0.73 16 21 C -0.67 -7.81 5.66 -39.58 -0.22 -8.03 16 22 S 2.50 23.78 5.80 -107.50 -0.62 23.15 16 23 C -0.65 -3.52 10.80 101.05 1.09 -2.43 16 24 O -0.94 -11.59 17.13 -57.54 -0.99 -12.58 16 25 O -0.94 -11.86 17.12 -57.54 -0.98 -12.84 16 26 C -0.03 -0.39 9.47 -39.58 -0.37 -0.77 16 27 C -0.10 -1.47 7.96 -39.59 -0.31 -1.79 16 28 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.08 1.39 8.06 -51.93 -0.42 0.98 16 32 H 0.07 1.30 7.39 -51.93 -0.38 0.92 16 33 H 0.03 0.67 7.16 -51.93 -0.37 0.30 16 34 H 0.03 0.62 5.09 -51.93 -0.26 0.36 16 35 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 36 H 0.06 0.94 7.58 -51.93 -0.39 0.55 16 37 H 0.11 2.12 5.93 -51.93 -0.31 1.82 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.13 1.45 7.95 -52.48 -0.42 1.04 16 40 H 0.14 1.31 7.57 -52.49 -0.40 0.91 16 41 H 0.13 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.13 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.13 0.60 8.14 -51.92 -0.42 0.18 16 44 H 0.14 1.51 7.56 -52.49 -0.40 1.11 16 45 H 0.14 2.14 6.92 -52.49 -0.36 1.78 16 LS Contribution 378.60 15.07 5.71 5.71 Total: -1.00 -33.16 378.60 -8.76 -41.92 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -6.57 Total: 5.15 kcal Atomic # 6 Polarization: -16.72 SS G_CDS: -1.05 Total: -17.78 kcal Atomic # 7 Polarization: -35.82 SS G_CDS: 0.34 Total: -35.48 kcal Atomic # 8 Polarization: -34.89 SS G_CDS: -1.89 Total: -36.78 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -4.67 Total: 14.10 kcal Atomic # 16 Polarization: 23.78 SS G_CDS: -0.62 Total: 23.15 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.16 -8.76 -41.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084633721.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.966 kcal (2) G-P(sol) polarization free energy of solvation -33.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.90 seconds