Wall clock time and date at job start Sat Apr 11 2020 05:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46494 * 119.99969 * 2 1 4 4 C 1.34774 * 120.00005 * 180.02562 * 2 1 3 5 5 O 1.21584 * 120.00156 * 355.01310 * 4 2 1 6 6 C 1.47636 * 119.99979 * 175.01256 * 4 2 1 7 7 C 1.39721 * 120.08872 * 155.46079 * 6 4 2 8 8 C 1.37717 * 119.91491 * 180.02562 * 7 6 4 9 9 C 1.38990 * 120.08535 * 359.97438 * 8 7 6 10 10 O 1.35747 * 119.91081 * 179.97438 * 9 8 7 11 11 C 1.34810 * 116.99770 * 77.57519 * 10 9 8 12 12 O 1.21514 * 120.00490 * 355.15502 * 11 10 9 13 13 C 1.47481 * 119.99657 * 175.15333 * 11 10 9 14 14 C 1.40083 * 119.90420 * 359.72531 * 13 11 10 15 15 C 1.36295 * 120.10376 * 179.71975 * 14 13 11 16 16 C 1.40902 * 119.89641 * 0.57403 * 15 14 13 17 17 C 1.41079 * 120.09669 * 179.67734 * 16 15 14 18 18 H 1.08000 * 119.99918 * 204.09336 * 17 16 15 19 19 C 1.40249 * 119.99913 * 24.09539 * 17 16 15 20 20 N 1.30628 * 120.00162 * 17.65557 * 19 17 16 21 21 Si 1.86805 * 119.99774 * 197.65324 * 19 17 16 22 22 H 1.48496 * 109.46942 * 94.98661 * 21 19 17 23 23 H 1.48501 * 109.46990 * 214.98820 * 21 19 17 24 24 H 1.48499 * 109.46872 * 334.98733 * 21 19 17 25 25 C 1.40914 * 119.80475 * 359.70174 * 16 15 14 26 26 C 1.36294 * 119.89645 * 359.97438 * 25 16 15 27 27 C 1.38987 * 120.17262 * 0.25602 * 9 8 7 28 28 C 1.37715 * 120.09293 * 359.48582 * 27 9 8 29 29 H 1.09000 * 109.46931 * 269.99568 * 1 2 3 30 30 H 1.08996 * 109.47426 * 29.99950 * 1 2 3 31 31 H 1.08997 * 109.46848 * 150.00435 * 1 2 3 32 32 H 1.09004 * 109.47032 * 275.33049 * 3 2 1 33 33 H 1.09007 * 109.47206 * 35.33095 * 3 2 1 34 34 H 1.09000 * 109.47261 * 155.33397 * 3 2 1 35 35 H 1.08006 * 120.04077 * 359.97438 * 7 6 4 36 36 H 1.08000 * 119.96040 * 179.97438 * 8 7 6 37 37 H 1.08007 * 119.94602 * 359.97438 * 14 13 11 38 38 H 1.07995 * 120.04688 * 180.28066 * 15 14 13 39 39 H 0.96999 * 120.00326 * 179.97438 * 20 19 17 40 40 H 1.07996 * 120.04866 * 179.97438 * 25 16 15 41 41 H 1.07996 * 119.94944 * 180.02562 * 26 25 16 42 42 H 1.08007 * 119.95426 * 179.72644 * 27 9 8 43 43 H 1.08002 * 120.05073 * 180.23548 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1672 -0.0005 5 8 1.5345 -2.2182 0.0905 6 6 3.6111 -1.1695 -0.1117 7 6 4.3492 -2.2478 0.3831 8 6 5.7223 -2.2460 0.2780 9 6 6.3740 -1.1737 -0.3198 10 8 7.7277 -1.1754 -0.4211 11 6 8.2678 -1.9395 -1.3915 12 8 7.5559 -2.6539 -2.0694 13 6 9.7228 -1.9084 -1.6305 14 6 10.5409 -1.0798 -0.8517 15 6 11.8867 -1.0522 -1.0652 16 6 12.4534 -1.8496 -2.0792 17 6 13.8452 -1.8191 -2.3084 18 1 14.2392 -2.0922 -3.2762 19 6 14.7170 -1.4342 -1.2795 20 7 14.3060 -1.4378 -0.0396 21 14 16.4661 -0.9165 -1.6822 22 1 16.5284 0.5619 -1.8070 23 1 17.3762 -1.3604 -0.5959 24 1 16.8841 -1.5395 -2.9637 25 6 11.6260 -2.6772 -2.8641 26 6 10.2820 -2.7035 -2.6391 27 6 5.6437 -0.0971 -0.8089 28 6 4.2699 -0.0937 -0.7124 29 1 -0.3633 -0.0001 1.0277 30 1 -0.3634 0.8899 -0.5138 31 1 -0.3633 -0.8900 -0.5138 32 1 2.2965 1.6311 -1.0233 33 1 1.6531 2.0026 0.5943 34 1 3.1880 1.1164 0.4289 35 1 3.8435 -3.0812 0.8481 36 1 6.2936 -3.0789 0.6606 37 1 10.1049 -0.4650 -0.0781 38 1 12.5171 -0.4164 -0.4613 39 1 14.9090 -1.1720 0.6721 40 1 12.0561 -3.2898 -3.6426 41 1 9.6471 -3.3378 -3.2398 42 1 6.1540 0.7363 -1.2688 43 1 3.7028 0.7415 -1.0961 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089421561.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:32 Heat of formation + Delta-G solvation = -46.887932 kcal Electronic energy + Delta-G solvation = -27302.812156 eV Core-core repulsion = 23278.885326 eV Total energy + Delta-G solvation = -4023.926830 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.99138 -40.21383 -38.23024 -37.40041 -36.06765 -35.91415 -34.05709 -31.45584 -31.01841 -30.26470 -29.60305 -28.20097 -26.88123 -26.19361 -23.82607 -22.90310 -22.09616 -21.06378 -20.31163 -20.03494 -17.69708 -17.66106 -17.56251 -16.84587 -16.75889 -16.20588 -15.67905 -15.58800 -14.90572 -14.71223 -14.18840 -14.10443 -13.93002 -13.70346 -13.51397 -13.36453 -13.10106 -12.99013 -12.83798 -12.55764 -12.34084 -12.19413 -12.11657 -11.95510 -11.60696 -11.46329 -11.39352 -11.07330 -10.80692 -10.48961 -10.26209 -10.16278 -9.75692 -9.66212 -9.47134 -9.15965 -9.04203 -8.70031 -7.86106 -7.74772 -7.18955 -4.77646 0.61720 1.22399 1.90365 2.51360 2.67025 2.79429 2.87291 2.90996 2.94718 3.24390 3.47315 3.63252 3.82948 4.23665 4.35665 4.52342 4.75245 4.80355 4.88596 4.95567 5.11542 5.20582 5.28359 5.29477 5.33063 5.41949 5.45288 5.81526 5.86547 6.02581 6.05577 6.13955 6.16736 6.19471 6.31093 6.56979 6.65838 6.71100 6.87827 6.97705 6.98387 7.08697 7.31616 7.55841 7.69370 7.73741 7.87433 7.90657 8.25671 8.46669 8.59173 8.61172 9.71448 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.033103 B = 0.001895 C = 0.001855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.646087 B =14769.199134 C =15090.153720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.620 5.620 3 C 0.063 3.937 4 C 0.563 3.437 5 O -0.536 6.536 6 C -0.151 4.151 7 C -0.043 4.043 8 C -0.132 4.132 9 C 0.135 3.865 10 O -0.303 6.303 11 C 0.514 3.486 12 O -0.533 6.533 13 C -0.276 4.276 14 C -0.043 4.043 15 C -0.184 4.184 16 C 0.130 3.870 17 C -0.428 4.428 18 H 0.089 0.911 19 C 0.071 3.929 20 N -0.760 5.760 21 Si 0.918 3.082 22 H -0.263 1.263 23 H -0.273 1.273 24 H -0.257 1.257 25 C -0.238 4.238 26 C -0.015 4.015 27 C -0.135 4.135 28 C -0.090 4.090 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.092 0.908 35 H 0.138 0.862 36 H 0.136 0.864 37 H 0.102 0.898 38 H 0.124 0.876 39 H 0.290 0.710 40 H 0.103 0.897 41 H 0.103 0.897 42 H 0.138 0.862 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.313 8.105 2.662 17.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.353 5.353 3 C -0.080 4.080 4 C 0.353 3.647 5 O -0.413 6.413 6 C -0.154 4.154 7 C -0.062 4.062 8 C -0.151 4.151 9 C 0.092 3.908 10 O -0.220 6.220 11 C 0.368 3.632 12 O -0.424 6.424 13 C -0.279 4.279 14 C -0.062 4.062 15 C -0.203 4.203 16 C 0.127 3.873 17 C -0.455 4.455 18 H 0.107 0.893 19 C -0.152 4.152 20 N -0.382 5.382 21 Si 0.741 3.259 22 H -0.188 1.188 23 H -0.198 1.198 24 H -0.181 1.181 25 C -0.257 4.257 26 C -0.034 4.034 27 C -0.154 4.154 28 C -0.108 4.108 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.110 0.890 35 H 0.156 0.844 36 H 0.153 0.847 37 H 0.120 0.880 38 H 0.142 0.858 39 H 0.102 0.898 40 H 0.121 0.879 41 H 0.122 0.878 42 H 0.156 0.844 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -15.788 7.362 2.775 17.640 hybrid contribution 0.726 0.257 0.008 0.770 sum -15.062 7.619 2.783 17.107 Atomic orbital electron populations 1.21644 0.78728 1.03181 1.01996 1.47588 1.07185 1.06275 1.74299 1.22468 0.98592 0.85139 1.01795 1.18333 0.87210 0.83230 0.75943 1.90778 1.69891 1.31059 1.49602 1.19790 0.92509 0.97265 1.05838 1.21038 0.92706 0.96557 0.95937 1.21371 0.94596 0.98457 1.00664 1.18899 0.82415 0.94199 0.95261 1.84674 1.18094 1.65867 1.53393 1.21957 0.89852 0.75814 0.75571 1.90757 1.63074 1.40799 1.47770 1.18094 0.86202 1.14344 1.09234 1.20649 0.93992 0.95565 0.95948 1.21038 0.93155 1.03273 1.02875 1.17880 0.93130 0.86929 0.89395 1.19996 0.91277 1.35665 0.98545 0.89301 1.26197 1.02281 0.92432 0.94253 1.69732 1.38244 1.29654 1.00554 0.86123 0.79883 0.80048 0.79884 1.18815 1.19791 1.18067 1.20683 0.92934 1.05688 1.06419 1.20347 0.94712 0.94592 0.93720 1.21185 0.93711 0.99626 1.00853 1.21824 0.94007 0.97673 0.97299 0.92606 0.91081 0.90466 0.91816 0.91093 0.88978 0.84426 0.84657 0.87963 0.85824 0.89843 0.87918 0.87849 0.84411 0.83291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.63 10.42 59.85 0.62 1.26 16 2 N -0.62 -5.78 3.27 -190.72 -0.62 -6.40 16 3 C 0.06 0.37 8.69 59.84 0.52 0.89 16 4 C 0.56 7.29 7.48 -12.43 -0.09 7.20 16 5 O -0.54 -8.68 16.23 5.29 0.09 -8.59 16 6 C -0.15 -1.95 5.50 -104.95 -0.58 -2.53 16 7 C -0.04 -0.60 9.58 -39.22 -0.38 -0.98 16 8 C -0.13 -2.03 9.58 -39.49 -0.38 -2.41 16 9 C 0.13 2.22 5.13 -39.03 -0.20 2.02 16 10 O -0.30 -5.78 9.24 -24.51 -0.23 -6.00 16 11 C 0.51 11.10 7.76 34.50 0.27 11.37 16 12 O -0.53 -12.34 15.87 -19.27 -0.31 -12.65 16 13 C -0.28 -6.27 5.89 -104.75 -0.62 -6.89 16 14 C -0.04 -0.95 9.55 -39.59 -0.38 -1.33 16 15 C -0.18 -4.40 8.64 -39.27 -0.34 -4.74 16 16 C 0.13 3.18 5.58 -106.80 -0.60 2.58 16 17 C -0.43 -10.11 9.05 -37.75 -0.34 -10.45 16 18 H 0.09 1.99 7.91 -52.49 -0.42 1.57 16 19 C 0.07 1.58 5.15 -17.31 -0.09 1.49 16 20 N -0.76 -17.40 10.90 55.56 0.61 -16.80 16 21 Si 0.92 16.36 29.60 -169.99 -5.03 11.33 16 22 H -0.26 -4.65 7.11 56.52 0.40 -4.25 16 23 H -0.27 -4.78 7.11 56.52 0.40 -4.38 16 24 H -0.26 -4.55 7.11 56.52 0.40 -4.15 16 25 C -0.24 -5.49 9.73 -39.27 -0.38 -5.87 16 26 C -0.02 -0.34 9.52 -39.59 -0.38 -0.72 16 27 C -0.14 -1.81 9.97 -39.49 -0.39 -2.20 16 28 C -0.09 -1.01 7.52 -39.22 -0.29 -1.30 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.33 8.07 -51.93 -0.42 -0.09 16 31 H 0.08 0.67 7.49 -51.93 -0.39 0.28 16 32 H 0.06 0.29 7.11 -51.93 -0.37 -0.08 16 33 H 0.07 0.28 8.11 -51.92 -0.42 -0.14 16 34 H 0.09 0.60 5.13 -51.93 -0.27 0.33 16 35 H 0.14 1.78 7.84 -52.48 -0.41 1.36 16 36 H 0.14 2.02 8.06 -52.49 -0.42 1.59 16 37 H 0.10 2.08 7.59 -52.48 -0.40 1.68 16 38 H 0.12 2.98 6.10 -52.49 -0.32 2.66 16 39 H 0.29 5.93 8.29 -40.82 -0.34 5.59 16 40 H 0.10 2.18 8.06 -52.49 -0.42 1.76 16 41 H 0.10 2.23 7.63 -52.49 -0.40 1.83 16 42 H 0.14 1.61 8.06 -52.48 -0.42 1.18 16 43 H 0.15 1.16 4.40 -52.49 -0.23 0.93 16 LS Contribution 369.18 15.07 5.56 5.56 Total: -1.00 -29.72 369.18 -8.82 -38.54 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -4.87 Total: 7.64 kcal Atomic # 6 Polarization: -8.60 SS G_CDS: -4.02 Total: -12.62 kcal Atomic # 7 Polarization: -23.18 SS G_CDS: -0.02 Total: -23.20 kcal Atomic # 8 Polarization: -26.80 SS G_CDS: -0.45 Total: -27.25 kcal Atomic # 14 Polarization: 16.36 SS G_CDS: -5.03 Total: 11.33 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.72 -8.82 -38.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089421561.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.350 kcal (2) G-P(sol) polarization free energy of solvation -29.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds