Wall clock time and date at job start Sat Apr 11 2020 05:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46495 * 109.47013 * 2 1 4 4 C 1.34780 * 119.99882 * 179.97438 * 3 2 1 5 5 O 1.21551 * 119.99926 * 0.02562 * 4 3 2 6 6 C 1.47865 * 119.99944 * 179.97438 * 4 3 2 7 7 C 1.39605 * 120.11687 * 359.97438 * 6 4 3 8 8 C 1.37966 * 119.96878 * 180.02562 * 7 6 4 9 9 C 1.38283 * 120.20805 * 359.73696 * 8 7 6 10 10 C 1.38833 * 120.23481 * 0.52094 * 9 8 7 11 11 O 1.35906 * 119.98689 * 179.76279 * 10 9 8 12 12 C 1.34787 * 116.99969 * 264.98626 * 11 10 9 13 13 O 1.21518 * 119.99624 * 355.12086 * 12 11 10 14 14 C 1.47480 * 120.00046 * 175.12463 * 12 11 10 15 15 C 1.40084 * 119.90288 * 179.97438 * 14 12 11 16 16 C 1.36291 * 120.09904 * 180.29449 * 15 14 12 17 17 C 1.40902 * 119.90010 * 359.48347 * 16 15 14 18 18 C 1.41088 * 120.09664 * 180.24728 * 17 16 15 19 19 H 1.07997 * 119.99956 * 205.54348 * 18 17 16 20 20 C 1.40248 * 119.99815 * 25.54596 * 18 17 16 21 21 N 1.30626 * 120.00144 * 17.99635 * 20 18 17 22 22 Si 1.86797 * 119.99844 * 197.99558 * 20 18 17 23 23 H 1.48502 * 109.47208 * 89.99821 * 22 20 18 24 24 H 1.48501 * 109.47347 * 210.00150 * 22 20 18 25 25 H 1.48503 * 109.47411 * 330.00369 * 22 20 18 26 26 C 1.40902 * 119.80472 * 0.51856 * 17 16 15 27 27 C 1.36292 * 119.89653 * 359.73075 * 26 17 16 28 28 C 1.38509 * 120.02799 * 359.48037 * 10 9 8 29 29 H 1.08995 * 109.47256 * 59.99920 * 1 2 3 30 30 H 1.08997 * 109.47392 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47134 * 300.00176 * 1 2 3 32 32 H 1.09000 * 109.47134 * 239.99824 * 2 1 3 33 33 H 1.08995 * 109.47256 * 120.00080 * 2 1 3 34 34 H 0.96999 * 120.00386 * 359.97438 * 3 2 1 35 35 H 1.08003 * 120.01999 * 0.03901 * 7 6 4 36 36 H 1.08007 * 119.89700 * 180.02562 * 8 7 6 37 37 H 1.07999 * 119.88674 * 180.27946 * 9 8 7 38 38 H 1.08003 * 119.94506 * 0.02562 * 15 14 12 39 39 H 1.08005 * 120.04338 * 179.70843 * 16 15 14 40 40 H 0.97003 * 120.00439 * 179.97438 * 21 20 18 41 41 H 1.08001 * 120.05111 * 179.71261 * 26 17 16 42 42 H 1.08001 * 119.94587 * 179.97438 * 27 26 17 43 43 H 1.07998 * 120.10746 * 180.23402 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3434 1.6275 0.0005 5 8 4.1332 0.7036 0.0005 6 6 3.8363 3.0215 -0.0001 7 6 2.9312 4.0845 -0.0017 8 6 3.3945 5.3841 -0.0027 9 6 4.7537 5.6382 0.0033 10 6 5.6614 4.5876 -0.0005 11 8 6.9962 4.8432 0.0006 12 6 7.6170 4.8596 -1.1956 13 8 7.0039 4.5645 -2.2024 14 6 9.0405 5.2355 -1.2826 15 6 9.6839 5.2513 -2.5269 16 6 11.0007 5.5922 -2.6111 17 6 11.7123 5.9396 -1.4456 18 6 13.0743 6.2983 -1.5287 19 1 13.7207 6.1657 -0.6738 20 6 13.5886 6.8271 -2.7215 21 7 12.7784 7.3144 -3.6229 22 14 15.4324 6.8346 -3.0213 23 1 15.8287 5.5746 -3.6999 24 1 15.7897 7.9927 -3.8795 25 1 16.1446 6.9424 -1.7227 26 6 11.0611 5.9223 -0.1962 27 6 9.7453 5.5752 -0.1207 28 6 5.2071 3.2792 0.0006 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.3880 2.1185 -0.0004 35 1 1.8689 3.8897 -0.0019 36 1 2.6932 6.2055 -0.0036 37 1 5.1106 6.6575 0.0070 38 1 9.1366 4.9886 -3.4201 39 1 11.4971 5.5995 -3.5703 40 1 13.1341 7.6805 -4.4477 41 1 11.6039 6.1834 0.7002 42 1 9.2455 5.5612 0.8366 43 1 5.9120 2.4610 0.0015 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089623113.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:37 Heat of formation + Delta-G solvation = -76.817854 kcal Electronic energy + Delta-G solvation = -27084.665116 eV Core-core repulsion = 23059.440427 eV Total energy + Delta-G solvation = -4025.224689 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.86537 -39.96047 -38.24355 -37.39585 -35.95475 -35.60219 -34.01942 -31.86283 -30.92209 -30.38021 -29.84456 -29.47341 -26.31777 -24.67191 -23.67359 -22.65802 -22.04786 -21.25151 -20.67313 -19.97801 -18.31286 -17.61374 -17.01112 -16.72330 -16.42284 -16.16431 -15.81382 -15.73254 -15.46955 -14.51808 -14.24526 -14.09850 -14.02097 -13.84646 -13.71886 -13.38742 -12.88390 -12.86928 -12.50338 -12.29817 -12.26862 -12.12856 -11.95138 -11.86494 -11.76897 -11.47656 -11.32703 -11.05054 -10.78092 -10.61822 -10.19072 -10.09385 -9.77239 -9.59490 -9.45648 -9.42987 -9.10508 -8.78954 -7.81144 -7.70869 -7.15047 -4.73301 0.65286 1.10292 1.95099 2.62299 2.82904 2.84760 2.90815 2.93664 2.98140 3.32995 3.52559 3.67193 3.86249 4.38894 4.42059 4.58203 4.70123 4.70540 4.77784 4.94076 5.03675 5.21870 5.31860 5.42199 5.45436 5.51792 5.62720 5.69128 5.95942 6.04019 6.09710 6.13653 6.16902 6.19641 6.29014 6.57016 6.69450 6.76797 6.96427 6.99608 7.10910 7.20016 7.35633 7.54446 7.73013 7.80455 7.95028 7.97981 8.30123 8.50517 8.62271 8.66813 9.76664 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.027850 B = 0.001909 C = 0.001863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.159201 B =14660.085539 C =15028.450122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.113 3.887 3 N -0.730 5.730 4 C 0.561 3.439 5 O -0.531 6.531 6 C -0.127 4.127 7 C -0.094 4.094 8 C -0.113 4.113 9 C -0.097 4.097 10 C 0.099 3.901 11 O -0.302 6.302 12 C 0.512 3.488 13 O -0.532 6.532 14 C -0.274 4.274 15 C -0.030 4.030 16 C -0.183 4.183 17 C 0.132 3.868 18 C -0.432 4.432 19 H 0.089 0.911 20 C 0.072 3.928 21 N -0.761 5.761 22 Si 0.917 3.083 23 H -0.263 1.263 24 H -0.274 1.274 25 H -0.258 1.258 26 C -0.238 4.238 27 C -0.027 4.027 28 C -0.062 4.062 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.400 0.600 35 H 0.127 0.873 36 H 0.136 0.864 37 H 0.136 0.864 38 H 0.102 0.898 39 H 0.122 0.878 40 H 0.290 0.710 41 H 0.101 0.899 42 H 0.104 0.896 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.773 -4.537 5.902 20.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.010 4.010 3 N -0.383 5.383 4 C 0.349 3.651 5 O -0.408 6.408 6 C -0.130 4.130 7 C -0.113 4.113 8 C -0.131 4.131 9 C -0.116 4.116 10 C 0.057 3.943 11 O -0.219 6.219 12 C 0.366 3.634 13 O -0.423 6.423 14 C -0.277 4.277 15 C -0.049 4.049 16 C -0.202 4.202 17 C 0.128 3.872 18 C -0.458 4.458 19 H 0.107 0.893 20 C -0.151 4.151 21 N -0.383 5.383 22 Si 0.740 3.260 23 H -0.188 1.188 24 H -0.199 1.199 25 H -0.181 1.181 26 C -0.257 4.257 27 C -0.046 4.046 28 C -0.081 4.081 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.235 0.765 35 H 0.145 0.855 36 H 0.154 0.846 37 H 0.154 0.846 38 H 0.121 0.879 39 H 0.140 0.860 40 H 0.101 0.899 41 H 0.120 0.880 42 H 0.122 0.878 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -18.406 -5.209 5.365 19.867 hybrid contribution 0.315 0.489 -0.262 0.638 sum -18.091 -4.719 5.104 19.380 Atomic orbital electron populations 1.22011 0.94328 1.03359 1.02570 1.21324 0.94243 0.82720 1.02700 1.45930 1.06891 1.09111 1.76407 1.18254 0.82189 0.88651 0.76015 1.90797 1.55321 1.45690 1.49003 1.19650 0.93721 0.92716 1.06903 1.21221 0.98821 0.92373 0.98871 1.20919 0.94833 0.96684 1.00679 1.21547 0.93053 0.99499 0.97497 1.18450 0.83002 0.92282 1.00529 1.84736 1.18583 1.83103 1.35470 1.21992 0.88372 0.73784 0.79260 1.90749 1.67401 1.48273 1.35863 1.18116 0.88404 1.25541 0.95614 1.20448 0.94568 0.95364 0.94539 1.20947 0.93528 1.06277 0.99435 1.17868 0.92753 0.85313 0.91241 1.19963 0.94744 1.33149 0.97978 0.89308 1.26181 1.01486 0.92443 0.94964 1.69732 1.38204 1.23379 1.07016 0.86149 0.80958 0.79089 0.79800 1.18755 1.19874 1.18134 1.20724 0.94474 1.12935 0.97548 1.20560 0.94329 0.93938 0.95761 1.21442 0.95062 0.96639 0.94981 0.91890 0.90653 0.91917 0.91281 0.91303 0.76465 0.85512 0.84643 0.84595 0.87944 0.85985 0.89857 0.88050 0.87839 0.84062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.73 10.03 37.16 0.37 -0.36 16 2 C 0.11 0.88 6.39 -4.04 -0.03 0.86 16 3 N -0.73 -6.58 5.51 -61.25 -0.34 -6.92 16 4 C 0.56 7.57 7.77 -12.32 -0.10 7.47 16 5 O -0.53 -9.27 16.35 5.32 0.09 -9.19 16 6 C -0.13 -1.71 5.87 -104.98 -0.62 -2.32 16 7 C -0.09 -0.94 9.54 -39.17 -0.37 -1.32 16 8 C -0.11 -1.18 10.03 -39.66 -0.40 -1.57 16 9 C -0.10 -1.34 9.98 -39.34 -0.39 -1.73 16 10 C 0.10 1.69 4.93 -39.26 -0.19 1.50 16 11 O -0.30 -5.94 9.24 -24.94 -0.23 -6.17 16 12 C 0.51 11.48 7.83 34.50 0.27 11.75 16 13 O -0.53 -12.84 16.09 -19.28 -0.31 -13.15 16 14 C -0.27 -6.42 5.89 -104.75 -0.62 -7.04 16 15 C -0.03 -0.73 9.52 -39.59 -0.38 -1.11 16 16 C -0.18 -4.57 8.63 -39.28 -0.34 -4.91 16 17 C 0.13 3.29 5.56 -106.80 -0.59 2.70 16 18 C -0.43 -10.41 9.04 -37.75 -0.34 -10.75 16 19 H 0.09 2.02 7.91 -52.49 -0.42 1.60 16 20 C 0.07 1.64 5.12 -17.31 -0.09 1.55 16 21 N -0.76 -17.99 11.02 55.56 0.61 -17.38 16 22 Si 0.92 16.82 29.60 -169.99 -5.03 11.79 16 23 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 24 H -0.27 -4.92 7.11 56.52 0.40 -4.52 16 25 H -0.26 -4.66 7.11 56.52 0.40 -4.26 16 26 C -0.24 -5.48 9.73 -39.27 -0.38 -5.87 16 27 C -0.03 -0.60 9.55 -39.59 -0.38 -0.98 16 28 C -0.06 -1.02 9.51 -39.02 -0.37 -1.39 16 29 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.40 2.38 6.50 -40.82 -0.27 2.11 16 35 H 0.13 0.75 6.40 -52.48 -0.34 0.41 16 36 H 0.14 0.94 8.06 -52.48 -0.42 0.52 16 37 H 0.14 1.70 8.06 -52.49 -0.42 1.27 16 38 H 0.10 2.41 7.63 -52.48 -0.40 2.01 16 39 H 0.12 3.09 6.23 -52.48 -0.33 2.76 16 40 H 0.29 6.14 8.29 -40.82 -0.34 5.81 16 41 H 0.10 2.14 8.06 -52.49 -0.42 1.72 16 42 H 0.10 2.04 7.59 -52.49 -0.40 1.64 16 43 H 0.14 2.52 7.65 -52.49 -0.40 2.11 16 LS Contribution 377.13 15.07 5.68 5.68 Total: -1.00 -30.72 377.13 -9.53 -40.25 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -5.06 Total: 8.62 kcal Atomic # 6 Polarization: -8.59 SS G_CDS: -4.94 Total: -13.53 kcal Atomic # 7 Polarization: -24.57 SS G_CDS: 0.28 Total: -24.30 kcal Atomic # 8 Polarization: -28.06 SS G_CDS: -0.45 Total: -28.51 kcal Atomic # 14 Polarization: 16.82 SS G_CDS: -5.03 Total: 11.79 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.72 -9.53 -40.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089623113.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.566 kcal (2) G-P(sol) polarization free energy of solvation -30.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds