Wall clock time and date at job start Sat Apr 11 2020 05:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81396 * 103.00135 * 2 1 4 4 H 1.09004 * 109.47253 * 305.00207 * 3 2 1 5 5 C 1.53007 * 109.47000 * 65.00096 * 3 2 1 6 6 O 1.42902 * 109.47033 * 65.00108 * 5 3 2 7 7 C 1.52995 * 109.47529 * 184.99939 * 3 2 1 8 8 H 1.09002 * 109.47634 * 180.02562 * 7 3 2 9 9 C 1.53007 * 109.46851 * 60.00066 * 7 3 2 10 10 N 1.46502 * 109.47290 * 300.00301 * 7 3 2 11 11 C 1.34776 * 119.99879 * 204.99733 * 10 7 3 12 12 O 1.21278 * 120.00353 * 359.97438 * 11 10 7 13 13 C 1.50703 * 119.99542 * 179.97438 * 11 10 7 14 14 C 1.50699 * 109.46686 * 179.97438 * 13 11 10 15 15 C 1.38318 * 119.97114 * 269.72518 * 14 13 11 16 16 C 1.38284 * 120.14169 * 179.76845 * 15 14 13 17 17 C 1.38115 * 120.06619 * 0.51188 * 16 15 14 18 18 C 1.38857 * 119.93295 * 359.74250 * 17 16 15 19 19 O 1.35748 * 120.06705 * 179.97438 * 18 17 16 20 20 C 1.34831 * 117.00338 * 354.48600 * 19 18 17 21 21 H 1.07997 * 119.99582 * 5.06224 * 20 19 18 22 22 C 1.38653 * 119.99885 * 185.06099 * 20 19 18 23 23 N 1.31556 * 119.99768 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 120.00444 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.47396 * 89.99617 * 24 22 20 26 26 H 1.48494 * 109.47062 * 209.99991 * 24 22 20 27 27 H 1.48504 * 109.46573 * 329.99689 * 24 22 20 28 28 C 1.38082 * 119.96386 * 90.00362 * 14 13 11 29 29 H 1.09006 * 109.46908 * 299.99621 * 1 2 3 30 30 H 1.08996 * 109.47109 * 59.99860 * 1 2 3 31 31 H 1.09004 * 109.46738 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46860 * 185.00186 * 5 3 2 33 33 H 1.08997 * 109.46707 * 305.00138 * 5 3 2 34 34 H 0.96692 * 113.99596 * 179.97438 * 6 5 3 35 35 H 1.08999 * 109.47264 * 299.99943 * 9 7 3 36 36 H 1.08996 * 109.46726 * 60.00282 * 9 7 3 37 37 H 1.09004 * 109.46791 * 180.02562 * 9 7 3 38 38 H 0.96993 * 119.99703 * 24.99522 * 10 7 3 39 39 H 1.08995 * 109.47143 * 300.00091 * 13 11 10 40 40 H 1.09002 * 109.47070 * 60.00450 * 13 11 10 41 41 H 1.08001 * 119.92853 * 0.02562 * 15 14 13 42 42 H 1.08003 * 119.96283 * 180.25580 * 16 15 14 43 43 H 1.08003 * 120.03553 * 179.72694 * 17 16 15 44 44 H 0.97003 * 120.00196 * 180.02562 * 23 22 20 45 45 H 1.07995 * 120.03754 * 359.95151 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7294 2.2541 -0.8418 5 6 1.7428 2.4015 1.3074 6 8 2.4730 1.8449 2.4025 7 6 3.7369 1.9412 -0.1257 8 1 3.9822 3.0033 -0.1252 9 6 4.2162 1.3071 -1.4331 10 7 4.3991 1.2871 1.0057 11 6 5.6189 1.7002 1.4032 12 8 6.1686 2.6129 0.8240 13 6 6.2997 1.0277 2.5674 14 6 7.6411 1.6719 2.8052 15 6 8.7663 1.1804 2.1683 16 6 9.9982 1.7718 2.3803 17 6 10.1103 2.8492 3.2372 18 6 8.9835 3.3417 3.8821 19 8 9.0906 4.4001 4.7254 20 6 10.3336 4.8549 4.9820 21 1 11.1809 4.4336 4.4616 22 6 10.5240 5.8636 5.9142 23 7 11.7369 6.3070 6.1650 24 14 9.0585 6.5919 6.8149 25 1 8.8134 5.8251 8.0628 26 1 9.3400 8.0102 7.1526 27 1 7.8570 6.5192 5.9452 28 6 7.7467 2.7487 3.6630 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.9075 3.4784 1.2707 33 1 0.6797 2.2009 1.4401 34 1 2.2211 2.2020 3.2650 35 1 3.9710 0.2451 -1.4331 36 1 3.7236 1.7938 -2.2748 37 1 5.2955 1.4305 -1.5225 38 1 3.9595 0.5569 1.4687 39 1 5.6824 1.1329 3.4595 40 1 6.4394 -0.0302 2.3449 41 1 8.6819 0.3355 1.5009 42 1 10.8742 1.3883 1.8783 43 1 11.0734 3.3079 3.4058 44 1 11.8702 7.0124 6.8174 45 1 6.8684 3.1298 4.1629 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089860626.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:47 Heat of formation + Delta-G solvation = -107.336572 kcal Electronic energy + Delta-G solvation = -27000.492952 eV Core-core repulsion = 23109.388823 eV Total energy + Delta-G solvation = -3891.104129 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.18340 -40.53610 -38.68031 -38.04446 -36.22089 -34.47296 -33.69029 -32.60727 -31.06158 -30.50441 -29.22548 -28.32015 -27.15188 -24.60530 -23.42293 -22.90206 -21.96094 -21.28552 -19.64776 -18.90755 -18.56511 -17.89736 -17.65194 -16.85824 -16.74404 -16.32670 -16.02010 -15.81167 -15.72047 -15.62069 -15.42727 -15.06650 -14.61799 -14.56862 -14.36811 -14.16043 -14.10259 -13.92160 -13.75979 -13.59857 -13.32812 -13.02839 -12.83638 -12.73624 -12.52707 -12.43042 -12.38843 -12.31856 -11.92632 -11.89717 -11.30070 -11.12338 -10.91577 -10.78115 -10.61029 -9.83095 -9.64066 -9.04912 -8.54274 -8.49450 -6.22167 0.51295 0.66935 0.71708 1.29629 1.34845 1.51505 1.64383 1.83648 2.28594 2.36376 2.80680 3.06504 3.16418 3.24451 3.56253 3.83251 3.90167 4.09308 4.19297 4.30078 4.32058 4.33294 4.39476 4.41518 4.45968 4.49226 4.54423 4.58148 4.61138 4.68164 4.73230 4.79957 4.96982 4.97379 5.01842 5.26922 5.29723 5.40641 5.66989 5.68267 5.74900 5.77853 5.92540 6.26548 6.76869 6.84742 6.93615 7.48775 7.59888 8.62429 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017754 B = 0.002509 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.772314 B =11158.692349 C =12157.464491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.260 6.260 3 C -0.062 4.062 4 H 0.128 0.872 5 C 0.083 3.917 6 O -0.569 6.569 7 C 0.166 3.834 8 H 0.073 0.927 9 C -0.160 4.160 10 N -0.688 5.688 11 C 0.516 3.484 12 O -0.586 6.586 13 C -0.089 4.089 14 C -0.024 4.024 15 C -0.173 4.173 16 C -0.078 4.078 17 C -0.242 4.242 18 C 0.120 3.880 19 O -0.246 6.246 20 C -0.400 4.400 21 H 0.079 0.921 22 C 0.008 3.992 23 N -0.924 5.924 24 Si 0.973 3.027 25 H -0.262 1.262 26 H -0.266 1.266 27 H -0.267 1.267 28 C -0.180 4.180 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.108 0.892 32 H 0.053 0.947 33 H 0.065 0.935 34 H 0.393 0.607 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.039 0.961 38 H 0.417 0.583 39 H 0.123 0.877 40 H 0.133 0.867 41 H 0.145 0.855 42 H 0.140 0.860 43 H 0.107 0.893 44 H 0.285 0.715 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.461 -15.275 -12.455 34.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.289 4.289 2 S -0.035 6.035 3 C -0.191 4.191 4 H 0.145 0.855 5 C 0.003 3.997 6 O -0.377 6.377 7 C 0.059 3.941 8 H 0.091 0.909 9 C -0.219 4.219 10 N -0.342 5.342 11 C 0.304 3.696 12 O -0.466 6.466 13 C -0.129 4.129 14 C -0.024 4.024 15 C -0.192 4.192 16 C -0.096 4.096 17 C -0.261 4.261 18 C 0.071 3.929 19 O -0.154 6.154 20 C -0.476 4.476 21 H 0.096 0.904 22 C -0.190 4.190 23 N -0.565 5.565 24 Si 0.795 3.205 25 H -0.186 1.186 26 H -0.191 1.191 27 H -0.191 1.191 28 C -0.199 4.199 29 H 0.102 0.898 30 H 0.106 0.894 31 H 0.126 0.874 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.242 0.758 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.058 0.942 38 H 0.257 0.743 39 H 0.141 0.859 40 H 0.151 0.849 41 H 0.163 0.837 42 H 0.158 0.842 43 H 0.125 0.875 44 H 0.094 0.906 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -27.192 -15.590 -13.119 33.979 hybrid contribution -0.814 1.901 0.993 2.294 sum -28.006 -13.689 -12.126 33.448 Atomic orbital electron populations 1.23519 0.92361 1.07326 1.05691 1.87022 1.09330 1.09480 1.97650 1.23733 0.98157 0.95929 1.01276 0.85457 1.22214 0.95148 0.96313 0.86071 1.86453 1.64933 1.68240 1.18068 1.20548 0.88884 0.97721 0.86900 0.90877 1.22191 1.00859 1.02266 0.96558 1.45860 1.17168 1.38047 1.33121 1.20760 0.81571 0.82747 0.84555 1.90731 1.66019 1.31762 1.58108 1.20643 0.92473 1.01532 0.98225 1.19214 0.95325 0.93770 0.94108 1.20996 0.91775 1.03141 1.03247 1.21095 0.98826 0.93877 0.95759 1.21307 0.98387 1.02301 1.04092 1.19578 0.95203 0.87388 0.90738 1.83503 1.30512 1.42478 1.58945 1.20716 0.82323 1.20385 1.24178 0.90355 1.25301 1.00385 0.96293 0.97013 1.69735 1.22078 1.29486 1.35227 0.85194 0.78582 0.77930 0.78829 1.18620 1.19065 1.19122 1.20242 0.94586 0.99650 1.05392 0.89810 0.89449 0.87357 0.92880 0.91655 0.75762 0.90767 0.90162 0.94163 0.74316 0.85896 0.84942 0.83743 0.84239 0.87484 0.90579 0.86045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.70 10.45 113.37 1.18 0.49 16 2 S -0.26 -3.06 18.97 -56.49 -1.07 -4.13 16 3 C -0.06 -0.71 2.58 30.60 0.08 -0.63 16 4 H 0.13 1.01 8.14 -2.39 -0.02 0.99 16 5 C 0.08 0.81 6.58 71.98 0.47 1.29 16 6 O -0.57 -6.68 10.35 -148.98 -1.54 -8.22 16 7 C 0.17 3.03 2.31 44.99 0.10 3.14 16 8 H 0.07 1.70 7.58 -2.39 -0.02 1.69 16 9 C -0.16 -2.87 9.25 71.98 0.67 -2.20 16 10 N -0.69 -13.71 3.42 -442.52 -1.51 -15.23 16 11 C 0.52 14.14 7.79 87.66 0.68 14.82 16 12 O -0.59 -22.32 15.70 -3.02 -0.05 -22.37 16 13 C -0.09 -2.13 5.83 29.10 0.17 -1.96 16 14 C -0.02 -0.81 4.37 -19.88 -0.09 -0.90 16 15 C -0.17 -5.86 9.70 22.30 0.22 -5.65 16 16 C -0.08 -2.99 10.04 22.25 0.22 -2.76 16 17 C -0.24 -11.64 9.17 22.39 0.21 -11.44 16 18 C 0.12 6.10 6.65 22.58 0.15 6.25 16 19 O -0.25 -14.29 8.59 -22.72 -0.20 -14.48 16 20 C -0.40 -24.80 9.95 67.92 0.68 -24.12 16 21 H 0.08 5.10 5.44 -2.91 -0.02 5.08 16 22 C 0.01 0.48 5.49 84.83 0.47 0.95 16 23 N -0.92 -57.00 13.96 21.61 0.30 -56.70 16 24 Si 0.97 47.12 28.62 68.60 1.96 49.08 16 25 H -0.26 -11.99 7.11 99.48 0.71 -11.29 16 26 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 27 H -0.27 -13.05 7.11 99.48 0.71 -12.35 16 28 C -0.18 -7.62 9.65 22.39 0.22 -7.40 16 29 H 0.08 0.37 7.02 -2.39 -0.02 0.36 16 30 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.07 0.40 6.72 -2.39 -0.02 0.38 16 34 H 0.39 2.21 9.12 -74.06 -0.68 1.53 16 35 H 0.07 1.25 6.91 -2.39 -0.02 1.23 16 36 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.42 7.07 6.34 -92.71 -0.59 6.48 16 39 H 0.12 2.40 8.08 -2.39 -0.02 2.38 16 40 H 0.13 2.25 8.08 -2.39 -0.02 2.23 16 41 H 0.14 3.79 8.06 -2.91 -0.02 3.77 16 42 H 0.14 4.43 8.06 -2.91 -0.02 4.41 16 43 H 0.11 5.59 5.64 -2.91 -0.02 5.57 16 44 H 0.28 16.03 8.31 -92.71 -0.77 15.26 16 45 H 0.12 4.82 8.06 -2.91 -0.02 4.80 16 Total: -1.00 -80.61 382.99 3.08 -77.53 By element: Atomic # 1 Polarization: 24.89 SS G_CDS: -0.24 Total: 24.65 kcal Atomic # 6 Polarization: -35.56 SS G_CDS: 5.42 Total: -30.13 kcal Atomic # 7 Polarization: -70.71 SS G_CDS: -1.21 Total: -71.92 kcal Atomic # 8 Polarization: -43.28 SS G_CDS: -1.78 Total: -45.07 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 1.96 Total: 49.08 kcal Atomic # 16 Polarization: -3.06 SS G_CDS: -1.07 Total: -4.13 kcal Total: -80.61 3.08 -77.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089860626.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.808 kcal (2) G-P(sol) polarization free energy of solvation -80.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds