Wall clock time and date at job start Sat Apr 11 2020 05:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42904 * 109.47413 * 2 1 4 4 C 1.42901 * 113.99904 * 179.97438 * 3 2 1 5 5 C 1.53038 * 109.46255 * 270.02747 * 4 3 2 6 6 C 1.53200 * 109.31055 * 178.60091 * 5 4 3 7 7 N 1.46928 * 108.76204 * 54.65678 * 6 5 4 8 8 S 1.65597 * 120.62757 * 126.40491 * 7 6 5 9 9 O 1.42103 * 106.40210 * 23.51593 * 8 7 6 10 10 O 1.42100 * 106.40278 * 156.43521 * 8 7 6 11 11 C 1.76209 * 107.21936 * 269.97739 * 8 7 6 12 12 C 1.38630 * 119.74500 * 269.73042 * 11 8 7 13 13 C 1.37623 * 120.24460 * 179.72148 * 12 11 8 14 14 C 1.40723 * 119.74242 * 0.52580 * 13 12 11 15 15 C 1.41397 * 120.24276 * 179.72730 * 14 13 12 16 16 H 1.07995 * 119.99687 * 155.30957 * 15 14 13 17 17 C 1.39940 * 119.99919 * 335.30926 * 15 14 13 18 18 N 1.30825 * 120.00177 * 342.23256 * 17 15 14 19 19 Si 1.86807 * 120.00197 * 162.23459 * 17 15 14 20 20 H 1.48494 * 109.46992 * 94.65918 * 19 17 15 21 21 H 1.48495 * 109.47150 * 214.66555 * 19 17 15 22 22 H 1.48504 * 109.46431 * 334.66376 * 19 17 15 23 23 C 1.40714 * 119.51181 * 359.74519 * 14 13 12 24 24 C 1.37616 * 119.74481 * 0.02562 * 23 14 13 25 25 C 1.46918 * 118.74001 * 306.38364 * 7 6 5 26 26 C 1.53038 * 109.45687 * 149.97212 * 4 3 2 27 27 H 1.09006 * 109.47128 * 300.00513 * 1 2 3 28 28 H 1.08999 * 109.47475 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.47115 * 59.99675 * 1 2 3 30 30 H 1.09002 * 109.46643 * 119.99783 * 2 1 3 31 31 H 1.08996 * 109.47502 * 239.99825 * 2 1 3 32 32 H 1.09001 * 109.45973 * 30.00861 * 4 3 2 33 33 H 1.08995 * 109.49734 * 298.56619 * 5 4 3 34 34 H 1.08999 * 109.49636 * 58.66999 * 5 4 3 35 35 H 1.08998 * 109.59496 * 294.87135 * 6 5 4 36 36 H 1.09003 * 109.70046 * 174.50724 * 6 5 4 37 37 H 1.07991 * 119.88000 * 359.97438 * 12 11 8 38 38 H 1.07994 * 120.12879 * 180.27357 * 13 12 11 39 39 H 0.97002 * 120.00507 * 180.02562 * 18 17 15 40 40 H 1.08000 * 120.12561 * 179.97438 * 23 14 13 41 41 H 1.08004 * 119.87370 * 180.02562 * 24 23 14 42 42 H 1.08998 * 109.59001 * 293.81995 * 25 7 6 43 43 H 1.09004 * 109.58996 * 173.39697 * 25 7 6 44 44 H 1.09004 * 109.50236 * 301.34307 * 26 4 3 45 45 H 1.09004 * 109.49307 * 61.43867 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4600 0.0006 5 6 3.9387 1.4998 1.4437 6 6 5.4683 1.5854 1.4404 7 7 5.8753 2.7384 0.6258 8 16 6.8857 3.8948 1.2456 9 8 7.6101 3.2724 2.2979 10 8 7.5126 4.5180 0.1331 11 6 5.8721 5.1239 1.9985 12 6 5.4341 6.2064 1.2514 13 6 4.6373 7.1694 1.8275 14 6 4.2767 7.0577 3.1831 15 6 3.4633 8.0440 3.7873 16 1 2.8664 7.7958 4.6524 17 6 3.4318 9.3415 3.2641 18 7 4.3819 9.7463 2.4611 19 14 2.0330 10.4957 3.7124 20 1 2.4393 11.3424 4.8626 21 1 1.7133 11.3613 2.5490 22 1 0.8345 9.7005 4.0821 23 6 4.7318 5.9575 3.9331 24 6 5.5237 5.0041 3.3350 25 6 5.3692 2.8457 -0.7493 26 6 3.8409 2.7456 -0.7215 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 1.8932 -0.5138 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 3.8634 0.6014 -0.5131 33 1 3.5264 2.3722 1.9506 34 1 3.6264 0.5945 1.9643 35 1 5.8846 0.6723 1.0151 36 1 5.8314 1.7121 2.4603 37 1 5.7158 6.2923 0.2124 38 1 4.2936 8.0096 1.2426 39 1 4.3603 10.6459 2.0988 40 1 4.4613 5.8621 4.9744 41 1 5.8738 4.1586 3.9086 42 1 5.7775 2.0354 -1.3533 43 1 5.6649 3.8052 -1.1737 44 1 3.4588 2.7272 -1.7423 45 1 3.4294 3.6061 -0.1940 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092131314.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:55 Heat of formation + Delta-G solvation = -117.624774 kcal Electronic energy + Delta-G solvation = -28075.876395 eV Core-core repulsion = 24184.326136 eV Total energy + Delta-G solvation = -3891.550259 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -39.19095 -37.55376 -36.85857 -36.58186 -35.14429 -34.02128 -32.21554 -31.07329 -30.23994 -30.17598 -29.45158 -25.80178 -24.03108 -23.45876 -22.67947 -21.49872 -21.13190 -20.38762 -18.48624 -17.63194 -17.42311 -16.77155 -16.49675 -15.79287 -15.58647 -15.37861 -14.70216 -14.30326 -14.28267 -14.10722 -13.78361 -13.39456 -13.30440 -13.18951 -12.74417 -12.47678 -12.39472 -12.22325 -12.17035 -12.02054 -11.73705 -11.50143 -11.45070 -11.39554 -11.32473 -11.20890 -11.16413 -11.04677 -10.86343 -10.76314 -10.46171 -10.40224 -9.74839 -9.61724 -9.49726 -9.46594 -8.75778 -7.92950 -7.68730 -7.12443 -4.78174 1.18042 2.27446 2.88059 2.90273 2.94032 2.96956 3.50643 3.61594 3.68032 4.25883 4.53657 4.70481 4.74355 4.87219 4.95057 5.01777 5.14444 5.18549 5.24492 5.26742 5.36270 5.38143 5.42983 5.61220 5.71678 5.72719 5.75656 5.79260 5.92316 5.95678 6.06799 6.12678 6.22439 6.31405 6.36386 6.67171 6.70206 6.81268 7.00020 7.06878 7.21414 7.35469 7.44032 7.64753 7.78380 7.98555 8.33471 8.52979 8.66724 9.79135 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010142 B = 0.003911 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2760.222005 B = 7156.945332 C = 8945.388849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.381 6.381 4 C 0.097 3.903 5 C -0.157 4.157 6 C 0.129 3.871 7 N -1.005 6.005 8 S 2.691 3.309 9 O -0.983 6.983 10 O -0.981 6.981 11 C -0.785 4.785 12 C -0.015 4.015 13 C -0.182 4.182 14 C 0.140 3.860 15 C -0.436 4.436 16 H 0.087 0.913 17 C 0.073 3.927 18 N -0.765 5.765 19 Si 0.916 3.084 20 H -0.266 1.266 21 H -0.271 1.271 22 H -0.256 1.256 23 C -0.238 4.238 24 C 0.002 3.998 25 C 0.129 3.871 26 C -0.133 4.133 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.046 0.954 31 H 0.045 0.955 32 H 0.058 0.942 33 H 0.083 0.917 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.093 0.907 37 H 0.102 0.898 38 H 0.122 0.878 39 H 0.289 0.711 40 H 0.099 0.901 41 H 0.102 0.898 42 H 0.066 0.934 43 H 0.096 0.904 44 H 0.077 0.923 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.179 -13.904 -5.498 15.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.301 6.301 4 C 0.039 3.961 5 C -0.197 4.197 6 C 0.003 3.997 7 N -0.841 5.841 8 S 2.791 3.209 9 O -0.974 6.974 10 O -0.971 6.971 11 C -0.882 4.882 12 C -0.035 4.035 13 C -0.202 4.202 14 C 0.137 3.863 15 C -0.464 4.464 16 H 0.105 0.895 17 C -0.150 4.150 18 N -0.387 5.387 19 Si 0.739 3.261 20 H -0.191 1.191 21 H -0.196 1.196 22 H -0.180 1.180 23 C -0.259 4.259 24 C -0.018 4.018 25 C 0.003 3.997 26 C -0.172 4.172 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.102 0.898 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.111 0.889 37 H 0.120 0.880 38 H 0.139 0.861 39 H 0.100 0.900 40 H 0.117 0.883 41 H 0.120 0.880 42 H 0.084 0.916 43 H 0.114 0.886 44 H 0.095 0.905 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.242 -13.606 -5.725 15.359 hybrid contribution -1.093 0.719 0.465 1.389 sum -5.335 -12.887 -5.260 14.907 Atomic orbital electron populations 1.21742 0.93955 1.01948 1.03234 1.22461 0.95473 0.84319 0.99720 1.87966 1.21201 1.25875 1.95045 1.21992 0.80617 0.98026 0.95430 1.22439 0.96095 1.03529 0.97598 1.21257 0.93918 0.88468 0.96049 1.58044 1.67347 1.37465 1.21227 1.01382 0.73850 0.72831 0.72832 1.93469 1.70021 1.76833 1.57044 1.93477 1.73927 1.76362 1.53374 1.29175 1.34245 1.18840 1.05900 1.20224 0.93908 0.92333 0.97037 1.21325 1.03594 1.00000 0.95322 1.17840 0.86879 0.90287 0.91315 1.19931 1.21075 0.93686 1.11660 0.89484 1.26132 0.96110 0.99513 0.93198 1.69825 1.27842 1.19007 1.22076 0.86161 0.81214 0.79472 0.79282 1.19117 1.19577 1.17997 1.21012 1.06578 0.99654 0.98629 1.20126 0.93224 0.96452 0.92016 1.21290 0.92780 1.03270 0.82321 1.22010 0.95850 0.98164 1.01170 0.91759 0.91389 0.91926 0.93557 0.93715 0.92421 0.89806 0.91135 0.91691 0.88887 0.88011 0.86072 0.89967 0.88268 0.88006 0.91561 0.88585 0.90481 0.89795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 10.28 37.16 0.38 -0.88 16 2 C 0.06 0.54 6.47 37.16 0.24 0.78 16 3 O -0.38 -4.84 9.99 -35.23 -0.35 -5.19 16 4 C 0.10 1.14 2.57 -26.69 -0.07 1.07 16 5 C -0.16 -1.92 5.69 -26.61 -0.15 -2.07 16 6 C 0.13 1.66 6.38 -3.71 -0.02 1.64 16 7 N -1.01 -15.25 3.29 -113.52 -0.37 -15.62 16 8 S 2.69 52.27 5.68 -107.50 -0.61 51.66 16 9 O -0.98 -20.73 15.97 -57.17 -0.91 -21.65 16 10 O -0.98 -20.97 15.97 -57.17 -0.91 -21.88 16 11 C -0.79 -17.30 6.00 -39.29 -0.24 -17.54 16 12 C -0.01 -0.34 9.49 -39.66 -0.38 -0.72 16 13 C -0.18 -4.56 8.70 -38.87 -0.34 -4.90 16 14 C 0.14 3.57 5.57 -106.82 -0.60 2.98 16 15 C -0.44 -10.76 9.05 -37.74 -0.34 -11.11 16 16 H 0.09 2.03 7.91 -52.49 -0.41 1.61 16 17 C 0.07 1.69 5.14 -17.34 -0.09 1.60 16 18 N -0.77 -18.46 10.97 55.55 0.61 -17.85 16 19 Si 0.92 17.12 29.60 -169.99 -5.03 12.09 16 20 H -0.27 -4.92 7.11 56.52 0.40 -4.52 16 21 H -0.27 -4.96 7.11 56.52 0.40 -4.55 16 22 H -0.26 -4.76 7.11 56.52 0.40 -4.36 16 23 C -0.24 -5.65 9.80 -38.87 -0.38 -6.03 16 24 C 0.00 0.04 9.49 -39.66 -0.38 -0.33 16 25 C 0.13 1.68 6.38 -3.72 -0.02 1.66 16 26 C -0.13 -1.66 5.73 -26.61 -0.15 -1.81 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.40 7.84 -51.93 -0.41 0.00 16 31 H 0.04 0.37 8.08 -51.93 -0.42 -0.05 16 32 H 0.06 0.58 7.79 -51.93 -0.40 0.18 16 33 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.07 0.73 7.84 -51.93 -0.41 0.32 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.09 1.25 7.12 -51.93 -0.37 0.88 16 37 H 0.10 2.18 7.59 -52.49 -0.40 1.78 16 38 H 0.12 3.08 6.18 -52.49 -0.32 2.75 16 39 H 0.29 6.25 8.30 -40.82 -0.34 5.91 16 40 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 41 H 0.10 2.04 7.60 -52.48 -0.40 1.64 16 42 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.10 1.31 7.13 -51.93 -0.37 0.94 16 44 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 376.09 15.07 5.67 5.67 Total: -1.00 -30.02 376.09 -11.30 -41.33 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -6.85 Total: 7.12 kcal Atomic # 6 Polarization: -33.13 SS G_CDS: -2.53 Total: -35.66 kcal Atomic # 7 Polarization: -33.72 SS G_CDS: 0.24 Total: -33.48 kcal Atomic # 8 Polarization: -46.54 SS G_CDS: -2.18 Total: -48.72 kcal Atomic # 14 Polarization: 17.12 SS G_CDS: -5.03 Total: 12.09 kcal Atomic # 16 Polarization: 52.27 SS G_CDS: -0.61 Total: 51.66 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -30.02 -11.30 -41.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092131314.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.299 kcal (2) G-P(sol) polarization free energy of solvation -30.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds