Wall clock time and date at job start Sat Apr 11 2020 05:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42904 * 109.47413 * 2 1 4 4 C 1.42901 * 113.99904 * 179.97438 * 3 2 1 5 5 C 1.53038 * 109.46255 * 270.02747 * 4 3 2 6 6 C 1.53200 * 109.31055 * 178.60091 * 5 4 3 7 7 N 1.46928 * 108.76204 * 54.65678 * 6 5 4 8 8 S 1.65597 * 120.62757 * 126.40491 * 7 6 5 9 9 O 1.42103 * 106.40210 * 23.51593 * 8 7 6 10 10 O 1.42100 * 106.40278 * 156.43521 * 8 7 6 11 11 C 1.76209 * 107.21936 * 269.97739 * 8 7 6 12 12 C 1.38630 * 119.74500 * 269.73042 * 11 8 7 13 13 C 1.37623 * 120.24460 * 179.72148 * 12 11 8 14 14 C 1.40723 * 119.74242 * 0.52580 * 13 12 11 15 15 C 1.41397 * 120.24276 * 179.72730 * 14 13 12 16 16 H 1.07995 * 119.99687 * 155.30957 * 15 14 13 17 17 C 1.39940 * 119.99919 * 335.30926 * 15 14 13 18 18 N 1.30825 * 120.00177 * 342.23256 * 17 15 14 19 19 Si 1.86807 * 120.00197 * 162.23459 * 17 15 14 20 20 H 1.48494 * 109.46992 * 94.65918 * 19 17 15 21 21 H 1.48495 * 109.47150 * 214.66555 * 19 17 15 22 22 H 1.48504 * 109.46431 * 334.66376 * 19 17 15 23 23 C 1.40714 * 119.51181 * 359.74519 * 14 13 12 24 24 C 1.37616 * 119.74481 * 0.02562 * 23 14 13 25 25 C 1.46918 * 118.74001 * 306.38364 * 7 6 5 26 26 C 1.53038 * 109.45687 * 149.97212 * 4 3 2 27 27 H 1.09006 * 109.47128 * 300.00513 * 1 2 3 28 28 H 1.08999 * 109.47475 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.47115 * 59.99675 * 1 2 3 30 30 H 1.09002 * 109.46643 * 119.99783 * 2 1 3 31 31 H 1.08996 * 109.47502 * 239.99825 * 2 1 3 32 32 H 1.09001 * 109.45973 * 30.00861 * 4 3 2 33 33 H 1.08995 * 109.49734 * 298.56619 * 5 4 3 34 34 H 1.08999 * 109.49636 * 58.66999 * 5 4 3 35 35 H 1.08998 * 109.59496 * 294.87135 * 6 5 4 36 36 H 1.09003 * 109.70046 * 174.50724 * 6 5 4 37 37 H 1.07991 * 119.88000 * 359.97438 * 12 11 8 38 38 H 1.07994 * 120.12879 * 180.27357 * 13 12 11 39 39 H 0.97002 * 120.00507 * 180.02562 * 18 17 15 40 40 H 1.08000 * 120.12561 * 179.97438 * 23 14 13 41 41 H 1.08004 * 119.87370 * 180.02562 * 24 23 14 42 42 H 1.08998 * 109.59001 * 293.81995 * 25 7 6 43 43 H 1.09004 * 109.58996 * 173.39697 * 25 7 6 44 44 H 1.09004 * 109.50236 * 301.34307 * 26 4 3 45 45 H 1.09004 * 109.49307 * 61.43867 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4600 0.0006 5 6 3.9387 1.4998 1.4437 6 6 5.4683 1.5854 1.4404 7 7 5.8753 2.7384 0.6258 8 16 6.8857 3.8948 1.2456 9 8 7.6101 3.2724 2.2979 10 8 7.5126 4.5180 0.1331 11 6 5.8721 5.1239 1.9985 12 6 5.4341 6.2064 1.2514 13 6 4.6373 7.1694 1.8275 14 6 4.2767 7.0577 3.1831 15 6 3.4633 8.0440 3.7873 16 1 2.8664 7.7958 4.6524 17 6 3.4318 9.3415 3.2641 18 7 4.3819 9.7463 2.4611 19 14 2.0330 10.4957 3.7124 20 1 2.4393 11.3424 4.8626 21 1 1.7133 11.3613 2.5490 22 1 0.8345 9.7005 4.0821 23 6 4.7318 5.9575 3.9331 24 6 5.5237 5.0041 3.3350 25 6 5.3692 2.8457 -0.7493 26 6 3.8409 2.7456 -0.7215 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 1.8932 -0.5138 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 3.8634 0.6014 -0.5131 33 1 3.5264 2.3722 1.9506 34 1 3.6264 0.5945 1.9643 35 1 5.8846 0.6723 1.0151 36 1 5.8314 1.7121 2.4603 37 1 5.7158 6.2923 0.2124 38 1 4.2936 8.0096 1.2426 39 1 4.3603 10.6459 2.0988 40 1 4.4613 5.8621 4.9744 41 1 5.8738 4.1586 3.9086 42 1 5.7775 2.0354 -1.3533 43 1 5.6649 3.8052 -1.1737 44 1 3.4588 2.7272 -1.7423 45 1 3.4294 3.6061 -0.1940 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092131314.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:54 Heat of formation + Delta-G solvation = -135.891224 kcal Electronic energy + Delta-G solvation = -28076.668488 eV Core-core repulsion = 24184.326136 eV Total energy + Delta-G solvation = -3892.342351 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.14485 -39.38133 -38.22835 -37.84340 -36.80272 -35.80889 -33.11495 -32.10293 -32.06388 -31.29799 -31.06376 -27.62539 -25.04245 -24.45827 -23.44716 -23.28838 -22.95682 -21.48646 -19.84270 -19.43950 -18.86555 -18.24019 -17.59228 -17.24589 -16.95462 -16.44087 -15.86490 -15.69449 -15.64984 -15.31846 -15.14734 -14.93834 -14.67165 -14.24537 -14.12336 -13.99280 -13.77614 -13.55024 -13.53791 -13.11188 -13.02931 -12.98072 -12.93732 -12.88037 -12.83185 -12.57609 -12.49742 -12.18184 -12.06246 -11.96731 -11.69774 -11.55749 -11.40408 -11.32629 -11.20358 -10.35648 -10.01731 -9.75131 -9.55540 -8.87762 -6.65586 -0.36297 0.48690 1.04669 1.34250 1.40687 1.51559 2.09490 2.15021 2.52069 2.73005 2.94757 3.46064 3.50654 3.70293 3.87920 4.05944 4.15044 4.23311 4.27893 4.30086 4.31665 4.39765 4.41712 4.49224 4.54947 4.72148 4.77683 4.78624 4.84735 4.89338 4.95721 4.96656 5.07428 5.10277 5.21389 5.23415 5.25102 5.28132 5.38640 5.51081 5.58300 5.68298 5.78776 5.92659 6.14849 6.41374 6.48243 6.67586 6.80419 8.07707 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010142 B = 0.003911 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2760.222005 B = 7156.945332 C = 8945.388849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.049 3.951 3 O -0.407 6.407 4 C 0.097 3.903 5 C -0.154 4.154 6 C 0.121 3.879 7 N -0.998 5.998 8 S 2.719 3.281 9 O -0.997 6.997 10 O -0.999 6.999 11 C -0.796 4.796 12 C -0.020 4.020 13 C -0.207 4.207 14 C 0.112 3.888 15 C -0.469 4.469 16 H 0.091 0.909 17 C 0.035 3.965 18 N -0.800 5.800 19 Si 0.991 3.009 20 H -0.258 1.258 21 H -0.262 1.262 22 H -0.254 1.254 23 C -0.257 4.257 24 C -0.001 4.001 25 C 0.123 3.877 26 C -0.131 4.131 27 H 0.051 0.949 28 H 0.091 0.909 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.087 0.913 33 H 0.051 0.949 34 H 0.093 0.907 35 H 0.102 0.898 36 H 0.086 0.914 37 H 0.113 0.887 38 H 0.109 0.891 39 H 0.298 0.702 40 H 0.110 0.890 41 H 0.124 0.876 42 H 0.104 0.896 43 H 0.085 0.915 44 H 0.095 0.905 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.664 -16.075 -6.221 18.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.027 4.027 3 O -0.328 6.328 4 C 0.040 3.960 5 C -0.193 4.193 6 C -0.003 4.003 7 N -0.837 5.837 8 S 2.815 3.185 9 O -0.987 6.987 10 O -0.990 6.990 11 C -0.888 4.888 12 C -0.040 4.040 13 C -0.227 4.227 14 C 0.108 3.892 15 C -0.496 4.496 16 H 0.109 0.891 17 C -0.185 4.185 18 N -0.423 5.423 19 Si 0.810 3.190 20 H -0.183 1.183 21 H -0.187 1.187 22 H -0.178 1.178 23 C -0.278 4.278 24 C -0.021 4.021 25 C -0.002 4.002 26 C -0.170 4.170 27 H 0.070 0.930 28 H 0.109 0.891 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.105 0.895 33 H 0.070 0.930 34 H 0.112 0.888 35 H 0.120 0.880 36 H 0.104 0.896 37 H 0.131 0.869 38 H 0.127 0.873 39 H 0.109 0.891 40 H 0.128 0.872 41 H 0.142 0.858 42 H 0.122 0.878 43 H 0.104 0.896 44 H 0.114 0.886 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.736 -15.757 -6.425 17.663 hybrid contribution -0.900 1.216 0.616 1.634 sum -5.636 -14.540 -5.809 16.641 Atomic orbital electron populations 1.21773 0.93553 1.03202 1.02324 1.22695 0.95922 0.83084 1.00985 1.87950 1.21624 1.28029 1.95159 1.22011 0.80627 0.98365 0.94996 1.22402 0.95515 1.03188 0.98203 1.21563 0.94432 0.88593 0.95731 1.57718 1.67043 1.36645 1.22250 1.00567 0.73444 0.72399 0.72042 1.93445 1.70596 1.76743 1.57935 1.93448 1.74587 1.77279 1.53689 1.29763 1.33214 1.19725 1.06138 1.20421 0.93464 0.92320 0.97752 1.21340 1.05226 1.00528 0.95591 1.18191 0.87752 0.91413 0.91796 1.20220 1.22010 0.94717 1.12643 0.89075 1.27026 0.98230 1.00564 0.92639 1.69863 1.29464 1.19987 1.22954 0.85048 0.77547 0.77095 0.79291 1.18269 1.18653 1.17755 1.21251 1.07327 0.99886 0.99288 1.20418 0.92586 0.96666 0.92422 1.21559 0.93151 1.04274 0.81205 1.21975 0.95403 0.97631 1.02006 0.93026 0.89059 0.92487 0.92582 0.91997 0.89490 0.93033 0.88809 0.87995 0.89580 0.86870 0.87290 0.89068 0.87190 0.85799 0.87826 0.89646 0.88644 0.93122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 10.28 71.98 0.74 -1.52 16 2 C 0.05 0.80 6.47 71.98 0.47 1.27 16 3 O -0.41 -9.64 9.99 -148.98 -1.49 -11.13 16 4 C 0.10 2.05 2.57 30.62 0.08 2.13 16 5 C -0.15 -3.45 5.69 30.67 0.17 -3.28 16 6 C 0.12 2.80 6.38 86.36 0.55 3.35 16 7 N -1.00 -28.42 3.29 -513.07 -1.69 -30.11 16 8 S 2.72 103.47 5.68 -56.49 -0.32 103.15 16 9 O -1.00 -40.77 15.97 -128.00 -2.04 -42.82 16 10 O -1.00 -42.04 15.97 -128.00 -2.04 -44.08 16 11 C -0.80 -35.61 6.00 22.46 0.13 -35.48 16 12 C -0.02 -0.94 9.49 22.22 0.21 -0.73 16 13 C -0.21 -10.88 8.70 22.73 0.20 -10.69 16 14 C 0.11 5.96 5.57 -21.29 -0.12 5.84 16 15 C -0.47 -24.04 9.05 23.46 0.21 -23.83 16 16 H 0.09 4.40 7.91 -2.91 -0.02 4.38 16 17 C 0.03 1.64 5.14 85.26 0.44 2.08 16 18 N -0.80 -39.86 10.97 21.83 0.24 -39.62 16 19 Si 0.99 35.36 29.60 68.60 2.03 37.39 16 20 H -0.26 -8.83 7.11 99.48 0.71 -8.13 16 21 H -0.26 -8.90 7.11 99.48 0.71 -8.19 16 22 H -0.25 -8.88 7.11 99.48 0.71 -8.17 16 23 C -0.26 -12.62 9.80 22.73 0.22 -12.39 16 24 C 0.00 -0.05 9.49 22.22 0.21 0.16 16 25 C 0.12 2.93 6.38 86.36 0.55 3.48 16 26 C -0.13 -3.09 5.73 30.67 0.18 -2.91 16 27 H 0.05 0.88 8.14 -2.38 -0.02 0.87 16 28 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 30 H 0.06 0.80 7.84 -2.39 -0.02 0.78 16 31 H 0.06 0.80 8.08 -2.39 -0.02 0.78 16 32 H 0.09 1.35 7.79 -2.39 -0.02 1.33 16 33 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.09 1.66 7.84 -2.39 -0.02 1.64 16 35 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.09 2.13 7.12 -2.39 -0.02 2.11 16 37 H 0.11 5.02 7.59 -2.92 -0.02 5.00 16 38 H 0.11 5.88 6.18 -2.91 -0.02 5.86 16 39 H 0.30 13.20 8.30 -92.71 -0.77 12.43 16 40 H 0.11 4.97 8.06 -2.91 -0.02 4.94 16 41 H 0.12 4.94 7.60 -2.91 -0.02 4.92 16 42 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.09 2.24 7.13 -2.39 -0.02 2.22 16 44 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 45 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 Total: -1.00 -66.84 376.09 -0.09 -66.93 By element: Atomic # 1 Polarization: 31.83 SS G_CDS: 0.98 Total: 32.81 kcal Atomic # 6 Polarization: -76.76 SS G_CDS: 4.25 Total: -72.52 kcal Atomic # 7 Polarization: -68.28 SS G_CDS: -1.45 Total: -69.73 kcal Atomic # 8 Polarization: -92.45 SS G_CDS: -5.58 Total: -98.03 kcal Atomic # 14 Polarization: 35.36 SS G_CDS: 2.03 Total: 37.39 kcal Atomic # 16 Polarization: 103.47 SS G_CDS: -0.32 Total: 103.15 kcal Total: -66.84 -0.09 -66.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092131314.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.961 kcal (2) G-P(sol) polarization free energy of solvation -66.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds