Wall clock time and date at job start Sat Apr 11 2020 05:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46495 * 120.00151 * 2 1 4 4 C 1.53005 * 109.47037 * 274.99429 * 3 2 1 5 5 H 1.08994 * 109.47744 * 60.00208 * 4 3 2 6 6 C 1.53088 * 109.47805 * 180.02562 * 4 3 2 7 7 C 1.53175 * 109.16093 * 177.58561 * 6 4 3 8 8 C 1.53181 * 109.04361 * 303.03209 * 7 6 4 9 9 C 1.53093 * 109.16130 * 56.97793 * 8 7 6 10 10 O 1.42897 * 109.48153 * 299.97960 * 4 3 2 11 11 S 1.65607 * 119.99770 * 179.97438 * 2 1 3 12 12 O 1.42104 * 106.40050 * 156.46414 * 11 2 1 13 13 O 1.42097 * 106.40225 * 23.54364 * 11 2 1 14 14 C 1.76194 * 107.21760 * 270.00271 * 11 2 1 15 15 C 1.38636 * 119.75246 * 90.00305 * 14 11 2 16 16 C 1.37611 * 120.25448 * 180.02562 * 15 14 11 17 17 C 1.40719 * 119.74369 * 359.97438 * 16 15 14 18 18 C 1.41392 * 120.24595 * 179.97438 * 17 16 15 19 19 H 1.08006 * 119.99580 * 25.14957 * 18 17 16 20 20 C 1.39945 * 120.00395 * 205.13922 * 18 17 16 21 21 N 1.30823 * 119.99974 * 17.43692 * 20 18 17 22 22 Si 1.86803 * 120.00106 * 197.43490 * 20 18 17 23 23 H 1.48506 * 109.46768 * 265.18076 * 22 20 18 24 24 H 1.48503 * 109.47148 * 145.18591 * 22 20 18 25 25 H 1.48494 * 109.47408 * 25.18381 * 22 20 18 26 26 C 1.40715 * 119.51201 * 0.27880 * 17 16 15 27 27 C 1.37619 * 119.74233 * 359.44299 * 26 17 16 28 28 H 1.08994 * 109.47487 * 269.99767 * 1 2 3 29 29 H 1.09003 * 109.46556 * 30.00565 * 1 2 3 30 30 H 1.09003 * 109.47023 * 149.99852 * 1 2 3 31 31 H 1.09001 * 109.47364 * 34.99538 * 3 2 1 32 32 H 1.09004 * 109.47211 * 154.99555 * 3 2 1 33 33 H 1.09010 * 109.52592 * 297.49597 * 6 4 3 34 34 H 1.08992 * 109.52768 * 57.68755 * 6 4 3 35 35 H 1.09006 * 109.54875 * 183.16663 * 7 6 4 36 36 H 1.08995 * 109.61547 * 62.94562 * 7 6 4 37 37 H 1.08996 * 109.52538 * 297.06928 * 8 7 6 38 38 H 1.09002 * 109.57504 * 176.91338 * 8 7 6 39 39 H 1.08996 * 109.48298 * 182.40865 * 9 8 7 40 40 H 1.09005 * 109.48968 * 62.37942 * 9 8 7 41 41 H 1.08001 * 119.87226 * 359.97438 * 15 14 11 42 42 H 1.08002 * 120.13388 * 179.97438 * 16 15 14 43 43 H 0.96991 * 120.00555 * 179.97438 * 21 20 18 44 44 H 1.07994 * 120.13332 * 179.72615 * 26 17 16 45 45 H 1.08003 * 119.88191 * 180.27755 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3438 1.7731 -1.4371 5 1 1.3556 1.9242 -1.8715 6 6 3.1098 3.0986 -1.4373 7 6 3.3046 3.5663 -2.8828 8 6 4.0350 2.4725 -3.6680 9 6 3.2330 1.1713 -3.5815 10 8 3.0618 0.8091 -2.2098 11 16 2.2930 -1.4342 0.0006 12 8 3.5760 -1.1571 -0.5438 13 8 1.4113 -2.4068 -0.5434 14 6 2.5537 -1.8852 1.6838 15 6 1.6131 -2.6631 2.3413 16 6 1.8060 -3.0209 3.6560 17 6 2.9636 -2.5945 4.3329 18 6 3.1723 -2.9555 5.6839 19 1 2.7083 -3.8454 6.0829 20 6 3.9802 -2.1598 6.5041 21 7 4.2623 -0.9320 6.1513 22 14 4.6558 -2.8508 8.1028 23 1 3.7555 -2.4771 9.2231 24 1 6.0102 -2.2941 8.3494 25 1 4.7387 -4.3303 8.0067 26 6 3.9090 -1.8008 3.6573 27 6 3.6981 -1.4598 2.3408 28 1 -0.3634 0.0000 1.0276 29 1 -0.3632 0.8900 -0.5139 30 1 -0.3633 -0.8900 -0.5139 31 1 1.6502 2.0043 0.5894 32 1 3.1858 1.1176 0.4344 33 1 2.5419 3.8477 -0.8854 34 1 4.0824 2.9574 -0.9661 35 1 3.8981 4.4806 -2.8935 36 1 2.3336 3.7567 -3.3399 37 1 5.0263 2.3183 -3.2419 38 1 4.1298 2.7733 -4.7114 39 1 3.7693 0.3783 -4.1026 40 1 2.2565 1.3145 -4.0443 41 1 0.7252 -2.9889 1.8198 42 1 1.0718 -3.6266 4.1664 43 1 4.8219 -0.3804 6.7199 44 1 4.7988 -1.4643 4.1684 45 1 4.4243 -0.8545 1.8187 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092131424.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:03 Heat of formation + Delta-G solvation = -114.258189 kcal Electronic energy + Delta-G solvation = -28162.509057 eV Core-core repulsion = 24271.104784 eV Total energy + Delta-G solvation = -3891.404273 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -39.40800 -37.51764 -36.32478 -35.88484 -34.87151 -33.98885 -33.58559 -31.61400 -30.19619 -29.41830 -27.60821 -25.76964 -25.31788 -23.82376 -22.02052 -21.41045 -21.06327 -20.28980 -18.23195 -17.58137 -17.09154 -16.58725 -16.20127 -15.90877 -15.55167 -15.30798 -14.72215 -14.52230 -14.12851 -14.06676 -13.70629 -13.37301 -13.13933 -13.05925 -12.73160 -12.51224 -12.35067 -12.30584 -12.12986 -11.86353 -11.73032 -11.35433 -11.29810 -11.24157 -11.18382 -11.09103 -11.01140 -10.91876 -10.84400 -10.78014 -10.36001 -10.28860 -9.69753 -9.51620 -9.46008 -9.34657 -8.56404 -7.89387 -7.65300 -7.10328 -4.75602 1.37109 2.31549 2.89675 2.91456 2.96518 2.98348 3.66207 3.69276 3.92194 4.30081 4.61982 4.72965 4.76771 4.79101 4.93289 5.07761 5.20054 5.23191 5.28384 5.39071 5.46353 5.54243 5.61704 5.64652 5.69933 5.77163 5.82136 5.90397 5.95533 6.00462 6.05203 6.11513 6.16854 6.18864 6.37345 6.71470 6.72932 6.87712 7.07868 7.11541 7.38932 7.41644 7.47434 7.68753 7.81402 8.01504 8.36431 8.55708 8.69828 9.81354 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018396 B = 0.003113 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.688728 B = 8991.544960 C = 9736.917047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -1.003 6.003 3 C 0.137 3.863 4 C 0.068 3.932 5 H 0.057 0.943 6 C -0.150 4.150 7 C -0.119 4.119 8 C -0.157 4.157 9 C 0.058 3.942 10 O -0.351 6.351 11 S 2.694 3.306 12 O -0.957 6.957 13 O -0.989 6.989 14 C -0.789 4.789 15 C 0.000 4.000 16 C -0.239 4.239 17 C 0.139 3.861 18 C -0.438 4.438 19 H 0.087 0.913 20 C 0.073 3.927 21 N -0.769 5.769 22 Si 0.916 3.084 23 H -0.267 1.267 24 H -0.271 1.271 25 H -0.257 1.257 26 C -0.183 4.183 27 C -0.016 4.016 28 H 0.053 0.947 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.092 0.908 40 H 0.043 0.957 41 H 0.103 0.897 42 H 0.099 0.901 43 H 0.288 0.712 44 H 0.122 0.878 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.059 9.724 -10.617 14.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.837 5.837 3 C 0.011 3.989 4 C 0.008 3.992 5 H 0.074 0.926 6 C -0.189 4.189 7 C -0.157 4.157 8 C -0.194 4.194 9 C -0.019 4.019 10 O -0.269 6.269 11 S 2.792 3.208 12 O -0.947 6.947 13 O -0.980 6.980 14 C -0.884 4.884 15 C -0.021 4.021 16 C -0.260 4.260 17 C 0.136 3.864 18 C -0.466 4.466 19 H 0.105 0.895 20 C -0.149 4.149 21 N -0.391 5.391 22 Si 0.739 3.261 23 H -0.192 1.192 24 H -0.196 1.196 25 H -0.180 1.180 26 C -0.203 4.203 27 C -0.036 4.036 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.097 0.903 31 H 0.107 0.893 32 H 0.109 0.891 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.110 0.890 40 H 0.062 0.938 41 H 0.121 0.879 42 H 0.117 0.883 43 H 0.099 0.901 44 H 0.140 0.860 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.645 9.349 -11.240 14.858 hybrid contribution 0.095 0.310 1.414 1.450 sum -2.550 9.659 -9.827 14.013 Atomic orbital electron populations 1.21458 0.79463 1.03115 1.01724 1.57601 1.14449 1.21359 1.90290 1.21214 0.97708 0.86203 0.93824 1.22626 0.94320 0.88683 0.93525 0.92556 1.22166 1.02155 0.97252 0.97309 1.21550 1.00483 0.98224 0.95442 1.22197 1.00616 0.96141 1.00477 1.22550 0.98535 0.96675 0.84182 1.88247 1.75902 1.43029 1.19714 1.01445 0.72750 0.71702 0.74881 1.93525 1.39340 1.84028 1.77834 1.93440 1.67185 1.58615 1.78731 1.29461 1.08614 1.25507 1.24837 1.20172 0.95132 0.92711 0.94036 1.21058 0.99406 1.10240 0.95286 1.17844 0.88890 0.87204 0.92476 1.19914 1.23654 1.08258 0.94740 0.89523 1.26114 0.93952 0.93998 1.00824 1.69815 1.26188 1.06124 1.36995 0.86162 0.78908 0.80834 0.80210 1.19174 1.19611 1.18030 1.21330 1.00872 1.05058 0.93058 1.20267 0.93527 0.95291 0.94500 0.92849 0.91755 0.90317 0.89347 0.89136 0.90891 0.90459 0.91641 0.92123 0.90824 0.91342 0.88979 0.93845 0.87941 0.88257 0.90100 0.86035 0.87913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.18 10.68 59.85 0.64 1.82 16 2 N -1.00 -16.32 3.07 -121.76 -0.37 -16.69 16 3 C 0.14 1.92 5.11 -4.04 -0.02 1.90 16 4 C 0.07 0.88 2.91 -26.68 -0.08 0.80 16 5 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 6 C -0.15 -1.55 5.42 -26.59 -0.14 -1.70 16 7 C -0.12 -1.08 6.03 -26.55 -0.16 -1.24 16 8 C -0.16 -1.54 6.14 -26.59 -0.16 -1.71 16 9 C 0.06 0.70 6.84 37.21 0.25 0.95 16 10 O -0.35 -5.52 8.31 -54.61 -0.45 -5.98 16 11 S 2.69 55.30 5.53 -107.50 -0.59 54.71 16 12 O -0.96 -21.25 14.41 -65.34 -0.94 -22.19 16 13 O -0.99 -22.02 15.86 -57.17 -0.91 -22.93 16 14 C -0.79 -18.06 6.00 -39.29 -0.24 -18.29 16 15 C 0.00 -0.01 9.49 -39.66 -0.38 -0.39 16 16 C -0.24 -5.79 9.80 -38.87 -0.38 -6.18 16 17 C 0.14 3.60 5.57 -106.82 -0.60 3.00 16 18 C -0.44 -10.91 9.05 -37.74 -0.34 -11.25 16 19 H 0.09 2.04 7.90 -52.48 -0.41 1.63 16 20 C 0.07 1.69 5.15 -17.34 -0.09 1.60 16 21 N -0.77 -18.37 10.96 55.55 0.61 -17.76 16 22 Si 0.92 17.20 29.59 -169.99 -5.03 12.17 16 23 H -0.27 -4.92 7.11 56.52 0.40 -4.52 16 24 H -0.27 -4.99 7.11 56.52 0.40 -4.58 16 25 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 26 C -0.18 -4.66 8.69 -38.87 -0.34 -5.00 16 27 C -0.02 -0.37 9.49 -39.66 -0.38 -0.75 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.67 8.07 -51.93 -0.42 0.25 16 30 H 0.08 1.10 7.02 -51.93 -0.36 0.74 16 31 H 0.09 0.99 8.11 -51.93 -0.42 0.57 16 32 H 0.09 1.39 7.61 -51.93 -0.40 0.99 16 33 H 0.07 0.62 8.14 -51.92 -0.42 0.19 16 34 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.10 2.14 7.60 -52.49 -0.40 1.74 16 42 H 0.10 2.21 8.06 -52.49 -0.42 1.78 16 43 H 0.29 6.16 8.30 -40.82 -0.34 5.82 16 44 H 0.12 3.12 6.17 -52.49 -0.32 2.80 16 45 H 0.10 2.26 7.60 -52.48 -0.40 1.86 16 LS Contribution 373.27 15.07 5.63 5.63 Total: -1.00 -30.95 373.27 -11.39 -42.34 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -6.92 Total: 7.12 kcal Atomic # 6 Polarization: -34.00 SS G_CDS: -2.41 Total: -36.41 kcal Atomic # 7 Polarization: -34.69 SS G_CDS: 0.24 Total: -34.45 kcal Atomic # 8 Polarization: -48.80 SS G_CDS: -2.30 Total: -51.10 kcal Atomic # 14 Polarization: 17.20 SS G_CDS: -5.03 Total: 12.17 kcal Atomic # 16 Polarization: 55.30 SS G_CDS: -0.59 Total: 54.71 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.95 -11.39 -42.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092131424.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.919 kcal (2) G-P(sol) polarization free energy of solvation -30.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds