Wall clock time and date at job start Sat Apr 11 2020 05:39:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46495 * 120.00151 * 2 1 4 4 C 1.53005 * 109.47037 * 274.99429 * 3 2 1 5 5 H 1.08994 * 109.47744 * 60.00208 * 4 3 2 6 6 C 1.53088 * 109.47805 * 180.02562 * 4 3 2 7 7 C 1.53175 * 109.16093 * 177.58561 * 6 4 3 8 8 C 1.53181 * 109.04361 * 303.03209 * 7 6 4 9 9 C 1.53093 * 109.16130 * 56.97793 * 8 7 6 10 10 O 1.42897 * 109.48153 * 299.97960 * 4 3 2 11 11 S 1.65607 * 119.99770 * 179.97438 * 2 1 3 12 12 O 1.42104 * 106.40050 * 156.46414 * 11 2 1 13 13 O 1.42097 * 106.40225 * 23.54364 * 11 2 1 14 14 C 1.76194 * 107.21760 * 270.00271 * 11 2 1 15 15 C 1.38636 * 119.75246 * 90.00305 * 14 11 2 16 16 C 1.37611 * 120.25448 * 180.02562 * 15 14 11 17 17 C 1.40719 * 119.74369 * 359.97438 * 16 15 14 18 18 C 1.41392 * 120.24595 * 179.97438 * 17 16 15 19 19 H 1.08006 * 119.99580 * 25.14957 * 18 17 16 20 20 C 1.39945 * 120.00395 * 205.13922 * 18 17 16 21 21 N 1.30823 * 119.99974 * 17.43692 * 20 18 17 22 22 Si 1.86803 * 120.00106 * 197.43490 * 20 18 17 23 23 H 1.48506 * 109.46768 * 265.18076 * 22 20 18 24 24 H 1.48503 * 109.47148 * 145.18591 * 22 20 18 25 25 H 1.48494 * 109.47408 * 25.18381 * 22 20 18 26 26 C 1.40715 * 119.51201 * 0.27880 * 17 16 15 27 27 C 1.37619 * 119.74233 * 359.44299 * 26 17 16 28 28 H 1.08994 * 109.47487 * 269.99767 * 1 2 3 29 29 H 1.09003 * 109.46556 * 30.00565 * 1 2 3 30 30 H 1.09003 * 109.47023 * 149.99852 * 1 2 3 31 31 H 1.09001 * 109.47364 * 34.99538 * 3 2 1 32 32 H 1.09004 * 109.47211 * 154.99555 * 3 2 1 33 33 H 1.09010 * 109.52592 * 297.49597 * 6 4 3 34 34 H 1.08992 * 109.52768 * 57.68755 * 6 4 3 35 35 H 1.09006 * 109.54875 * 183.16663 * 7 6 4 36 36 H 1.08995 * 109.61547 * 62.94562 * 7 6 4 37 37 H 1.08996 * 109.52538 * 297.06928 * 8 7 6 38 38 H 1.09002 * 109.57504 * 176.91338 * 8 7 6 39 39 H 1.08996 * 109.48298 * 182.40865 * 9 8 7 40 40 H 1.09005 * 109.48968 * 62.37942 * 9 8 7 41 41 H 1.08001 * 119.87226 * 359.97438 * 15 14 11 42 42 H 1.08002 * 120.13388 * 179.97438 * 16 15 14 43 43 H 0.96991 * 120.00555 * 179.97438 * 21 20 18 44 44 H 1.07994 * 120.13332 * 179.72615 * 26 17 16 45 45 H 1.08003 * 119.88191 * 180.27755 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3438 1.7731 -1.4371 5 1 1.3556 1.9242 -1.8715 6 6 3.1098 3.0986 -1.4373 7 6 3.3046 3.5663 -2.8828 8 6 4.0350 2.4725 -3.6680 9 6 3.2330 1.1713 -3.5815 10 8 3.0618 0.8091 -2.2098 11 16 2.2930 -1.4342 0.0006 12 8 3.5760 -1.1571 -0.5438 13 8 1.4113 -2.4068 -0.5434 14 6 2.5537 -1.8852 1.6838 15 6 1.6131 -2.6631 2.3413 16 6 1.8060 -3.0209 3.6560 17 6 2.9636 -2.5945 4.3329 18 6 3.1723 -2.9555 5.6839 19 1 2.7083 -3.8454 6.0829 20 6 3.9802 -2.1598 6.5041 21 7 4.2623 -0.9320 6.1513 22 14 4.6558 -2.8508 8.1028 23 1 3.7555 -2.4771 9.2231 24 1 6.0102 -2.2941 8.3494 25 1 4.7387 -4.3303 8.0067 26 6 3.9090 -1.8008 3.6573 27 6 3.6981 -1.4598 2.3408 28 1 -0.3634 0.0000 1.0276 29 1 -0.3632 0.8900 -0.5139 30 1 -0.3633 -0.8900 -0.5139 31 1 1.6502 2.0043 0.5894 32 1 3.1858 1.1176 0.4344 33 1 2.5419 3.8477 -0.8854 34 1 4.0824 2.9574 -0.9661 35 1 3.8981 4.4806 -2.8935 36 1 2.3336 3.7567 -3.3399 37 1 5.0263 2.3183 -3.2419 38 1 4.1298 2.7733 -4.7114 39 1 3.7693 0.3783 -4.1026 40 1 2.2565 1.3145 -4.0443 41 1 0.7252 -2.9889 1.8198 42 1 1.0718 -3.6266 4.1664 43 1 4.8219 -0.3804 6.7199 44 1 4.7988 -1.4643 4.1684 45 1 4.4243 -0.8545 1.8187 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092131424.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:02 Heat of formation + Delta-G solvation = -132.336756 kcal Electronic energy + Delta-G solvation = -28163.293002 eV Core-core repulsion = 24271.104784 eV Total energy + Delta-G solvation = -3892.188218 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.34996 -39.37558 -38.03618 -37.06603 -36.59004 -35.79254 -34.45280 -32.56870 -32.05122 -31.29559 -28.60642 -27.60488 -26.37862 -24.73943 -23.25438 -23.09216 -22.86684 -21.11571 -19.76182 -19.42466 -18.60042 -18.15327 -17.36223 -17.19400 -16.90593 -16.65535 -15.86887 -15.72450 -15.57693 -15.31283 -15.00786 -14.97557 -14.66316 -14.14624 -14.07107 -13.95517 -13.83740 -13.55335 -13.45726 -13.26172 -13.09739 -12.97560 -12.89906 -12.79083 -12.58135 -12.52824 -12.33551 -12.12760 -11.98808 -11.86369 -11.67784 -11.54923 -11.28181 -11.21566 -11.17696 -10.28520 -9.86513 -9.72683 -9.55583 -8.86460 -6.64235 -0.23471 0.49800 1.04671 1.35775 1.42247 1.52584 2.11737 2.23503 2.54278 2.93354 3.11157 3.51513 3.61956 3.83607 3.95893 4.00547 4.02819 4.10248 4.29245 4.31058 4.32159 4.37181 4.49742 4.58747 4.71154 4.73890 4.84375 4.86089 4.90180 4.94572 4.97937 4.99239 5.08241 5.10003 5.16008 5.22309 5.24429 5.24499 5.46532 5.52194 5.58797 5.71843 5.82920 5.93817 6.15335 6.48693 6.49025 6.68390 6.81072 8.08978 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018396 B = 0.003113 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.688728 B = 8991.544960 C = 9736.917047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.997 5.997 3 C 0.127 3.873 4 C 0.065 3.935 5 H 0.075 0.925 6 C -0.148 4.148 7 C -0.117 4.117 8 C -0.153 4.153 9 C 0.048 3.952 10 O -0.392 6.392 11 S 2.717 3.283 12 O -0.977 6.977 13 O -1.007 7.007 14 C -0.801 4.801 15 C -0.005 4.005 16 C -0.257 4.257 17 C 0.111 3.889 18 C -0.468 4.468 19 H 0.091 0.909 20 C 0.035 3.965 21 N -0.796 5.796 22 Si 0.991 3.009 23 H -0.257 1.257 24 H -0.263 1.263 25 H -0.257 1.257 26 C -0.206 4.206 27 C -0.020 4.020 28 H 0.060 0.940 29 H 0.103 0.897 30 H 0.070 0.930 31 H 0.122 0.878 32 H 0.070 0.930 33 H 0.096 0.904 34 H 0.061 0.939 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.057 0.943 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.059 0.941 41 H 0.123 0.877 42 H 0.112 0.888 43 H 0.298 0.702 44 H 0.111 0.889 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.009 11.388 -10.853 16.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.835 5.835 3 C 0.001 3.999 4 C 0.006 3.994 5 H 0.092 0.908 6 C -0.187 4.187 7 C -0.154 4.154 8 C -0.191 4.191 9 C -0.029 4.029 10 O -0.311 6.311 11 S 2.813 3.187 12 O -0.967 6.967 13 O -0.998 6.998 14 C -0.893 4.893 15 C -0.025 4.025 16 C -0.277 4.277 17 C 0.107 3.893 18 C -0.495 4.495 19 H 0.109 0.891 20 C -0.185 4.185 21 N -0.419 5.419 22 Si 0.810 3.190 23 H -0.181 1.181 24 H -0.187 1.187 25 H -0.180 1.180 26 C -0.226 4.226 27 C -0.040 4.040 28 H 0.078 0.922 29 H 0.121 0.879 30 H 0.089 0.911 31 H 0.140 0.860 32 H 0.088 0.912 33 H 0.115 0.885 34 H 0.079 0.921 35 H 0.098 0.902 36 H 0.093 0.907 37 H 0.076 0.924 38 H 0.108 0.892 39 H 0.103 0.897 40 H 0.077 0.923 41 H 0.141 0.859 42 H 0.130 0.870 43 H 0.110 0.890 44 H 0.129 0.871 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -3.596 11.008 -11.462 16.294 hybrid contribution 0.338 -0.133 1.369 1.416 sum -3.258 10.875 -10.093 15.190 Atomic orbital electron populations 1.21735 0.77342 1.04694 1.02747 1.57249 1.15727 1.20612 1.89889 1.21544 0.97019 0.85705 0.95609 1.22747 0.95344 0.89116 0.92207 0.90766 1.22163 1.01346 0.96554 0.98606 1.21566 1.01362 0.98193 0.94289 1.22167 0.99512 0.95503 1.01921 1.22737 0.99689 0.97619 0.82808 1.88185 1.76640 1.44843 1.21459 1.00697 0.72326 0.72243 0.73472 1.93495 1.40979 1.84580 1.77676 1.93407 1.67462 1.60335 1.78576 1.29940 1.08061 1.25082 1.26189 1.20450 0.95856 0.92297 0.93856 1.21295 0.99483 1.10873 0.96081 1.18194 0.89622 0.87976 0.93466 1.20209 1.25265 1.09016 0.94971 0.89098 1.26999 0.93436 0.93897 1.04130 1.69840 1.26330 1.07193 1.38552 0.85048 0.78455 0.79808 0.75668 1.18101 1.18687 1.18049 1.21343 1.00970 1.06430 0.93896 1.20431 0.94192 0.95213 0.94169 0.92152 0.87883 0.91082 0.86000 0.91191 0.88522 0.92062 0.90190 0.90665 0.92401 0.89203 0.89687 0.92321 0.85922 0.86984 0.89047 0.87109 0.87003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.94 10.68 127.77 1.36 3.30 16 2 N -1.00 -31.09 3.07 -539.12 -1.65 -32.74 16 3 C 0.13 3.36 5.11 86.38 0.44 3.80 16 4 C 0.07 1.54 2.91 30.63 0.09 1.63 16 5 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 6 C -0.15 -2.72 5.42 30.68 0.17 -2.55 16 7 C -0.12 -1.77 6.03 30.71 0.19 -1.59 16 8 C -0.15 -2.76 6.14 30.69 0.19 -2.58 16 9 C 0.05 1.11 6.84 72.01 0.49 1.60 16 10 O -0.39 -12.07 8.31 -130.45 -1.08 -13.15 16 11 S 2.72 111.42 5.53 -56.49 -0.31 111.11 16 12 O -0.98 -44.02 14.41 -120.19 -1.73 -45.76 16 13 O -1.01 -44.56 15.86 -128.00 -2.03 -46.59 16 14 C -0.80 -37.14 6.00 22.46 0.13 -37.01 16 15 C 0.00 -0.23 9.49 22.22 0.21 -0.02 16 16 C -0.26 -12.70 9.80 22.73 0.22 -12.48 16 17 C 0.11 5.91 5.57 -21.29 -0.12 5.79 16 18 C -0.47 -23.82 9.05 23.46 0.21 -23.60 16 19 H 0.09 4.37 7.90 -2.91 -0.02 4.35 16 20 C 0.03 1.62 5.15 85.26 0.44 2.06 16 21 N -0.80 -38.62 10.96 21.83 0.24 -38.38 16 22 Si 0.99 34.92 29.59 68.60 2.03 36.95 16 23 H -0.26 -8.59 7.11 99.48 0.71 -7.89 16 24 H -0.26 -8.81 7.11 99.48 0.71 -8.10 16 25 H -0.26 -8.98 7.11 99.48 0.71 -8.28 16 26 C -0.21 -10.91 8.69 22.73 0.20 -10.71 16 27 C -0.02 -0.99 9.49 22.22 0.21 -0.78 16 28 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.10 1.73 8.07 -2.39 -0.02 1.71 16 30 H 0.07 1.86 7.02 -2.39 -0.02 1.84 16 31 H 0.12 2.37 8.11 -2.39 -0.02 2.35 16 32 H 0.07 2.14 7.61 -2.38 -0.02 2.13 16 33 H 0.10 1.30 8.14 -2.38 -0.02 1.28 16 34 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 36 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 41 H 0.12 5.08 7.60 -2.91 -0.02 5.06 16 42 H 0.11 5.06 8.06 -2.91 -0.02 5.04 16 43 H 0.30 12.80 8.30 -92.71 -0.77 12.03 16 44 H 0.11 5.96 6.17 -2.91 -0.02 5.94 16 45 H 0.11 5.12 7.60 -2.91 -0.02 5.10 16 Total: -1.00 -68.49 373.27 0.87 -67.62 By element: Atomic # 1 Polarization: 33.10 SS G_CDS: 0.98 Total: 34.07 kcal Atomic # 6 Polarization: -77.57 SS G_CDS: 4.44 Total: -73.13 kcal Atomic # 7 Polarization: -69.71 SS G_CDS: -1.41 Total: -71.12 kcal Atomic # 8 Polarization: -100.65 SS G_CDS: -4.85 Total: -105.50 kcal Atomic # 14 Polarization: 34.92 SS G_CDS: 2.03 Total: 36.95 kcal Atomic # 16 Polarization: 111.42 SS G_CDS: -0.31 Total: 111.11 kcal Total: -68.49 0.87 -67.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092131424.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.718 kcal (2) G-P(sol) polarization free energy of solvation -68.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds