Wall clock time and date at job start Sat Apr 11 2020 05:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42902 * 114.00299 * 2 1 4 4 C 1.52990 * 109.47484 * 179.97438 * 3 2 1 5 5 C 1.53041 * 109.46435 * 174.99787 * 4 3 2 6 6 C 1.53189 * 109.31571 * 181.37121 * 5 4 3 7 7 N 1.46928 * 108.77459 * 305.36721 * 6 5 4 8 8 S 1.65604 * 120.62760 * 233.58624 * 7 6 5 9 9 O 1.42099 * 106.40194 * 336.45813 * 8 7 6 10 10 O 1.42101 * 106.40000 * 203.53919 * 8 7 6 11 11 C 1.76204 * 107.21820 * 89.99981 * 8 7 6 12 12 C 1.38628 * 119.74879 * 90.00179 * 11 8 7 13 13 C 1.37621 * 120.25017 * 179.97438 * 12 11 8 14 14 C 1.40711 * 119.74189 * 359.97438 * 13 12 11 15 15 C 1.41398 * 120.24397 * 180.02562 * 14 13 12 16 16 H 1.08002 * 119.99630 * 335.08421 * 15 14 13 17 17 C 1.39943 * 120.00161 * 155.36018 * 15 14 13 18 18 N 1.30826 * 120.00072 * 341.83072 * 17 15 14 19 19 Si 1.86807 * 120.00001 * 161.82285 * 17 15 14 20 20 H 1.48495 * 109.46894 * 94.53330 * 19 17 15 21 21 H 1.48502 * 109.46836 * 214.52986 * 19 17 15 22 22 H 1.48491 * 109.47097 * 334.53351 * 19 17 15 23 23 C 1.40716 * 119.51471 * 0.27190 * 14 13 12 24 24 C 1.37626 * 119.74005 * 359.47643 * 23 14 13 25 25 C 1.46926 * 118.74229 * 53.85861 * 7 6 5 26 26 C 1.53047 * 109.45049 * 295.06086 * 4 3 2 27 27 H 1.09007 * 109.47394 * 300.00075 * 1 2 3 28 28 H 1.08999 * 109.47230 * 60.00198 * 1 2 3 29 29 H 1.09000 * 109.47355 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46801 * 59.99689 * 3 2 1 31 31 H 1.09004 * 109.46955 * 300.00208 * 3 2 1 32 32 H 1.09006 * 109.46356 * 55.02205 * 4 3 2 33 33 H 1.09003 * 109.49365 * 61.42053 * 5 4 3 34 34 H 1.09000 * 109.51960 * 301.34369 * 5 4 3 35 35 H 1.09002 * 109.58622 * 185.58253 * 6 5 4 36 36 H 1.08992 * 109.70222 * 65.22389 * 6 5 4 37 37 H 1.08007 * 119.88040 * 0.02562 * 12 11 8 38 38 H 1.07997 * 120.12852 * 179.97438 * 13 12 11 39 39 H 0.96998 * 120.00159 * 179.97438 * 18 17 15 40 40 H 1.08002 * 120.12837 * 179.69890 * 23 14 13 41 41 H 1.08001 * 119.86959 * 180.27144 * 24 23 14 42 42 H 1.09000 * 109.58342 * 65.92752 * 25 7 6 43 43 H 1.08999 * 109.58527 * 186.35112 * 25 7 6 44 44 H 1.09001 * 109.49290 * 298.57248 * 26 4 3 45 45 H 1.08999 * 109.49417 * 58.66659 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1573 2.5773 -0.1252 6 6 5.6835 2.4496 -0.1587 7 7 6.1212 1.6980 1.0255 8 16 7.2719 2.3195 2.0414 9 8 8.0222 3.2519 1.2753 10 8 7.8592 1.2107 2.7085 11 6 6.4290 3.2531 3.2753 12 6 6.0215 2.6347 4.4472 13 6 5.3629 3.3542 5.4180 14 6 5.1040 4.7227 5.2177 15 6 4.4285 5.4722 6.2083 16 1 3.7698 4.9757 6.9054 17 6 4.6091 6.8580 6.2818 18 7 5.6392 7.4152 5.6987 19 14 3.3792 7.9122 7.2121 20 1 3.8589 8.1227 8.6016 21 1 3.2388 9.2251 6.5327 22 1 2.0623 7.2267 7.2417 23 6 5.5176 5.3387 4.0221 24 6 6.1794 4.6008 3.0673 25 6 5.5230 0.3819 1.2879 26 6 3.9946 0.5353 1.3082 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.8513 0.5685 -0.8412 33 1 3.8618 3.1862 0.7293 34 1 3.8113 3.0490 -1.0449 35 1 6.1336 3.4423 -0.1483 36 1 5.9882 1.9197 -1.0610 37 1 6.2224 1.5844 4.5993 38 1 5.0459 2.8703 6.3300 39 1 5.7642 8.3758 5.7493 40 1 5.3197 6.3874 3.8559 41 1 6.5016 5.0725 2.1507 42 1 5.8127 -0.3145 0.5011 43 1 5.8672 0.0100 2.2529 44 1 3.7007 1.1634 2.1491 45 1 3.5329 -0.4470 1.4083 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092132300.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:06 Heat of formation + Delta-G solvation = -137.036498 kcal Electronic energy + Delta-G solvation = -28085.241561 eV Core-core repulsion = 24192.849547 eV Total energy + Delta-G solvation = -3892.392014 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -39.94244 -39.37630 -38.25076 -38.21255 -36.79119 -35.80251 -34.05508 -32.07064 -31.97357 -31.29183 -28.62097 -27.61595 -26.61660 -24.27210 -23.54698 -23.21059 -22.92197 -21.18960 -19.78432 -19.42628 -18.76620 -18.15727 -17.30036 -17.16768 -16.91261 -16.66236 -16.08232 -15.84784 -15.65506 -15.29209 -15.13530 -14.98824 -14.66391 -14.42982 -14.21060 -14.09439 -13.98006 -13.55301 -13.48970 -13.12698 -13.05481 -12.98055 -12.87735 -12.81324 -12.64982 -12.56719 -12.35313 -12.11709 -12.04419 -11.74679 -11.55130 -11.41856 -11.38915 -11.20243 -11.18494 -10.54495 -9.92835 -9.73152 -9.55003 -8.87601 -6.64912 -0.34087 0.49308 1.05104 1.34860 1.40903 1.51891 2.10302 2.17749 2.53215 2.85920 2.95610 3.48794 3.51294 3.74992 3.82485 4.05108 4.20704 4.25093 4.29485 4.31861 4.45000 4.48462 4.52580 4.54585 4.63248 4.69829 4.85264 4.86392 4.87249 4.88339 4.91505 4.93127 5.01675 5.05949 5.14372 5.24011 5.25498 5.37225 5.51924 5.52476 5.59046 5.72359 5.82033 5.93186 6.15502 6.28283 6.48667 6.68194 6.80846 8.08148 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010023 B = 0.003947 C = 0.003152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2792.915833 B = 7093.156619 C = 8880.341967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.409 6.409 3 C 0.066 3.934 4 C -0.076 4.076 5 C -0.126 4.126 6 C 0.118 3.882 7 N -0.997 5.997 8 S 2.716 3.284 9 O -1.001 7.001 10 O -1.000 7.000 11 C -0.793 4.793 12 C -0.001 4.001 13 C -0.256 4.256 14 C 0.113 3.887 15 C -0.469 4.469 16 H 0.091 0.909 17 C 0.036 3.964 18 N -0.800 5.800 19 Si 0.991 3.009 20 H -0.260 1.260 21 H -0.262 1.262 22 H -0.253 1.253 23 C -0.205 4.205 24 C -0.018 4.018 25 C 0.119 3.881 26 C -0.123 4.123 27 H 0.040 0.960 28 H 0.051 0.949 29 H 0.096 0.904 30 H 0.040 0.960 31 H 0.064 0.936 32 H 0.092 0.908 33 H 0.054 0.946 34 H 0.100 0.900 35 H 0.081 0.919 36 H 0.095 0.905 37 H 0.122 0.878 38 H 0.109 0.891 39 H 0.298 0.702 40 H 0.109 0.891 41 H 0.114 0.886 42 H 0.093 0.907 43 H 0.080 0.920 44 H 0.050 0.950 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.538 -8.078 -11.368 16.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.329 6.329 3 C -0.011 4.011 4 C -0.095 4.095 5 C -0.165 4.165 6 C -0.006 4.006 7 N -0.836 5.836 8 S 2.813 3.187 9 O -0.992 6.992 10 O -0.991 6.991 11 C -0.886 4.886 12 C -0.021 4.021 13 C -0.277 4.277 14 C 0.110 3.890 15 C -0.496 4.496 16 H 0.109 0.891 17 C -0.184 4.184 18 N -0.423 5.423 19 Si 0.810 3.190 20 H -0.184 1.184 21 H -0.187 1.187 22 H -0.177 1.177 23 C -0.226 4.226 24 C -0.038 4.038 25 C -0.006 4.006 26 C -0.162 4.162 27 H 0.059 0.941 28 H 0.069 0.931 29 H 0.115 0.885 30 H 0.059 0.941 31 H 0.082 0.918 32 H 0.110 0.890 33 H 0.073 0.927 34 H 0.118 0.882 35 H 0.100 0.900 36 H 0.114 0.886 37 H 0.140 0.860 38 H 0.128 0.872 39 H 0.109 0.891 40 H 0.127 0.873 41 H 0.132 0.868 42 H 0.111 0.889 43 H 0.099 0.901 44 H 0.069 0.931 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.356 -8.169 -11.518 16.408 hybrid contribution -0.972 1.279 1.147 1.974 sum -9.329 -6.890 -10.371 15.558 Atomic orbital electron populations 1.22882 0.79990 1.03640 1.00498 1.87820 1.20941 1.28558 1.95532 1.22613 0.93573 0.84382 1.00503 1.21021 0.92708 0.96949 0.98772 1.21891 0.94616 0.96569 1.03409 1.21574 0.95125 0.96557 0.87379 1.57665 1.59650 1.28251 1.37995 1.00597 0.73383 0.72134 0.72549 1.93443 1.69571 1.64863 1.71304 1.93440 1.75972 1.53584 1.76082 1.29722 1.34001 1.07461 1.17412 1.20409 0.92048 0.98060 0.91580 1.21243 1.10054 0.95698 1.00683 1.18176 0.86967 0.92191 0.91707 1.20213 1.23042 0.93146 1.13188 0.89075 1.27012 0.96410 0.99539 0.95410 1.69865 1.24400 1.14567 1.33436 0.85058 0.78440 0.77128 0.78419 1.18423 1.18659 1.17675 1.21317 1.06718 0.99802 0.94719 1.20413 0.93616 0.92089 0.97701 1.21663 0.93447 0.82745 1.02714 1.21949 0.94651 1.01934 0.97626 0.94123 0.93077 0.88531 0.94122 0.91794 0.89012 0.92692 0.88187 0.90013 0.88647 0.86018 0.87243 0.89071 0.87288 0.86834 0.88921 0.90133 0.93142 0.89544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 113.37 1.25 1.63 16 2 O -0.41 -8.45 10.21 -148.98 -1.52 -9.97 16 3 C 0.07 1.27 5.32 71.98 0.38 1.65 16 4 C -0.08 -1.51 2.39 -10.77 -0.03 -1.53 16 5 C -0.13 -2.61 5.36 30.67 0.16 -2.45 16 6 C 0.12 2.82 6.38 86.36 0.55 3.37 16 7 N -1.00 -29.06 3.28 -512.30 -1.68 -30.74 16 8 S 2.72 104.74 5.69 -56.49 -0.32 104.42 16 9 O -1.00 -42.56 15.97 -128.00 -2.04 -44.60 16 10 O -1.00 -42.00 15.96 -128.00 -2.04 -44.04 16 11 C -0.79 -35.16 6.00 22.46 0.13 -35.02 16 12 C 0.00 -0.05 9.49 22.22 0.21 0.16 16 13 C -0.26 -12.40 9.80 22.73 0.22 -12.18 16 14 C 0.11 5.90 5.57 -21.29 -0.12 5.78 16 15 C -0.47 -23.57 9.05 23.46 0.21 -23.36 16 16 H 0.09 4.31 7.91 -2.91 -0.02 4.29 16 17 C 0.04 1.65 5.13 85.26 0.44 2.09 16 18 N -0.80 -39.23 11.01 21.83 0.24 -38.99 16 19 Si 0.99 34.58 29.60 68.60 2.03 36.61 16 20 H -0.26 -8.76 7.11 99.48 0.71 -8.05 16 21 H -0.26 -8.70 7.11 99.48 0.71 -8.00 16 22 H -0.25 -8.61 7.11 99.48 0.71 -7.91 16 23 C -0.21 -10.56 8.69 22.73 0.20 -10.37 16 24 C -0.02 -0.86 9.49 22.22 0.21 -0.65 16 25 C 0.12 2.96 6.41 86.51 0.55 3.51 16 26 C -0.12 -2.84 5.29 30.82 0.16 -2.68 16 27 H 0.04 0.60 8.14 -2.38 -0.02 0.58 16 28 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 32 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 33 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.08 2.12 7.13 -2.39 -0.02 2.10 16 36 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.12 4.89 7.60 -2.91 -0.02 4.87 16 38 H 0.11 4.89 8.06 -2.91 -0.02 4.86 16 39 H 0.30 12.99 8.30 -92.71 -0.77 12.22 16 40 H 0.11 5.73 6.21 -2.91 -0.02 5.71 16 41 H 0.11 4.93 7.60 -2.91 -0.02 4.90 16 42 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.08 2.16 7.12 -2.39 -0.02 2.14 16 44 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 45 H 0.09 1.86 7.79 -2.39 -0.02 1.84 16 Total: -1.00 -64.98 375.66 0.18 -64.80 By element: Atomic # 1 Polarization: 31.58 SS G_CDS: 0.98 Total: 32.56 kcal Atomic # 6 Polarization: -74.59 SS G_CDS: 4.55 Total: -70.04 kcal Atomic # 7 Polarization: -68.29 SS G_CDS: -1.44 Total: -69.73 kcal Atomic # 8 Polarization: -93.00 SS G_CDS: -5.61 Total: -98.61 kcal Atomic # 14 Polarization: 34.58 SS G_CDS: 2.03 Total: 36.61 kcal Atomic # 16 Polarization: 104.74 SS G_CDS: -0.32 Total: 104.42 kcal Total: -64.98 0.18 -64.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092132300.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.237 kcal (2) G-P(sol) polarization free energy of solvation -64.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds