Wall clock time and date at job start Sat Apr 11 2020 05:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35903 * 116.99931 * 2 1 4 4 C 1.38738 * 120.05355 * 179.97438 * 3 2 1 5 5 C 1.38146 * 119.93932 * 180.02562 * 4 3 2 6 6 C 1.38260 * 120.05554 * 0.02562 * 5 4 3 7 7 C 1.50701 * 119.94107 * 179.97438 * 6 5 4 8 8 H 1.09002 * 110.00002 * 341.09862 * 7 6 5 9 9 C 1.54326 * 109.88228 * 102.19546 * 7 6 5 10 10 C 1.55161 * 102.94452 * 141.60981 * 9 7 6 11 11 C 1.55129 * 101.48340 * 324.33672 * 10 9 7 12 12 N 1.47023 * 109.88500 * 220.00513 * 7 6 5 13 13 S 1.65594 * 125.64907 * 61.60495 * 12 7 6 14 14 O 1.42102 * 104.27534 * 333.93114 * 13 12 7 15 15 O 1.42108 * 104.27870 * 206.07558 * 13 12 7 16 16 C 1.81391 * 104.45143 * 90.00271 * 13 12 7 17 17 C 1.53004 * 109.47414 * 179.97438 * 16 13 12 18 18 C 1.50700 * 109.47208 * 179.97438 * 17 16 13 19 19 H 1.08002 * 119.99770 * 0.02562 * 18 17 16 20 20 C 1.37871 * 120.00083 * 180.02562 * 18 17 16 21 21 N 1.31514 * 120.00147 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00278 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46986 * 270.00126 * 22 20 18 24 24 H 1.48496 * 109.47029 * 30.00143 * 22 20 18 25 25 H 1.48499 * 109.47352 * 149.99973 * 22 20 18 26 26 C 1.38261 * 120.11764 * 0.25896 * 6 5 4 27 27 C 1.38149 * 120.05182 * 359.44670 * 26 6 5 28 28 H 1.08997 * 109.47081 * 299.99896 * 1 2 3 29 29 H 1.08997 * 109.47111 * 59.99795 * 1 2 3 30 30 H 1.09004 * 109.46798 * 180.02562 * 1 2 3 31 31 H 1.07994 * 120.03100 * 0.04838 * 4 3 2 32 32 H 1.08003 * 119.97058 * 180.02562 * 5 4 3 33 33 H 1.09003 * 110.72064 * 259.97453 * 9 7 6 34 34 H 1.08997 * 110.72174 * 23.24694 * 9 7 6 35 35 H 1.09002 * 111.00111 * 82.57290 * 10 9 7 36 36 H 1.08996 * 111.00726 * 206.38591 * 10 9 7 37 37 H 1.09003 * 110.49334 * 278.44981 * 11 10 9 38 38 H 1.09003 * 110.34325 * 156.06081 * 11 10 9 39 39 H 1.09000 * 109.47478 * 59.99882 * 16 13 12 40 40 H 1.08998 * 109.47401 * 300.00003 * 16 13 12 41 41 H 1.08994 * 109.47074 * 60.00211 * 17 16 13 42 42 H 1.08998 * 109.47285 * 300.00046 * 17 16 13 43 43 H 0.97005 * 119.99661 * 359.97438 * 21 20 18 44 44 H 1.07997 * 119.97567 * 179.70486 * 26 6 5 45 45 H 1.08001 * 120.02994 * 180.25377 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4313 1.2848 0.0005 5 6 4.0560 2.5170 0.0011 6 6 3.3018 3.6757 0.0016 7 6 3.9860 5.0185 0.0028 8 1 5.0186 4.9105 0.3349 9 6 3.9516 5.6263 -1.4153 10 6 3.7077 7.1340 -1.1415 11 6 2.7675 7.0758 0.0911 12 7 3.2691 5.9443 0.8920 13 16 3.0544 5.7453 2.5218 14 8 3.1206 4.3390 2.7149 15 8 1.8659 6.4692 2.8098 16 6 4.4924 6.5589 3.2705 17 6 4.4086 6.4425 4.7938 18 6 5.6037 7.1179 5.4157 19 1 6.3482 7.5840 4.7873 20 6 5.7465 7.1409 6.7868 21 7 4.8401 6.5729 7.5520 22 14 7.2274 7.9787 7.5578 23 1 8.3299 6.9952 7.7082 24 1 7.6748 9.0942 6.6855 25 1 6.8549 8.5128 8.8924 26 6 1.9211 3.6048 0.0070 27 6 1.2915 2.3751 0.0003 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 4.0209 0.3800 0.0002 32 1 5.1345 2.5751 0.0011 33 1 4.9045 5.4757 -1.9227 34 1 3.1328 5.2026 -1.9968 35 1 4.6409 7.6434 -0.9015 36 1 3.2118 7.6096 -1.9876 37 1 1.7393 6.8931 -0.2215 38 1 2.8325 8.0025 0.6613 39 1 4.5030 7.6113 2.9869 40 1 5.4056 6.0788 2.9187 41 1 4.3980 5.3902 5.0777 42 1 3.4956 6.9229 5.1452 43 1 4.0709 6.1382 7.1516 44 1 1.3342 4.5114 0.0122 45 1 0.2129 2.3201 0.0004 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104107680.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:20 Heat of formation + Delta-G solvation = -88.070110 kcal Electronic energy + Delta-G solvation = -28014.898643 eV Core-core repulsion = 24124.629971 eV Total energy + Delta-G solvation = -3890.268672 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.32507 -38.99764 -36.96955 -36.55887 -35.46569 -34.24845 -31.37285 -31.13374 -31.02477 -30.88043 -28.20091 -26.86960 -25.06987 -23.21168 -22.60315 -21.90941 -21.56742 -20.87180 -18.61832 -18.17679 -17.62565 -16.89508 -16.68183 -15.86462 -15.81672 -15.72077 -15.47630 -14.90977 -14.36072 -13.96089 -13.84403 -13.77722 -13.57765 -13.45642 -13.30002 -13.05342 -12.81155 -12.53809 -12.46430 -12.09274 -12.00071 -11.66670 -11.59278 -11.55794 -11.40899 -11.23117 -11.03151 -10.97416 -10.83694 -10.75945 -10.53059 -10.49156 -10.30506 -10.09794 -9.10793 -8.94126 -8.62113 -8.45830 -8.04188 -6.47720 -4.20448 0.65835 1.39470 1.43719 2.98410 3.19386 3.38189 3.41841 3.57634 3.75569 4.22097 4.25562 4.46173 4.48044 4.61838 4.73561 4.80661 4.86388 4.91764 4.96424 5.00605 5.15688 5.27935 5.28024 5.34016 5.35577 5.44213 5.52264 5.54513 5.58289 5.62660 5.68279 5.70397 5.73391 5.98336 6.01960 6.12473 6.24915 6.34073 6.36653 6.43563 6.69902 6.75681 6.96505 7.06904 7.34912 7.96509 8.30035 8.72622 9.52057 10.92092 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013381 B = 0.003330 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.017995 B = 8405.306450 C = 9419.828940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.320 6.320 3 C 0.124 3.876 4 C -0.148 4.148 5 C -0.063 4.063 6 C -0.121 4.121 7 C 0.196 3.804 8 H 0.083 0.917 9 C -0.118 4.118 10 C -0.131 4.131 11 C 0.120 3.880 12 N -1.012 6.012 13 S 2.599 3.401 14 O -0.946 6.946 15 O -0.964 6.964 16 C -0.585 4.585 17 C 0.016 3.984 18 C -0.600 4.600 19 H 0.055 0.945 20 C 0.016 3.984 21 N -0.906 5.906 22 Si 1.076 2.924 23 H -0.286 1.286 24 H -0.288 1.288 25 H -0.282 1.282 26 C -0.060 4.060 27 C -0.205 4.205 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.098 0.902 31 H 0.129 0.871 32 H 0.129 0.871 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.067 0.933 38 H 0.076 0.924 39 H 0.118 0.882 40 H 0.120 0.880 41 H 0.024 0.976 42 H 0.023 0.977 43 H 0.270 0.730 44 H 0.119 0.881 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.694 -5.669 -22.669 23.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.234 6.234 3 C 0.079 3.921 4 C -0.167 4.167 5 C -0.081 4.081 6 C -0.122 4.122 7 C 0.089 3.911 8 H 0.101 0.899 9 C -0.157 4.157 10 C -0.170 4.170 11 C -0.005 4.005 12 N -0.848 5.848 13 S 2.698 3.302 14 O -0.937 6.937 15 O -0.955 6.955 16 C -0.717 4.717 17 C -0.023 4.023 18 C -0.639 4.639 19 H 0.073 0.927 20 C -0.189 4.189 21 N -0.541 5.541 22 Si 0.903 3.097 23 H -0.212 1.212 24 H -0.214 1.214 25 H -0.207 1.207 26 C -0.079 4.079 27 C -0.224 4.224 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.116 0.884 31 H 0.147 0.853 32 H 0.147 0.853 33 H 0.100 0.900 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.085 0.915 38 H 0.094 0.906 39 H 0.137 0.863 40 H 0.138 0.862 41 H 0.042 0.958 42 H 0.041 0.959 43 H 0.081 0.919 44 H 0.137 0.863 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -4.687 -5.960 -20.745 22.088 hybrid contribution -0.479 0.121 -1.415 1.499 sum -5.166 -5.838 -22.160 23.491 Atomic orbital electron populations 1.23029 0.78635 1.03691 1.01394 1.86042 1.21228 1.27185 1.88931 1.19001 0.92420 0.83923 0.96784 1.20320 0.91272 0.98475 1.06642 1.20710 0.99622 0.90876 0.96942 1.19938 0.93948 0.94733 1.03618 1.20096 0.94613 0.85734 0.90613 0.89924 1.22697 1.03018 0.95160 0.94820 1.22856 1.00219 0.96316 0.97633 1.21996 0.97520 0.88779 0.92191 1.59043 1.69759 1.31537 1.24451 1.05531 0.77477 0.75406 0.71772 1.93591 1.87604 1.28840 1.83640 1.93540 1.44009 1.75128 1.82785 1.30391 1.17934 1.12586 1.10838 1.19060 0.99745 0.98228 0.85314 1.21863 1.07897 1.40018 0.94124 0.92651 1.25983 1.02508 0.96365 0.94058 1.70752 1.11243 1.33444 1.38648 0.83446 0.74388 0.75965 0.75857 1.21223 1.21369 1.20742 1.20653 0.94053 0.96843 0.96331 1.21142 0.99772 0.92380 1.09081 0.92572 0.92819 0.88408 0.85309 0.85319 0.89971 0.90383 0.90332 0.90056 0.91512 0.90554 0.86330 0.86200 0.95787 0.95929 0.91917 0.86287 0.85762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.32 -4.04 10.50 -19.44 -0.20 -4.24 16 3 C 0.12 1.70 6.69 -39.22 -0.26 1.43 16 4 C -0.15 -1.96 9.99 -39.43 -0.39 -2.35 16 5 C -0.06 -0.81 9.67 -39.61 -0.38 -1.19 16 6 C -0.12 -1.62 3.30 -104.60 -0.35 -1.96 16 7 C 0.20 2.31 3.25 -68.10 -0.22 2.08 16 8 H 0.08 0.90 8.02 -51.93 -0.42 0.48 16 9 C -0.12 -0.98 6.45 -24.89 -0.16 -1.14 16 10 C -0.13 -1.03 7.10 -24.46 -0.17 -1.21 16 11 C 0.12 1.31 6.90 -2.41 -0.02 1.30 16 12 N -1.01 -13.95 2.58 -105.50 -0.27 -14.22 16 13 S 2.60 48.48 5.61 -107.50 -0.60 47.88 16 14 O -0.95 -19.91 15.81 -57.54 -0.91 -20.82 16 15 O -0.96 -20.50 17.60 -57.54 -1.01 -21.51 16 16 C -0.58 -11.68 6.12 37.16 0.23 -11.46 16 17 C 0.02 0.41 4.29 -27.88 -0.12 0.29 16 18 C -0.60 -17.05 9.11 -34.44 -0.31 -17.37 16 19 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 20 C 0.02 0.45 5.46 -17.82 -0.10 0.36 16 21 N -0.91 -28.00 13.65 55.43 0.76 -27.24 16 22 Si 1.08 25.09 29.90 -169.99 -5.08 20.01 16 23 H -0.29 -6.39 7.11 56.52 0.40 -5.98 16 24 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 C -0.06 -0.84 8.76 -39.61 -0.35 -1.19 16 27 C -0.21 -2.75 9.04 -39.43 -0.36 -3.10 16 28 H 0.06 0.49 7.66 -51.93 -0.40 0.09 16 29 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 30 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 32 H 0.13 1.32 8.04 -52.48 -0.42 0.90 16 33 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.08 0.63 7.77 -51.93 -0.40 0.23 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.12 2.16 8.14 -51.92 -0.42 1.74 16 40 H 0.12 2.18 8.14 -51.92 -0.42 1.76 16 41 H 0.02 0.65 8.01 -51.93 -0.42 0.24 16 42 H 0.02 0.61 8.01 -51.93 -0.42 0.20 16 43 H 0.27 8.37 7.22 -40.82 -0.29 8.07 16 44 H 0.12 1.58 7.72 -52.49 -0.41 1.18 16 45 H 0.12 1.38 6.30 -52.49 -0.33 1.05 16 LS Contribution 380.24 15.07 5.73 5.73 Total: -1.00 -36.98 380.24 -10.48 -47.45 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -6.91 Total: 1.26 kcal Atomic # 6 Polarization: -32.31 SS G_CDS: -1.97 Total: -34.28 kcal Atomic # 7 Polarization: -41.95 SS G_CDS: 0.48 Total: -41.46 kcal Atomic # 8 Polarization: -44.45 SS G_CDS: -2.13 Total: -46.57 kcal Atomic # 14 Polarization: 25.09 SS G_CDS: -5.08 Total: 20.01 kcal Atomic # 16 Polarization: 48.48 SS G_CDS: -0.60 Total: 47.88 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -36.98 -10.48 -47.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104107680.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.617 kcal (2) G-P(sol) polarization free energy of solvation -36.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds