Wall clock time and date at job start Sat Apr 11 2020 05:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.35901 * 116.99705 * 2 1 4 4 C 1.38728 * 120.04858 * 180.02562 * 3 2 1 5 5 C 1.38149 * 119.94189 * 180.02562 * 4 3 2 6 6 C 1.38268 * 120.05478 * 0.02562 * 5 4 3 7 7 C 1.50705 * 119.94473 * 179.97438 * 6 5 4 8 8 H 1.08993 * 109.46792 * 340.00195 * 7 6 5 9 9 N 1.46499 * 109.47082 * 219.99747 * 7 6 5 10 10 S 1.65606 * 119.99677 * 96.15370 * 9 7 6 11 11 O 1.42101 * 104.27681 * 179.35389 * 10 9 7 12 12 O 1.42101 * 104.27647 * 307.21295 * 10 9 7 13 13 C 1.81404 * 104.44642 * 63.28388 * 10 9 7 14 14 C 1.53001 * 109.47035 * 175.18784 * 13 10 9 15 15 C 1.50696 * 109.47334 * 180.02562 * 14 13 10 16 16 H 1.08004 * 119.99824 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00340 * 180.02562 * 15 14 13 18 18 N 1.31520 * 119.99659 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00233 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47269 * 59.99890 * 19 17 15 21 21 H 1.48502 * 109.47157 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.46818 * 299.99883 * 19 17 15 23 23 C 1.52999 * 109.46650 * 100.00055 * 7 6 5 24 24 C 1.53001 * 117.49384 * 185.23393 * 23 7 6 25 25 C 1.52996 * 59.99939 * 107.49091 * 24 23 7 26 26 C 1.38266 * 120.10982 * 0.25329 * 6 5 4 27 27 C 1.38145 * 120.05605 * 359.45370 * 26 6 5 28 28 H 1.09000 * 109.46946 * 300.00027 * 1 2 3 29 29 H 1.09003 * 109.47069 * 59.99939 * 1 2 3 30 30 H 1.08997 * 109.47476 * 180.02562 * 1 2 3 31 31 H 1.07994 * 120.03607 * 359.97438 * 4 3 2 32 32 H 1.07999 * 119.97609 * 179.97438 * 5 4 3 33 33 H 0.96998 * 120.00179 * 276.16114 * 9 7 6 34 34 H 1.08998 * 109.47029 * 295.18893 * 13 10 9 35 35 H 1.08995 * 109.47050 * 55.18966 * 13 10 9 36 36 H 1.09001 * 109.47158 * 300.00455 * 14 13 10 37 37 H 1.09001 * 109.46865 * 59.99755 * 14 13 10 38 38 H 0.97000 * 119.99529 * 180.02562 * 18 17 15 39 39 H 1.08996 * 115.56531 * 39.54769 * 23 7 6 40 40 H 1.09001 * 117.49947 * 0.02562 * 24 23 7 41 41 H 1.09002 * 117.50033 * 214.98004 * 24 23 7 42 42 H 1.08997 * 117.50375 * 107.48948 * 25 24 23 43 43 H 1.09006 * 117.50080 * 252.48803 * 25 24 23 44 44 H 1.08000 * 119.96773 * 179.70410 * 26 6 5 45 45 H 1.07997 * 120.02861 * 180.25253 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2848 -0.0005 5 6 4.0561 2.5169 0.0000 6 6 3.3020 3.6758 0.0016 7 6 3.9862 5.0186 0.0028 8 1 5.0116 4.9034 0.3536 9 7 3.2655 5.9331 0.8919 10 16 3.7761 6.1440 2.4531 11 8 2.8660 7.0916 2.9944 12 8 3.8581 4.8253 2.9761 13 6 5.4310 6.8697 2.2938 14 6 5.9676 7.2255 3.6818 15 6 7.3421 7.8289 3.5496 16 1 7.7885 7.9466 2.5732 17 6 8.0302 8.2300 4.6750 18 7 7.4867 8.0862 5.8640 19 14 9.7337 8.9787 4.5110 20 1 9.6565 10.2076 3.6809 21 1 10.2550 9.3227 5.8583 22 1 10.6441 8.0003 3.8635 23 6 3.9938 5.5882 -1.4172 24 6 4.7544 6.8952 -1.6499 25 6 5.3222 5.5756 -2.1763 26 6 1.9212 3.6047 0.0080 27 6 1.2916 2.3751 0.0013 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 4.0209 0.3800 -0.0005 32 1 5.1346 2.5750 0.0000 33 1 2.4892 6.4149 0.5662 34 1 6.0989 6.1508 1.8194 35 1 5.3752 7.7713 1.6839 36 1 5.2996 7.9444 4.1563 37 1 6.0233 6.3239 4.2918 38 1 7.9707 8.3687 6.6558 39 1 3.0831 5.4263 -1.9938 40 1 5.2496 7.3490 -0.7915 41 1 4.3441 7.5932 -2.3796 42 1 5.2854 5.4054 -3.2522 43 1 6.1909 5.1616 -1.6643 44 1 1.3344 4.5114 0.0140 45 1 0.2130 2.3202 0.0022 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111326352.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:09 Heat of formation + Delta-G solvation = -68.219287 kcal Electronic energy + Delta-G solvation = -27472.937937 eV Core-core repulsion = 23583.530061 eV Total energy + Delta-G solvation = -3889.407876 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 7.66 seconds Orbital eigenvalues (eV) -40.33496 -38.79728 -36.97327 -36.52572 -35.40540 -34.18330 -33.89893 -31.19669 -31.11080 -30.41003 -27.70053 -25.74986 -25.61288 -22.92804 -22.41606 -21.78486 -21.67027 -20.55002 -18.86674 -18.31861 -17.42760 -16.70462 -16.67416 -16.18196 -15.95991 -15.89332 -15.34824 -14.87068 -14.71965 -14.55784 -14.43567 -13.98618 -13.62184 -13.44759 -13.17120 -12.80557 -12.54431 -12.34370 -12.14966 -11.97992 -11.77456 -11.63440 -11.58477 -11.55587 -11.46134 -11.08060 -11.00504 -10.96132 -10.85376 -10.59144 -10.41471 -10.37794 -10.30156 -9.81937 -9.54896 -9.07527 -9.02389 -8.50458 -8.16085 -6.12667 -4.18470 0.78275 1.31012 1.35315 3.05740 3.11782 3.26692 3.31717 3.33267 3.67900 3.74198 4.24133 4.37480 4.40168 4.64452 4.69994 4.75258 4.77934 4.84199 4.89355 4.91773 4.97915 5.01195 5.21379 5.22433 5.26667 5.33444 5.34971 5.52987 5.57501 5.64117 5.66659 5.77654 5.85980 5.95962 6.00097 6.05651 6.19152 6.28208 6.47146 6.61527 6.67719 7.09414 7.26733 7.29297 7.35859 7.79792 8.16792 8.84629 9.46259 10.98364 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014799 B = 0.002983 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.550923 B = 9383.984211 C = 9938.515701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.320 6.320 3 C 0.123 3.877 4 C -0.149 4.149 5 C -0.063 4.063 6 C -0.121 4.121 7 C 0.230 3.770 8 H 0.092 0.908 9 N -1.118 6.118 10 S 2.587 3.413 11 O -0.967 6.967 12 O -0.959 6.959 13 C -0.591 4.591 14 C 0.029 3.971 15 C -0.521 4.521 16 H 0.061 0.939 17 C 0.058 3.942 18 N -0.890 5.890 19 Si 0.900 3.100 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.275 1.275 23 C -0.158 4.158 24 C -0.174 4.174 25 C -0.171 4.171 26 C -0.061 4.061 27 C -0.209 4.209 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.098 0.902 31 H 0.130 0.870 32 H 0.131 0.869 33 H 0.413 0.587 34 H 0.117 0.883 35 H 0.121 0.879 36 H 0.034 0.966 37 H 0.032 0.968 38 H 0.266 0.734 39 H 0.110 0.890 40 H 0.101 0.899 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.098 0.902 44 H 0.123 0.877 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.403 -10.799 -18.271 24.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.234 6.234 3 C 0.078 3.922 4 C -0.168 4.168 5 C -0.082 4.082 6 C -0.123 4.123 7 C 0.123 3.877 8 H 0.110 0.890 9 N -0.872 5.872 10 S 2.685 3.315 11 O -0.957 6.957 12 O -0.949 6.949 13 C -0.724 4.724 14 C -0.010 4.010 15 C -0.560 4.560 16 H 0.079 0.921 17 C -0.145 4.145 18 N -0.528 5.528 19 Si 0.727 3.273 20 H -0.201 1.201 21 H -0.211 1.211 22 H -0.201 1.201 23 C -0.177 4.177 24 C -0.211 4.211 25 C -0.209 4.209 26 C -0.079 4.079 27 C -0.228 4.228 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.116 0.884 31 H 0.148 0.852 32 H 0.149 0.851 33 H 0.246 0.754 34 H 0.135 0.865 35 H 0.139 0.861 36 H 0.053 0.947 37 H 0.050 0.950 38 H 0.075 0.925 39 H 0.128 0.872 40 H 0.119 0.881 41 H 0.114 0.886 42 H 0.114 0.886 43 H 0.117 0.883 44 H 0.141 0.859 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -11.684 -11.300 -17.215 23.676 hybrid contribution 0.759 0.976 -0.527 1.344 sum -10.925 -10.324 -17.741 23.253 Atomic orbital electron populations 1.23032 0.78595 1.03740 1.01361 1.86056 1.21244 1.27164 1.88887 1.19028 0.92422 0.83996 0.96774 1.20360 0.91294 0.98574 1.06569 1.20806 0.99941 0.90861 0.96563 1.19986 0.93998 0.94758 1.03581 1.19019 0.94673 0.85311 0.88745 0.88969 1.55938 1.42439 1.56818 1.32048 1.05749 0.78183 0.75100 0.72518 1.93555 1.61778 1.64325 1.76032 1.93573 1.87456 1.37222 1.76656 1.30480 1.19333 1.11745 1.10876 1.18943 0.97957 0.98190 0.85871 1.20952 1.00258 1.41584 0.93204 0.92093 1.25068 0.98453 0.95703 0.95243 1.69948 1.38190 1.46801 0.97885 0.86535 0.83791 0.79640 0.77337 1.20074 1.21077 1.20070 1.22487 0.97149 1.02193 0.95921 1.23006 1.03646 0.90714 1.03730 1.23002 0.96322 1.01406 1.00186 1.20661 0.93961 0.96878 0.96405 1.21168 0.99830 0.92370 1.09435 0.92607 0.92778 0.88401 0.85183 0.85110 0.75383 0.86466 0.86061 0.94732 0.94992 0.92458 0.87236 0.88054 0.88564 0.88594 0.88309 0.85941 0.85665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.32 -3.61 10.50 -19.43 -0.20 -3.82 16 3 C 0.12 1.50 6.69 -39.22 -0.26 1.24 16 4 C -0.15 -1.80 9.99 -39.43 -0.39 -2.20 16 5 C -0.06 -0.76 9.66 -39.60 -0.38 -1.14 16 6 C -0.12 -1.49 4.96 -104.60 -0.52 -2.01 16 7 C 0.23 2.63 2.45 -69.08 -0.17 2.46 16 8 H 0.09 1.04 6.79 -51.93 -0.35 0.69 16 9 N -1.12 -14.17 4.61 -5.88 -0.03 -14.20 16 10 S 2.59 46.14 5.38 -107.50 -0.58 45.56 16 11 O -0.97 -20.19 18.08 -57.54 -1.04 -21.23 16 12 O -0.96 -19.98 17.85 -57.54 -1.03 -21.01 16 13 C -0.59 -11.06 5.81 37.16 0.22 -10.84 16 14 C 0.03 0.75 4.98 -27.88 -0.14 0.61 16 15 C -0.52 -14.23 9.11 -34.44 -0.31 -14.54 16 16 H 0.06 1.56 7.74 -52.48 -0.41 1.16 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.89 -26.44 13.29 55.43 0.74 -25.71 16 19 Si 0.90 21.08 29.54 -169.99 -5.02 16.05 16 20 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 21 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 22 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 23 C -0.16 -1.43 5.22 -90.62 -0.47 -1.91 16 24 C -0.17 -1.56 10.21 -26.73 -0.27 -1.83 16 25 C -0.17 -1.43 10.18 -26.73 -0.27 -1.71 16 26 C -0.06 -0.72 9.32 -39.61 -0.37 -1.09 16 27 C -0.21 -2.39 9.04 -39.43 -0.36 -2.75 16 28 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16 29 H 0.05 0.33 7.66 -51.93 -0.40 -0.07 16 30 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 32 H 0.13 1.31 8.03 -52.49 -0.42 0.89 16 33 H 0.41 4.31 8.56 -34.48 -0.30 4.02 16 34 H 0.12 1.94 7.51 -51.92 -0.39 1.55 16 35 H 0.12 2.01 8.14 -51.93 -0.42 1.58 16 36 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.03 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 39 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 41 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.10 0.82 8.08 -51.93 -0.42 0.40 16 44 H 0.12 1.24 7.51 -52.49 -0.39 0.85 16 45 H 0.13 1.13 6.30 -52.49 -0.33 0.80 16 LS Contribution 390.79 15.07 5.89 5.89 Total: -1.00 -36.06 390.79 -10.83 -46.89 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -6.75 Total: 4.55 kcal Atomic # 6 Polarization: -30.16 SS G_CDS: -2.81 Total: -32.97 kcal Atomic # 7 Polarization: -40.62 SS G_CDS: 0.71 Total: -39.91 kcal Atomic # 8 Polarization: -43.79 SS G_CDS: -2.27 Total: -46.06 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: 46.14 SS G_CDS: -0.58 Total: 45.56 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -36.06 -10.83 -46.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111326352.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.330 kcal (2) G-P(sol) polarization free energy of solvation -36.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.66 seconds