Wall clock time and date at job start Sat Apr 11 2020 05:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.46768 * 2 1 4 4 C 1.53002 * 109.46989 * 240.00290 * 2 1 3 5 5 S 1.81395 * 109.46907 * 180.02562 * 4 2 1 6 6 C 1.81406 * 102.99875 * 179.97438 * 5 4 2 7 7 O 1.42104 * 109.47278 * 63.61145 * 5 4 2 8 8 N 1.46494 * 109.47184 * 120.00297 * 2 1 3 9 9 C 1.46495 * 120.00216 * 59.99625 * 8 2 1 10 10 C 1.34784 * 119.99952 * 239.99913 * 8 2 1 11 11 O 1.21279 * 119.99740 * 0.02562 * 10 8 2 12 12 C 1.50705 * 119.99914 * 179.97438 * 10 8 2 13 13 C 1.50697 * 109.46688 * 180.02562 * 12 10 8 14 14 C 1.38300 * 119.92778 * 269.72555 * 13 12 10 15 15 C 1.38112 * 120.06622 * 179.72675 * 14 13 12 16 16 C 1.38879 * 119.92479 * 0.57226 * 15 14 13 17 17 O 1.35759 * 120.06088 * 179.68041 * 16 15 14 18 18 C 1.34834 * 116.99163 * 174.48901 * 17 16 15 19 19 H 1.07992 * 120.00764 * 5.05673 * 18 17 16 20 20 C 1.38654 * 119.99336 * 185.05784 * 18 17 16 21 21 N 1.31553 * 120.00426 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99716 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47251 * 60.00239 * 22 20 18 24 24 H 1.48503 * 109.46831 * 179.97438 * 22 20 18 25 25 H 1.48493 * 109.47203 * 299.99761 * 22 20 18 26 26 C 1.38875 * 119.86572 * 359.70747 * 16 15 14 27 27 C 1.38096 * 119.93397 * 359.97438 * 26 16 15 28 28 H 1.08998 * 109.47027 * 299.99761 * 1 2 3 29 29 H 1.08995 * 109.47018 * 59.99710 * 1 2 3 30 30 H 1.09000 * 109.47218 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46719 * 299.99788 * 4 2 1 32 32 H 1.09002 * 109.46891 * 59.99560 * 4 2 1 33 33 H 1.09001 * 109.47139 * 59.99849 * 6 5 4 34 34 H 1.08994 * 109.46764 * 180.02562 * 6 5 4 35 35 H 1.09001 * 109.46757 * 300.00271 * 6 5 4 36 36 H 1.09003 * 109.46869 * 90.00268 * 9 8 2 37 37 H 1.09001 * 109.47660 * 330.00183 * 9 8 2 38 38 H 1.09002 * 109.47407 * 210.00041 * 9 8 2 39 39 H 1.08997 * 109.46902 * 300.00170 * 12 10 8 40 40 H 1.08996 * 109.46689 * 60.00211 * 12 10 8 41 41 H 1.07994 * 119.96842 * 359.97438 * 14 13 12 42 42 H 1.07995 * 120.03144 * 180.27116 * 15 14 13 43 43 H 0.97005 * 120.00607 * 180.02562 * 21 20 18 44 44 H 1.07998 * 120.03338 * 179.97438 * 26 16 15 45 45 H 1.07996 * 119.96716 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 16 3.8540 -0.7219 -1.2489 6 6 4.2620 -1.6062 -2.7794 7 8 4.3272 -1.4639 -0.1332 8 7 2.0184 -0.6906 1.1961 9 6 1.6644 -2.0932 1.4279 10 6 2.7933 -0.0356 2.0833 11 8 3.0859 1.1256 1.8916 12 6 3.2952 -0.7460 3.3141 13 6 4.1320 0.2014 4.1346 14 6 5.4949 0.2850 3.9152 15 6 6.2637 1.1564 4.6617 16 6 5.6684 1.9404 5.6414 17 8 6.4225 2.7931 6.3812 18 6 5.7677 3.6061 7.2346 19 1 4.7007 3.5042 7.3662 20 6 6.4644 4.5731 7.9431 21 7 7.7643 4.6970 7.7832 22 14 5.5574 5.6990 9.1260 23 1 4.9018 4.8844 10.1804 24 1 6.5220 6.6372 9.7542 25 1 4.5277 6.4701 8.3842 26 6 4.3005 1.8498 5.8631 27 6 3.5362 0.9814 5.1090 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.6767 -1.7489 -1.2493 32 1 1.6766 -0.2073 -2.1392 33 1 3.8435 -1.0703 -3.6313 34 1 5.3450 -1.6684 -2.8852 35 1 3.8427 -2.6115 -2.7408 36 1 2.4158 -2.7377 0.9716 37 1 0.6904 -2.3003 0.9846 38 1 1.6238 -2.2852 2.5001 39 1 2.4472 -1.0882 3.9072 40 1 3.9005 -1.6025 3.0176 41 1 5.9579 -0.3287 3.1568 42 1 7.3272 1.2245 4.4870 43 1 8.2518 5.3732 8.2792 44 1 3.8349 2.4579 6.6246 45 1 2.4723 0.9108 5.2806 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157258521.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:13 Heat of formation + Delta-G solvation = -65.287030 kcal Electronic energy + Delta-G solvation = -27225.330152 eV Core-core repulsion = 23336.049428 eV Total energy + Delta-G solvation = -3889.280724 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.05535 -38.77447 -36.82470 -36.03546 -35.74850 -32.93182 -32.22696 -30.80815 -30.00280 -29.29453 -27.69846 -27.00793 -26.50818 -25.02095 -22.09998 -21.81919 -20.37852 -19.00141 -17.84975 -17.67633 -17.22956 -16.83463 -16.21281 -15.91191 -15.26940 -14.85994 -14.80957 -14.49094 -14.30236 -14.19945 -13.57339 -13.54434 -13.42328 -13.33859 -13.18492 -13.13360 -12.90272 -12.56971 -12.53563 -12.45551 -12.30556 -12.16196 -11.87776 -11.70875 -11.36162 -11.27170 -11.14636 -10.71017 -10.60599 -10.51526 -10.34030 -10.28741 -9.52771 -9.21037 -8.71716 -8.71420 -8.41557 -8.00585 -7.02581 -6.34675 -3.93098 1.27532 2.38494 2.39225 2.41792 2.89412 3.02463 3.19446 3.21650 3.23527 3.61549 4.05542 4.34663 4.63746 4.69062 4.80346 4.83076 4.91197 4.96064 5.06259 5.12724 5.20848 5.26644 5.30439 5.38622 5.40767 5.45432 5.53899 5.57592 5.60229 5.76096 5.84304 5.86815 5.88846 6.03410 6.35398 6.48146 6.56411 6.85212 7.05597 7.17631 7.36746 7.42137 7.52262 7.57240 7.98138 8.10915 8.39973 9.11111 9.83262 10.83695 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.019920 B = 0.002446 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.266092 B =11443.159084 C =11952.999394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.155 3.845 3 H 0.112 0.888 4 C -0.464 4.464 5 S 1.251 4.749 6 C -0.498 4.498 7 O -0.827 6.827 8 N -0.621 5.621 9 C 0.079 3.921 10 C 0.525 3.475 11 O -0.524 6.524 12 C -0.078 4.078 13 C -0.165 4.165 14 C -0.057 4.057 15 C -0.191 4.191 16 C 0.156 3.844 17 O -0.180 6.180 18 C -0.390 4.390 19 H 0.091 0.909 20 C 0.038 3.962 21 N -0.865 5.865 22 Si 0.940 3.060 23 H -0.271 1.271 24 H -0.279 1.279 25 H -0.270 1.270 26 C -0.232 4.232 27 C -0.058 4.058 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.055 0.945 31 H 0.085 0.915 32 H 0.124 0.876 33 H 0.108 0.892 34 H 0.103 0.897 35 H 0.075 0.925 36 H 0.058 0.942 37 H 0.064 0.936 38 H 0.073 0.927 39 H 0.087 0.913 40 H 0.095 0.905 41 H 0.109 0.891 42 H 0.116 0.884 43 H 0.269 0.731 44 H 0.126 0.874 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.461 -12.396 -21.043 28.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.050 3.950 3 H 0.130 0.870 4 C -0.601 4.601 5 S 1.447 4.553 6 C -0.655 4.655 7 O -0.822 6.822 8 N -0.357 5.357 9 C -0.064 4.064 10 C 0.315 3.685 11 O -0.399 6.399 12 C -0.118 4.118 13 C -0.167 4.167 14 C -0.076 4.076 15 C -0.210 4.210 16 C 0.103 3.897 17 O -0.084 6.084 18 C -0.466 4.466 19 H 0.108 0.892 20 C -0.165 4.165 21 N -0.501 5.501 22 Si 0.765 3.235 23 H -0.196 1.196 24 H -0.203 1.203 25 H -0.195 1.195 26 C -0.252 4.252 27 C -0.077 4.077 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.074 0.926 31 H 0.104 0.896 32 H 0.142 0.858 33 H 0.127 0.873 34 H 0.122 0.878 35 H 0.094 0.906 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.092 0.908 39 H 0.105 0.895 40 H 0.113 0.887 41 H 0.127 0.873 42 H 0.134 0.866 43 H 0.079 0.921 44 H 0.143 0.857 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -13.220 -11.217 -20.354 26.737 hybrid contribution -1.491 -1.788 0.333 2.352 sum -14.712 -13.005 -20.021 28.043 Atomic orbital electron populations 1.22107 0.94446 1.02112 1.02722 1.20543 0.94545 0.97781 0.82093 0.86988 1.28168 1.22110 1.05902 1.03908 1.71170 0.86037 1.13665 0.84419 1.27752 1.08474 1.10482 1.18756 1.93156 1.72549 1.73433 1.43072 1.47978 1.52252 1.12468 1.23037 1.21730 1.00232 0.82109 1.02376 1.20934 0.76566 0.86836 0.84178 1.90697 1.56341 1.16682 1.76191 1.20418 0.99775 0.98390 0.93176 1.18678 0.93574 1.03293 1.01111 1.20449 0.92895 0.96963 0.97273 1.20158 0.99868 1.01564 0.99448 1.19369 0.90082 0.90207 0.90064 1.83982 1.33811 1.43604 1.46973 1.21268 0.93443 1.12648 1.19266 0.89212 1.25262 0.95820 0.97197 0.98262 1.70032 1.06555 1.33218 1.40281 0.85803 0.78683 0.79413 0.79641 1.19599 1.20347 1.19533 1.21079 0.94155 1.04770 1.05165 1.20490 0.97789 0.94711 0.94665 0.91816 0.91289 0.92564 0.89565 0.85816 0.87321 0.87823 0.90584 0.92389 0.91725 0.90840 0.89527 0.88679 0.87253 0.86603 0.92095 0.85681 0.88000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.17 37.16 0.34 -0.76 16 2 C 0.15 1.40 2.70 -67.93 -0.18 1.22 16 3 H 0.11 1.15 6.90 -51.93 -0.36 0.79 16 4 C -0.46 -2.93 5.30 37.16 0.20 -2.73 16 5 S 1.25 9.89 13.68 -107.50 -1.47 8.42 16 6 C -0.50 -2.90 10.74 101.05 1.09 -1.82 16 7 O -0.83 -11.51 15.70 -35.23 -0.55 -12.07 16 8 N -0.62 -7.18 1.58 -173.93 -0.27 -7.46 16 9 C 0.08 0.72 9.16 59.84 0.55 1.27 16 10 C 0.53 8.14 7.06 -10.98 -0.08 8.07 16 11 O -0.52 -9.99 15.36 5.56 0.09 -9.91 16 12 C -0.08 -1.18 4.38 -29.03 -0.13 -1.31 16 13 C -0.17 -3.18 4.38 -104.58 -0.46 -3.64 16 14 C -0.06 -1.17 9.69 -39.60 -0.38 -1.56 16 15 C -0.19 -4.43 9.99 -39.39 -0.39 -4.82 16 16 C 0.16 4.04 6.65 -39.11 -0.26 3.78 16 17 O -0.18 -5.39 9.76 0.01 0.00 -5.39 16 18 C -0.39 -11.36 9.49 30.89 0.29 -11.07 16 19 H 0.09 2.43 5.20 -52.49 -0.27 2.15 16 20 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 21 N -0.87 -26.19 13.67 55.48 0.76 -25.44 16 22 Si 0.94 21.23 29.55 -169.99 -5.02 16.20 16 23 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 24 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 25 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 26 C -0.23 -5.45 9.17 -39.40 -0.36 -5.81 16 27 C -0.06 -1.18 9.69 -39.61 -0.38 -1.56 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.36 6.66 -51.93 -0.35 0.01 16 31 H 0.09 0.56 7.67 -51.92 -0.40 0.16 16 32 H 0.12 0.38 8.14 -51.92 -0.42 -0.04 16 33 H 0.11 0.34 8.14 -51.92 -0.42 -0.08 16 34 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.51 8.14 -51.92 -0.42 0.09 16 36 H 0.06 0.59 7.46 -51.93 -0.39 0.20 16 37 H 0.06 0.45 6.43 -51.93 -0.33 0.11 16 38 H 0.07 0.61 6.44 -51.93 -0.33 0.28 16 39 H 0.09 1.09 7.34 -51.93 -0.38 0.71 16 40 H 0.09 1.37 8.05 -51.93 -0.42 0.95 16 41 H 0.11 2.01 8.06 -52.49 -0.42 1.59 16 42 H 0.12 2.58 8.06 -52.49 -0.42 2.16 16 43 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 44 H 0.13 2.90 5.64 -52.49 -0.30 2.61 16 45 H 0.10 1.78 8.06 -52.49 -0.42 1.35 16 LS Contribution 382.81 15.07 5.77 5.77 Total: -1.00 -38.49 382.81 -7.44 -45.92 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -6.47 Total: 3.69 kcal Atomic # 6 Polarization: -19.48 SS G_CDS: -0.26 Total: -19.75 kcal Atomic # 7 Polarization: -33.38 SS G_CDS: 0.48 Total: -32.89 kcal Atomic # 8 Polarization: -26.90 SS G_CDS: -0.47 Total: -27.36 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: 9.89 SS G_CDS: -1.47 Total: 8.42 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -38.49 -7.44 -45.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157258521.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.366 kcal (2) G-P(sol) polarization free energy of solvation -38.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds