Wall clock time and date at job start Sat Apr 11 2020 05:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45202 * 109.46919 * 2 1 4 4 C 1.34230 * 116.99836 * 180.02562 * 3 2 1 5 5 O 1.20833 * 119.99930 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00262 * 180.27336 * 4 3 2 7 7 H 1.09000 * 109.47461 * 59.71633 * 6 4 3 8 8 N 1.46896 * 109.47652 * 179.72202 * 6 4 3 9 9 C 1.46900 * 111.00052 * 205.00227 * 8 6 4 10 10 C 1.53002 * 109.46831 * 179.97438 * 9 8 6 11 11 C 1.53005 * 109.46969 * 179.97438 * 10 9 8 12 12 S 1.80993 * 109.47119 * 179.97438 * 11 10 9 13 13 C 1.76202 * 100.00304 * 180.02562 * 12 11 10 14 14 H 1.08000 * 119.99422 * 0.02562 * 13 12 11 15 15 C 1.38791 * 120.00266 * 180.02562 * 13 12 11 16 16 N 1.31638 * 119.99815 * 180.02562 * 15 13 12 17 17 Si 1.86801 * 120.00119 * 0.02562 * 15 13 12 18 18 H 1.48505 * 109.46869 * 90.00271 * 17 15 13 19 19 H 1.48496 * 109.47069 * 209.99868 * 17 15 13 20 20 H 1.48497 * 109.46988 * 330.00319 * 17 15 13 21 21 C 1.50707 * 109.46767 * 299.72277 * 6 4 3 22 22 C 1.38292 * 119.96866 * 279.72072 * 21 6 4 23 23 C 1.38239 * 120.10872 * 179.72679 * 22 21 6 24 24 C 1.38171 * 120.05609 * 0.55200 * 23 22 21 25 25 C 1.38708 * 119.94196 * 359.72448 * 24 23 22 26 26 O 1.35901 * 120.05570 * 179.97438 * 25 24 23 27 27 C 1.38120 * 119.97207 * 99.99780 * 21 6 4 28 28 H 1.08999 * 109.47371 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47687 * 300.00275 * 1 2 3 30 30 H 1.09002 * 109.47633 * 60.00402 * 1 2 3 31 31 H 1.08998 * 109.47242 * 239.99429 * 2 1 3 32 32 H 1.09004 * 109.46797 * 119.99245 * 2 1 3 33 33 H 1.00899 * 111.00069 * 81.04022 * 8 6 4 34 34 H 1.09002 * 109.46994 * 299.99082 * 9 8 6 35 35 H 1.08996 * 109.47622 * 59.99840 * 9 8 6 36 36 H 1.08999 * 109.47131 * 299.99165 * 10 9 8 37 37 H 1.08997 * 109.47437 * 59.99980 * 10 9 8 38 38 H 1.08994 * 109.47237 * 300.00118 * 11 10 9 39 39 H 1.09007 * 109.46692 * 60.00178 * 11 10 9 40 40 H 0.97002 * 119.99592 * 180.02562 * 16 15 13 41 41 H 1.08004 * 119.94575 * 359.97438 * 22 21 6 42 42 H 1.07998 * 119.97591 * 180.25407 * 23 22 21 43 43 H 1.08000 * 120.02872 * 179.70440 * 24 23 22 44 44 H 0.96699 * 114.00168 * 270.02352 * 26 25 24 45 45 H 1.07998 * 120.03053 * 0.02562 * 27 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9374 0.0057 7 1 3.5816 3.4669 0.8960 8 7 5.3876 2.8606 0.0105 9 6 5.9763 4.0725 0.5958 10 6 7.5018 3.9552 0.5840 11 6 8.1151 5.2178 1.1930 12 16 9.9196 5.0788 1.1798 13 6 10.3507 6.6208 1.9154 14 1 9.5762 7.3104 2.2170 15 6 11.6855 6.9492 2.1072 16 7 12.0075 8.1010 2.6572 17 14 13.0251 5.7566 1.5848 18 1 13.4158 6.0357 0.1795 19 1 14.2067 5.9213 2.4690 20 1 12.5178 4.3651 1.6905 21 6 3.4604 3.6768 -1.2242 22 6 4.0925 3.4635 -2.4356 23 6 3.6690 4.1359 -3.5667 24 6 2.6201 5.0317 -3.4872 25 6 1.9881 5.2517 -2.2722 26 8 0.9565 6.1327 -2.1912 27 6 2.4113 4.5712 -1.1394 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5137 0.8901 33 1 5.7442 2.6980 -0.9193 34 1 5.6739 4.9418 0.0119 35 1 5.6290 4.1858 1.6227 36 1 7.8040 3.0860 1.1682 37 1 7.8496 3.8418 -0.4428 38 1 7.8129 6.0868 0.6087 39 1 7.7673 5.3316 2.2199 40 1 12.9404 8.3306 2.7909 41 1 4.9158 2.7673 -2.4988 42 1 4.1616 3.9646 -4.5124 43 1 2.2927 5.5604 -4.3702 44 1 1.2279 7.0387 -1.9895 45 1 1.9212 4.7411 -0.1922 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181584754.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:05 Heat of formation + Delta-G solvation = -134.904355 kcal Electronic energy + Delta-G solvation = -26268.053837 eV Core-core repulsion = 22375.754279 eV Total energy + Delta-G solvation = -3892.299558 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.85005 -40.65725 -38.70769 -37.59653 -37.00966 -34.68528 -34.56076 -32.64860 -31.91013 -30.61202 -28.59862 -27.91494 -25.74116 -24.23772 -23.68362 -23.13553 -22.45521 -21.61435 -19.61752 -19.40790 -18.57117 -17.96772 -17.51357 -17.45504 -17.10657 -16.88396 -16.62040 -16.24690 -16.09266 -15.56414 -15.35302 -15.03285 -14.88476 -14.67716 -14.54007 -13.91046 -13.79130 -13.65780 -13.55489 -13.40642 -13.25876 -13.03227 -12.97254 -12.78039 -12.63129 -12.53939 -12.47587 -12.09829 -11.90553 -11.73159 -11.56500 -11.52637 -11.47445 -11.15613 -10.54602 -9.93948 -9.72707 -9.59179 -8.97748 -8.51279 -6.22036 0.10456 0.26937 1.12773 1.14116 1.32198 1.46978 1.50189 1.77819 2.25374 2.54913 2.70147 2.86795 3.09967 3.18385 3.50410 3.72935 3.76721 3.99051 3.99409 4.07205 4.08875 4.11727 4.18672 4.24028 4.29446 4.33504 4.48780 4.52015 4.72490 4.75420 4.79619 4.82214 4.90709 4.93564 5.12582 5.15724 5.21652 5.30808 5.37701 5.39483 5.42784 5.70511 5.74656 5.77737 6.11038 6.15468 6.73428 6.82807 6.93158 8.61611 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013066 B = 0.002317 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.503570 B =12080.244007 C =13394.710691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.054 3.946 3 O -0.359 6.359 4 C 0.472 3.528 5 O -0.515 6.515 6 C 0.146 3.854 7 H 0.139 0.861 8 N -0.672 5.672 9 C 0.077 3.923 10 C -0.088 4.088 11 C -0.067 4.067 12 S -0.223 6.223 13 C -0.520 4.520 14 H 0.052 0.948 15 C 0.037 3.963 16 N -0.922 5.922 17 Si 0.925 3.075 18 H -0.261 1.261 19 H -0.264 1.264 20 H -0.230 1.230 21 C -0.107 4.107 22 C -0.133 4.133 23 C -0.099 4.099 24 C -0.145 4.145 25 C 0.102 3.898 26 O -0.509 6.509 27 C -0.127 4.127 28 H 0.100 0.900 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.353 0.647 34 H 0.047 0.953 35 H 0.084 0.916 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.276 0.724 41 H 0.129 0.871 42 H 0.150 0.850 43 H 0.145 0.855 44 H 0.411 0.589 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.591 -11.717 -11.681 31.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.019 4.019 3 O -0.276 6.276 4 C 0.314 3.686 5 O -0.403 6.403 6 C 0.034 3.966 7 H 0.157 0.843 8 N -0.306 5.306 9 C -0.052 4.052 10 C -0.127 4.127 11 C -0.216 4.216 12 S 0.005 5.995 13 C -0.667 4.667 14 H 0.070 0.930 15 C -0.168 4.168 16 N -0.560 5.560 17 Si 0.746 3.254 18 H -0.186 1.186 19 H -0.189 1.189 20 H -0.153 1.153 21 C -0.109 4.109 22 C -0.152 4.152 23 C -0.117 4.117 24 C -0.163 4.163 25 C 0.057 3.943 26 O -0.322 6.322 27 C -0.146 4.146 28 H 0.118 0.882 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.176 0.824 34 H 0.065 0.935 35 H 0.102 0.898 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.147 0.853 42 H 0.167 0.833 43 H 0.163 0.837 44 H 0.270 0.730 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -25.881 -13.592 -11.508 31.417 hybrid contribution 0.254 2.026 0.020 2.042 sum -25.628 -11.566 -11.488 30.373 Atomic orbital electron populations 1.21812 0.90474 1.04335 1.03619 1.23268 0.97002 0.79217 1.02454 1.86509 1.23683 1.33649 1.83711 1.23664 0.80763 0.92271 0.71938 1.90667 1.61024 1.43373 1.45213 1.19933 0.89214 0.88586 0.98854 0.84318 1.60129 1.02233 1.38813 1.29383 1.21899 0.93053 0.89795 1.00501 1.21167 0.94175 0.95700 1.01615 1.23039 0.93910 1.01406 1.03281 1.83923 1.06837 1.26986 1.81791 1.22339 0.95894 1.02547 1.45956 0.92968 1.25775 1.00524 0.96879 0.93629 1.70042 1.19702 1.23176 1.43110 0.85718 0.78950 0.81404 0.79311 1.18582 1.18872 1.15339 1.20024 0.97649 0.98433 0.94789 1.21170 1.00732 1.00748 0.92541 1.21259 0.96156 0.95203 0.99091 1.21751 0.96099 1.00142 0.98333 1.18550 0.88885 0.94191 0.92634 1.84774 1.30931 1.23026 1.93493 1.21410 0.96185 0.97510 0.99492 0.88169 0.91170 0.91587 0.91580 0.91292 0.82442 0.93470 0.89787 0.91026 0.91028 0.91333 0.91362 0.91449 0.85296 0.83254 0.83690 0.72969 0.83996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 10.29 71.98 0.74 -0.73 16 2 C 0.05 0.86 6.19 71.98 0.45 1.31 16 3 O -0.36 -7.23 10.14 -51.41 -0.52 -7.76 16 4 C 0.47 10.79 7.30 71.23 0.52 11.31 16 5 O -0.52 -14.94 16.18 21.94 0.36 -14.58 16 6 C 0.15 2.78 2.74 43.42 0.12 2.90 16 7 H 0.14 2.20 7.66 -2.39 -0.02 2.18 16 8 N -0.67 -14.52 5.72 -499.36 -2.86 -17.38 16 9 C 0.08 1.71 5.48 86.30 0.47 2.18 16 10 C -0.09 -2.47 5.48 30.60 0.17 -2.31 16 11 C -0.07 -2.48 5.67 71.98 0.41 -2.07 16 12 S -0.22 -10.70 19.41 -56.49 -1.10 -11.79 16 13 C -0.52 -30.54 10.04 67.95 0.68 -29.86 16 14 H 0.05 3.32 8.03 -2.91 -0.02 3.30 16 15 C 0.04 2.15 5.50 84.85 0.47 2.62 16 16 N -0.92 -56.75 13.97 21.65 0.30 -56.45 16 17 Si 0.92 44.31 27.74 68.60 1.90 46.21 16 18 H -0.26 -12.11 7.11 99.48 0.71 -11.40 16 19 H -0.26 -12.01 7.11 99.48 0.71 -11.31 16 20 H -0.23 -10.67 6.74 99.48 0.67 -10.00 16 21 C -0.11 -1.88 4.64 -19.88 -0.09 -1.97 16 22 C -0.13 -2.27 9.12 22.28 0.20 -2.06 16 23 C -0.10 -1.46 10.04 22.25 0.22 -1.23 16 24 C -0.14 -2.12 9.99 22.37 0.22 -1.90 16 25 C 0.10 1.63 6.70 22.51 0.15 1.78 16 26 O -0.51 -7.05 13.50 -92.44 -1.25 -8.30 16 27 C -0.13 -2.08 9.61 22.37 0.21 -1.87 16 28 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.07 1.08 8.13 -2.39 -0.02 1.06 16 32 H 0.07 1.11 8.13 -2.38 -0.02 1.09 16 33 H 0.35 7.31 6.33 -89.69 -0.57 6.74 16 34 H 0.05 0.97 8.00 -2.39 -0.02 0.95 16 35 H 0.08 1.77 8.05 -2.39 -0.02 1.75 16 36 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.07 2.50 8.14 -2.40 -0.02 2.48 16 39 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 40 H 0.28 15.67 8.31 -92.71 -0.77 14.90 16 41 H 0.13 2.08 6.49 -2.91 -0.02 2.06 16 42 H 0.15 1.54 8.06 -2.91 -0.02 1.52 16 43 H 0.15 1.61 8.06 -2.91 -0.02 1.58 16 44 H 0.41 1.99 9.06 -74.06 -0.67 1.32 16 45 H 0.14 1.96 8.04 -2.91 -0.02 1.94 16 Total: -1.00 -74.77 395.75 1.51 -73.26 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: -0.27 Total: 18.69 kcal Atomic # 6 Polarization: -26.84 SS G_CDS: 4.95 Total: -21.90 kcal Atomic # 7 Polarization: -71.27 SS G_CDS: -2.55 Total: -73.83 kcal Atomic # 8 Polarization: -29.22 SS G_CDS: -1.41 Total: -30.64 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 1.90 Total: 46.21 kcal Atomic # 16 Polarization: -10.70 SS G_CDS: -1.10 Total: -11.79 kcal Total: -74.77 1.51 -73.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181584754.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.649 kcal (2) G-P(sol) polarization free energy of solvation -74.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds