Wall clock time and date at job start Sat Apr 11 2020 05:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35899 * 116.99852 * 2 1 4 4 C 1.38456 * 119.76928 * 359.97438 * 3 2 1 5 5 C 1.38131 * 119.76310 * 180.02562 * 4 3 2 6 6 C 1.38033 * 119.77946 * 0.27201 * 5 4 3 7 7 C 1.38830 * 120.62507 * 359.89899 * 6 5 4 8 8 C 1.37621 * 119.88088 * 359.60406 * 7 6 5 9 9 C 1.50595 * 122.88689 * 181.44133 * 8 7 6 10 10 C 1.53274 * 110.82586 * 339.70955 * 9 8 7 11 11 N 1.47231 * 107.65896 * 47.61343 * 10 9 8 12 12 S 1.65603 * 121.33064 * 115.83367 * 11 10 9 13 13 O 1.42102 * 104.27650 * 153.64869 * 12 11 10 14 14 O 1.42098 * 104.27898 * 25.78929 * 12 11 10 15 15 C 1.81408 * 104.44779 * 269.71635 * 12 11 10 16 16 C 1.53000 * 109.46799 * 180.02562 * 15 12 11 17 17 C 1.52997 * 109.47060 * 180.02562 * 16 15 12 18 18 C 1.50697 * 109.47466 * 180.02562 * 17 16 15 19 19 H 1.08001 * 119.99890 * 0.02562 * 18 17 16 20 20 C 1.37876 * 120.00428 * 179.97438 * 18 17 16 21 21 N 1.31517 * 120.00362 * 180.02562 * 20 18 17 22 22 Si 1.86804 * 119.99850 * 359.97438 * 20 18 17 23 23 H 1.48504 * 109.47052 * 89.99717 * 22 20 18 24 24 H 1.48495 * 109.47307 * 209.99656 * 22 20 18 25 25 H 1.48500 * 109.47143 * 330.00164 * 22 20 18 26 26 C 1.46669 * 117.33114 * 295.56680 * 11 10 9 27 27 H 1.08995 * 109.47470 * 300.00433 * 1 2 3 28 28 H 1.09008 * 109.46573 * 60.00070 * 1 2 3 29 29 H 1.08998 * 109.47172 * 179.97438 * 1 2 3 30 30 H 1.07993 * 120.11776 * 0.02562 * 4 3 2 31 31 H 1.07995 * 120.11290 * 180.28389 * 5 4 3 32 32 H 1.07999 * 119.68718 * 179.97438 * 6 5 4 33 33 H 1.09002 * 109.20071 * 100.16947 * 9 8 7 34 34 H 1.08995 * 109.20388 * 219.51693 * 9 8 7 35 35 H 1.09001 * 109.88569 * 288.09452 * 10 9 8 36 36 H 1.09002 * 109.90867 * 167.14803 * 10 9 8 37 37 H 1.09001 * 109.46823 * 60.00309 * 15 12 11 38 38 H 1.08992 * 109.47429 * 300.00345 * 15 12 11 39 39 H 1.09002 * 109.47398 * 300.00340 * 16 15 12 40 40 H 1.09001 * 109.47194 * 60.00520 * 16 15 12 41 41 H 1.09002 * 109.47153 * 300.00319 * 17 16 15 42 42 H 1.08998 * 109.47533 * 59.99948 * 17 16 15 43 43 H 0.96994 * 119.99814 * 180.02562 * 21 20 18 44 44 H 1.09001 * 109.43624 * 164.73476 * 26 11 10 45 45 H 1.09007 * 109.43321 * 284.64522 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2872 2.3690 -0.0005 5 6 1.9144 3.5997 -0.0011 6 6 3.2931 3.6665 -0.0068 7 6 4.0573 2.5075 -0.0098 8 6 3.4386 1.2783 0.0010 9 6 4.2005 -0.0204 0.0303 10 6 5.6414 0.1821 -0.4515 11 7 6.1852 1.3579 0.2482 12 16 7.4582 1.2222 1.2986 13 8 8.0741 2.5025 1.2700 14 8 8.1543 0.0644 0.8581 15 6 6.6840 0.9242 2.9119 16 6 7.7701 0.7801 3.9799 17 6 7.1173 0.5281 5.3404 18 6 8.1869 0.3868 6.3925 19 1 9.2283 0.4689 6.1182 20 6 7.8361 0.1537 7.7054 21 7 8.7696 0.0309 8.6236 22 14 6.0349 0.0138 8.1802 23 1 5.6034 -1.4032 8.0732 24 1 5.8534 0.4822 9.5776 25 1 5.2158 0.8508 7.2671 26 6 5.5582 2.6549 -0.0270 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 0.2089 2.3103 -0.0005 31 1 1.3281 4.5066 0.0031 32 1 3.7819 4.6296 -0.0076 33 1 4.2124 -0.4062 1.0497 34 1 3.7053 -0.7413 -0.6201 35 1 5.6515 0.3560 -1.5275 36 1 6.2394 -0.6977 -0.2139 37 1 6.0934 0.0091 2.8680 38 1 6.0358 1.7632 3.1644 39 1 8.4188 -0.0588 3.7276 40 1 8.3604 1.6954 4.0237 41 1 6.4683 1.3667 5.5929 42 1 6.5272 -0.3873 5.2964 43 1 8.5228 -0.1335 9.5471 44 1 5.8609 3.3730 0.7351 45 1 5.8759 3.0107 -1.0072 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000182371791.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:08 Heat of formation + Delta-G solvation = -114.629237 kcal Electronic energy + Delta-G solvation = -27612.655758 eV Core-core repulsion = 23721.235396 eV Total energy + Delta-G solvation = -3891.420362 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.44658 -39.24135 -38.30675 -37.23763 -37.02520 -36.52599 -34.26671 -33.45104 -32.07895 -30.17853 -29.96260 -28.15340 -26.12022 -25.39233 -24.67673 -22.83576 -22.27398 -21.23707 -19.74659 -19.03568 -18.90693 -18.49615 -17.46992 -17.40140 -16.99181 -16.72509 -16.56158 -16.26536 -16.16071 -15.69286 -15.30728 -14.93583 -14.78131 -14.71939 -14.47130 -14.11245 -13.81613 -13.71646 -13.46877 -13.45952 -13.25013 -13.23307 -13.00133 -12.92760 -12.74085 -12.72214 -12.59076 -12.40139 -12.15587 -11.86846 -11.83839 -11.67402 -11.58543 -11.42966 -11.24287 -10.79111 -10.10468 -9.59153 -9.03040 -8.31440 -6.37149 -0.82691 0.33634 0.48682 1.34699 1.36945 1.48634 1.58882 2.34432 2.38587 2.75237 2.75845 3.03473 3.07285 3.51572 3.70542 3.74217 3.85377 3.95737 4.02005 4.14824 4.21245 4.30285 4.37041 4.40174 4.42637 4.50376 4.54926 4.59145 4.63490 4.68910 4.75680 4.78310 4.84349 4.93309 4.96179 5.09600 5.23448 5.31406 5.36358 5.42913 5.48401 5.54608 5.60725 5.67663 5.83934 6.23853 6.47424 6.70817 7.27468 8.85544 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010598 B = 0.003443 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2641.396628 B = 8130.101003 C = 9589.665970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.332 6.332 3 C 0.111 3.889 4 C -0.215 4.215 5 C -0.084 4.084 6 C -0.158 4.158 7 C -0.067 4.067 8 C -0.115 4.115 9 C -0.088 4.088 10 C 0.117 3.883 11 N -0.999 5.999 12 S 2.624 3.376 13 O -0.982 6.982 14 O -0.982 6.982 15 C -0.612 4.612 16 C -0.102 4.102 17 C -0.004 4.004 18 C -0.543 4.543 19 H 0.032 0.968 20 C 0.003 3.997 21 N -0.951 5.951 22 Si 0.953 3.047 23 H -0.264 1.264 24 H -0.283 1.283 25 H -0.243 1.243 26 C 0.161 3.839 27 H 0.060 0.940 28 H 0.066 0.934 29 H 0.115 0.885 30 H 0.145 0.855 31 H 0.149 0.851 32 H 0.145 0.855 33 H 0.076 0.924 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.101 0.899 37 H 0.149 0.851 38 H 0.147 0.853 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.029 0.971 42 H 0.029 0.971 43 H 0.267 0.733 44 H 0.105 0.895 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.941 4.592 -24.109 32.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.246 6.246 3 C 0.065 3.935 4 C -0.234 4.234 5 C -0.102 4.102 6 C -0.177 4.177 7 C -0.069 4.069 8 C -0.116 4.116 9 C -0.127 4.127 10 C -0.008 4.008 11 N -0.836 5.836 12 S 2.721 3.279 13 O -0.973 6.973 14 O -0.972 6.972 15 C -0.743 4.743 16 C -0.141 4.141 17 C -0.043 4.043 18 C -0.581 4.581 19 H 0.050 0.950 20 C -0.194 4.194 21 N -0.591 5.591 22 Si 0.775 3.225 23 H -0.189 1.189 24 H -0.209 1.209 25 H -0.166 1.166 26 C 0.036 3.964 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.133 0.867 30 H 0.163 0.837 31 H 0.167 0.833 32 H 0.163 0.837 33 H 0.094 0.906 34 H 0.115 0.885 35 H 0.113 0.887 36 H 0.120 0.880 37 H 0.167 0.833 38 H 0.165 0.835 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.048 0.952 42 H 0.047 0.953 43 H 0.076 0.924 44 H 0.123 0.877 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -20.887 4.433 -24.206 32.278 hybrid contribution -0.998 -0.124 1.202 1.567 sum -21.884 4.309 -23.004 32.042 Atomic orbital electron populations 1.23295 0.76754 1.05319 1.02058 1.86033 1.23072 1.26877 1.88572 1.19201 0.91919 0.84974 0.97361 1.21447 1.00992 0.92267 1.08675 1.21167 0.94550 0.97813 0.96693 1.21250 0.94278 0.98293 1.03833 1.19742 0.95496 0.92454 0.99164 1.18935 0.90559 0.95588 1.06528 1.20744 0.94483 0.94446 1.03005 1.21744 0.93568 0.87265 0.98179 1.57689 1.52830 1.14737 1.58361 1.04512 0.74069 0.73164 0.76204 1.93534 1.74387 1.42309 1.87042 1.93530 1.71194 1.52258 1.80216 1.30590 1.11384 1.13634 1.18647 1.21178 0.96056 1.02091 0.94801 1.19490 0.95639 0.97334 0.91825 1.21543 0.93888 1.49301 0.93404 0.94975 1.26072 1.02980 0.94027 0.96304 1.70075 1.35624 1.50976 1.02448 0.85627 0.79325 0.79711 0.77821 1.18909 1.20888 1.16598 1.20392 0.87983 0.83790 1.04242 0.92140 0.91589 0.86719 0.83687 0.83308 0.83739 0.90551 0.88546 0.88744 0.88028 0.83286 0.83451 0.91708 0.91726 0.95240 0.95311 0.92374 0.87680 0.87975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 113.37 1.11 1.30 16 2 O -0.33 -5.75 9.47 -92.41 -0.87 -6.63 16 3 C 0.11 2.04 6.65 22.61 0.15 2.19 16 4 C -0.22 -3.22 9.02 22.30 0.20 -3.02 16 5 C -0.08 -1.15 10.05 22.20 0.22 -0.93 16 6 C -0.16 -2.38 9.62 22.36 0.22 -2.16 16 7 C -0.07 -1.20 5.82 -19.83 -0.12 -1.32 16 8 C -0.12 -2.22 5.77 -19.76 -0.11 -2.34 16 9 C -0.09 -1.57 5.52 29.91 0.17 -1.40 16 10 C 0.12 2.10 6.45 86.33 0.56 2.65 16 11 N -1.00 -21.13 3.18 -516.98 -1.65 -22.78 16 12 S 2.62 74.18 5.45 -56.49 -0.31 73.88 16 13 O -0.98 -32.91 16.93 -127.65 -2.16 -35.07 16 14 O -0.98 -33.06 16.68 -127.65 -2.13 -35.19 16 15 C -0.61 -17.30 6.18 71.98 0.44 -16.86 16 16 C -0.10 -4.01 5.16 30.59 0.16 -3.85 16 17 C 0.00 -0.20 4.04 29.85 0.12 -0.08 16 18 C -0.54 -31.90 9.66 25.60 0.25 -31.65 16 19 H 0.03 2.08 7.99 -2.91 -0.02 2.05 16 20 C 0.00 0.18 5.47 84.65 0.46 0.64 16 21 N -0.95 -60.40 13.96 21.45 0.30 -60.10 16 22 Si 0.95 43.92 27.47 68.60 1.88 45.80 16 23 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 24 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 25 H -0.24 -10.20 6.54 99.48 0.65 -9.55 16 26 C 0.16 2.89 6.02 85.64 0.52 3.41 16 27 H 0.06 0.51 7.65 -2.39 -0.02 0.49 16 28 H 0.07 0.46 7.65 -2.38 -0.02 0.44 16 29 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.15 1.50 6.26 -2.91 -0.02 1.48 16 31 H 0.15 1.25 8.06 -2.91 -0.02 1.23 16 32 H 0.14 1.57 8.05 -2.91 -0.02 1.54 16 33 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.10 1.53 7.66 -2.39 -0.02 1.51 16 35 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.10 1.85 6.98 -2.39 -0.02 1.83 16 37 H 0.15 3.56 8.14 -2.39 -0.02 3.54 16 38 H 0.15 3.57 8.14 -2.39 -0.02 3.55 16 39 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 40 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 41 H 0.03 1.31 7.20 -2.39 -0.02 1.29 16 42 H 0.03 1.26 7.57 -2.39 -0.02 1.24 16 43 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 44 H 0.11 1.82 7.40 -2.39 -0.02 1.80 16 45 H 0.10 1.52 8.14 -2.38 -0.02 1.50 16 Total: -1.00 -79.34 375.01 0.33 -79.01 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: 0.93 Total: 14.48 kcal Atomic # 6 Polarization: -57.74 SS G_CDS: 4.34 Total: -53.40 kcal Atomic # 7 Polarization: -81.53 SS G_CDS: -1.35 Total: -82.88 kcal Atomic # 8 Polarization: -71.72 SS G_CDS: -5.17 Total: -76.89 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 1.88 Total: 45.80 kcal Atomic # 16 Polarization: 74.18 SS G_CDS: -0.31 Total: 73.88 kcal Total: -79.34 0.33 -79.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182371791.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.621 kcal (2) G-P(sol) polarization free energy of solvation -79.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds