Wall clock time and date at job start Sat Apr 11 2020 05:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47277 * 2 1 4 4 C 1.50701 * 109.47046 * 120.00042 * 2 1 3 5 5 H 1.08007 * 120.00171 * 120.00184 * 4 2 1 6 6 C 1.37878 * 120.00079 * 299.99866 * 4 2 1 7 7 N 1.31509 * 119.99852 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00188 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47151 * 89.99727 * 8 6 4 10 10 H 1.48501 * 109.47284 * 210.00039 * 8 6 4 11 11 H 1.48501 * 109.46883 * 330.00131 * 8 6 4 12 12 N 1.46498 * 109.47138 * 239.99661 * 2 1 3 13 13 C 1.46506 * 120.00239 * 300.00351 * 12 2 1 14 14 S 1.65597 * 119.99910 * 119.72126 * 12 2 1 15 15 O 1.42103 * 104.27453 * 26.35340 * 14 12 2 16 16 O 1.42101 * 104.27834 * 154.20373 * 14 12 2 17 17 C 1.81392 * 104.45287 * 270.28024 * 14 12 2 18 18 C 1.53002 * 109.47473 * 180.02562 * 17 14 12 19 19 C 1.50700 * 109.47327 * 180.02562 * 18 17 14 20 20 C 1.38283 * 120.11234 * 269.71818 * 19 18 17 21 21 C 1.37932 * 120.34826 * 179.97438 * 20 19 18 22 22 C 1.39286 * 120.24074 * 0.54429 * 21 20 19 23 23 C 1.38884 * 118.87502 * 359.42158 * 22 21 20 24 24 C 1.37743 * 120.78428 * 0.41343 * 23 22 21 25 25 C 1.51643 * 107.03893 * 180.67808 * 23 22 21 26 26 C 1.54713 * 101.92163 * 15.46632 * 25 23 22 27 27 O 1.36137 * 129.88492 * 179.09216 * 22 21 20 28 28 H 1.08993 * 109.47037 * 60.00055 * 1 2 3 29 29 H 1.09007 * 109.47037 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47126 * 299.99981 * 1 2 3 31 31 H 0.97007 * 120.00297 * 179.97438 * 7 6 4 32 32 H 1.08999 * 109.46892 * 269.72399 * 13 12 2 33 33 H 1.09000 * 109.46803 * 29.71572 * 13 12 2 34 34 H 1.09000 * 109.47214 * 149.72366 * 13 12 2 35 35 H 1.09005 * 109.47063 * 299.99983 * 17 14 12 36 36 H 1.08995 * 109.47533 * 59.99686 * 17 14 12 37 37 H 1.09005 * 109.46725 * 299.99899 * 18 17 14 38 38 H 1.08995 * 109.47234 * 59.99213 * 18 17 14 39 39 H 1.07993 * 119.82970 * 0.17609 * 20 19 18 40 40 H 1.08002 * 119.87692 * 180.28378 * 21 20 19 41 41 H 1.07996 * 120.00892 * 179.77366 * 24 23 22 42 42 H 1.08998 * 110.94174 * 133.62625 * 25 23 22 43 43 H 1.09001 * 110.93917 * 257.28176 * 25 23 22 44 44 H 1.09002 * 110.74463 * 93.01477 * 26 25 23 45 45 H 1.08992 * 110.75218 * 216.18937 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9436 0.8302 2.6034 8 14 2.3225 -1.1195 4.0080 9 1 3.6305 -0.5440 4.4119 10 1 1.3444 -0.9490 5.1124 11 1 2.4880 -2.5654 3.7122 12 7 2.0183 -0.6907 -1.1961 13 6 1.6644 -2.0933 -1.4280 14 16 2.9647 0.1161 -2.2897 15 8 3.5976 1.1316 -1.5233 16 8 3.7238 -0.9074 -2.9185 17 6 1.7847 0.8436 -3.4596 18 6 2.5461 1.6242 -4.5329 19 6 1.5657 2.2292 -5.5045 20 6 1.1790 1.5240 -6.6294 21 6 0.2816 2.0728 -7.5216 22 6 -0.2345 3.3478 -7.3027 23 6 0.1608 4.0459 -6.1690 24 6 1.0545 3.4945 -5.2775 25 6 -0.5668 5.3761 -6.1900 26 6 -1.6743 5.1181 -7.2390 27 8 -1.1064 4.0772 -8.0519 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.7089 1.1614 3.4844 32 1 2.4182 -2.7377 -0.9758 33 1 0.6926 -2.3015 -0.9803 34 1 1.6190 -2.2841 -2.5002 35 1 1.2043 0.0503 -3.9309 36 1 1.1136 1.5174 -2.9271 37 1 3.1267 2.4175 -4.0619 38 1 3.2169 0.9501 -5.0653 39 1 1.5791 0.5371 -6.8086 40 1 -0.0187 1.5134 -8.3953 41 1 1.3561 4.0499 -4.4018 42 1 -0.9986 5.5994 -5.2144 43 1 0.0970 6.1782 -6.5129 44 1 -2.5902 4.7755 -6.7572 45 1 -1.8626 6.0142 -7.8302 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189429555.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:35 Heat of formation + Delta-G solvation = -77.991178 kcal Electronic energy + Delta-G solvation = -27335.058164 eV Core-core repulsion = 23445.226547 eV Total energy + Delta-G solvation = -3889.831617 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.30878 -38.19655 -36.57346 -36.19084 -35.32543 -33.85742 -32.90944 -32.58080 -29.60009 -29.14117 -29.09986 -25.61801 -25.20347 -24.49145 -23.48084 -22.15650 -21.06330 -20.53438 -18.18614 -17.62526 -17.10512 -16.91263 -16.58733 -16.40641 -15.90602 -15.59931 -15.19958 -14.67228 -14.33839 -14.17081 -13.65983 -13.46209 -13.40342 -13.29717 -13.13154 -13.07378 -12.81414 -12.42626 -12.11961 -11.99878 -11.97213 -11.75380 -11.51890 -11.44457 -11.35761 -11.21777 -11.00707 -10.96397 -10.92724 -10.81020 -10.53656 -10.30337 -10.21023 -9.94387 -9.25390 -9.09760 -8.44853 -8.25883 -7.92081 -6.06972 -4.12736 0.76388 1.07308 1.15807 2.98998 3.29800 3.30636 3.36439 3.40272 3.47444 4.11943 4.26460 4.37580 4.40498 4.54601 4.62736 4.66846 4.68878 4.83667 4.93040 5.02837 5.13709 5.17173 5.24750 5.34474 5.38207 5.43089 5.51676 5.56370 5.58369 5.86764 5.89489 6.04693 6.14684 6.16625 6.35681 6.37163 6.41549 6.61551 6.73220 6.77687 6.95010 6.98630 7.42561 7.62823 7.78752 8.03520 8.27975 8.89480 9.52780 10.98912 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017545 B = 0.002729 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.515151 B =10258.037845 C =11094.265423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.265 3.735 3 H 0.061 0.939 4 C -0.516 4.516 5 H 0.063 0.937 6 C 0.063 3.937 7 N -0.892 5.892 8 Si 0.898 3.102 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.983 5.983 13 C 0.109 3.891 14 S 2.603 3.397 15 O -0.947 6.947 16 O -0.971 6.971 17 C -0.637 4.637 18 C -0.066 4.066 19 C -0.097 4.097 20 C -0.081 4.081 21 C -0.135 4.135 22 C 0.098 3.902 23 C -0.172 4.172 24 C -0.064 4.064 25 C -0.111 4.111 26 C 0.052 3.948 27 O -0.307 6.307 28 H 0.009 0.991 29 H 0.035 0.965 30 H 0.094 0.906 31 H 0.263 0.737 32 H 0.050 0.950 33 H 0.071 0.929 34 H 0.049 0.951 35 H 0.127 0.873 36 H 0.132 0.868 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.134 0.866 40 H 0.128 0.872 41 H 0.129 0.871 42 H 0.093 0.907 43 H 0.091 0.909 44 H 0.077 0.923 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.986 5.912 -18.924 20.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.163 3.837 3 H 0.079 0.921 4 C -0.555 4.555 5 H 0.081 0.919 6 C -0.139 4.139 7 N -0.531 5.531 8 Si 0.726 3.274 9 H -0.205 1.205 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.823 5.823 13 C -0.037 4.037 14 S 2.695 3.305 15 O -0.938 6.938 16 O -0.962 6.962 17 C -0.763 4.763 18 C -0.105 4.105 19 C -0.098 4.098 20 C -0.099 4.099 21 C -0.154 4.154 22 C 0.053 3.947 23 C -0.173 4.173 24 C -0.082 4.082 25 C -0.148 4.148 26 C -0.023 4.023 27 O -0.222 6.222 28 H 0.028 0.972 29 H 0.054 0.946 30 H 0.112 0.888 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.090 0.910 34 H 0.067 0.933 35 H 0.145 0.855 36 H 0.150 0.850 37 H 0.106 0.894 38 H 0.105 0.895 39 H 0.152 0.848 40 H 0.146 0.854 41 H 0.147 0.853 42 H 0.112 0.888 43 H 0.109 0.891 44 H 0.095 0.905 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -4.219 6.056 -19.001 20.384 hybrid contribution -0.616 -0.203 0.822 1.047 sum -4.835 5.853 -18.179 19.701 Atomic orbital electron populations 1.22173 0.98439 0.99875 1.00642 1.18769 0.91038 0.93259 0.80664 0.92112 1.21318 1.31359 1.12936 0.89921 0.91908 1.24904 0.94994 0.95047 0.98993 1.69851 1.36701 1.22799 1.23751 0.86494 0.78661 0.79977 0.82256 1.20547 1.21218 1.19885 1.57431 1.70684 1.19422 1.34752 1.21161 1.01674 0.82105 0.98799 1.05181 0.75915 0.74717 0.74725 1.93599 1.72564 1.60624 1.66985 1.93526 1.67872 1.56261 1.78512 1.30908 1.18486 1.12195 1.14733 1.20222 0.96002 0.99789 0.94458 1.19534 0.99656 0.94540 0.96059 1.20815 0.96201 0.99750 0.93169 1.20223 1.00951 0.92233 1.01973 1.19568 0.91977 0.92272 0.90903 1.20730 1.02167 0.96599 0.97809 1.20265 0.95159 0.94631 0.98186 1.21805 0.96795 0.95333 1.00894 1.23825 0.96220 0.90233 0.92069 1.86810 1.56247 1.43403 1.35706 0.97161 0.94611 0.88754 0.92732 0.93097 0.91019 0.93263 0.85459 0.84961 0.89400 0.89477 0.84815 0.85372 0.85298 0.88828 0.89115 0.90490 0.87643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.35 8.95 37.16 0.33 -3.01 16 2 C 0.27 6.36 2.57 -69.08 -0.18 6.18 16 3 H 0.06 1.60 6.87 -51.93 -0.36 1.24 16 4 C -0.52 -13.83 8.37 -34.44 -0.29 -14.12 16 5 H 0.06 1.69 7.65 -52.48 -0.40 1.29 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -24.61 11.32 55.43 0.63 -23.98 16 8 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 9 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 12 N -0.98 -19.81 2.99 -115.85 -0.35 -20.15 16 13 C 0.11 1.90 9.44 59.85 0.56 2.46 16 14 S 2.60 47.50 5.36 -107.50 -0.58 46.92 16 15 O -0.95 -20.99 16.58 -57.54 -0.95 -21.95 16 16 O -0.97 -19.01 17.09 -57.54 -0.98 -19.99 16 17 C -0.64 -8.48 6.16 37.16 0.23 -8.25 16 18 C -0.07 -0.79 5.36 -27.88 -0.15 -0.94 16 19 C -0.10 -1.12 5.14 -104.57 -0.54 -1.66 16 20 C -0.08 -0.86 9.68 -39.68 -0.38 -1.25 16 21 C -0.14 -1.45 10.06 -39.30 -0.40 -1.85 16 22 C 0.10 1.13 7.04 -38.95 -0.27 0.86 16 23 C -0.17 -1.90 6.27 -104.10 -0.65 -2.55 16 24 C -0.06 -0.73 9.70 -39.72 -0.39 -1.12 16 25 C -0.11 -0.89 7.12 -26.52 -0.19 -1.07 16 26 C 0.05 0.39 8.01 38.06 0.30 0.69 16 27 O -0.31 -3.40 11.10 -20.18 -0.22 -3.62 16 28 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.03 0.74 6.66 -51.92 -0.35 0.40 16 30 H 0.09 2.32 6.07 -51.93 -0.32 2.00 16 31 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 32 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.07 1.20 6.43 -51.93 -0.33 0.87 16 34 H 0.05 0.69 7.79 -51.93 -0.40 0.29 16 35 H 0.13 1.45 8.14 -51.92 -0.42 1.03 16 36 H 0.13 1.73 8.14 -51.93 -0.42 1.31 16 37 H 0.09 1.00 8.09 -51.93 -0.42 0.58 16 38 H 0.09 0.92 8.09 -51.93 -0.42 0.50 16 39 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 40 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 41 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 42 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 379.72 15.07 5.72 5.72 Total: -1.00 -33.48 379.72 -10.63 -44.11 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -6.78 Total: 0.87 kcal Atomic # 6 Polarization: -21.93 SS G_CDS: -2.10 Total: -24.03 kcal Atomic # 7 Polarization: -44.41 SS G_CDS: 0.28 Total: -44.13 kcal Atomic # 8 Polarization: -43.40 SS G_CDS: -2.16 Total: -45.56 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: 47.50 SS G_CDS: -0.58 Total: 46.92 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.48 -10.63 -44.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189429555.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.878 kcal (2) G-P(sol) polarization free energy of solvation -33.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds