Wall clock time and date at job start Sat Apr 11 2020 05:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47277 * 2 1 4 4 C 1.50701 * 109.47046 * 120.00042 * 2 1 3 5 5 H 1.08007 * 120.00171 * 120.00184 * 4 2 1 6 6 C 1.37878 * 120.00079 * 299.99866 * 4 2 1 7 7 N 1.31509 * 119.99852 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00188 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47151 * 89.99727 * 8 6 4 10 10 H 1.48501 * 109.47284 * 210.00039 * 8 6 4 11 11 H 1.48501 * 109.46883 * 330.00131 * 8 6 4 12 12 N 1.46498 * 109.47138 * 239.99661 * 2 1 3 13 13 C 1.46506 * 120.00239 * 300.00351 * 12 2 1 14 14 S 1.65597 * 119.99910 * 119.72126 * 12 2 1 15 15 O 1.42103 * 104.27453 * 26.35340 * 14 12 2 16 16 O 1.42101 * 104.27834 * 154.20373 * 14 12 2 17 17 C 1.81392 * 104.45287 * 270.28024 * 14 12 2 18 18 C 1.53002 * 109.47473 * 180.02562 * 17 14 12 19 19 C 1.50700 * 109.47327 * 180.02562 * 18 17 14 20 20 C 1.38283 * 120.11234 * 269.71818 * 19 18 17 21 21 C 1.37932 * 120.34826 * 179.97438 * 20 19 18 22 22 C 1.39286 * 120.24074 * 0.54429 * 21 20 19 23 23 C 1.38884 * 118.87502 * 359.42158 * 22 21 20 24 24 C 1.37743 * 120.78428 * 0.41343 * 23 22 21 25 25 C 1.51643 * 107.03893 * 180.67808 * 23 22 21 26 26 C 1.54713 * 101.92163 * 15.46632 * 25 23 22 27 27 O 1.36137 * 129.88492 * 179.09216 * 22 21 20 28 28 H 1.08993 * 109.47037 * 60.00055 * 1 2 3 29 29 H 1.09007 * 109.47037 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47126 * 299.99981 * 1 2 3 31 31 H 0.97007 * 120.00297 * 179.97438 * 7 6 4 32 32 H 1.08999 * 109.46892 * 269.72399 * 13 12 2 33 33 H 1.09000 * 109.46803 * 29.71572 * 13 12 2 34 34 H 1.09000 * 109.47214 * 149.72366 * 13 12 2 35 35 H 1.09005 * 109.47063 * 299.99983 * 17 14 12 36 36 H 1.08995 * 109.47533 * 59.99686 * 17 14 12 37 37 H 1.09005 * 109.46725 * 299.99899 * 18 17 14 38 38 H 1.08995 * 109.47234 * 59.99213 * 18 17 14 39 39 H 1.07993 * 119.82970 * 0.17609 * 20 19 18 40 40 H 1.08002 * 119.87692 * 180.28378 * 21 20 19 41 41 H 1.07996 * 120.00892 * 179.77366 * 24 23 22 42 42 H 1.08998 * 110.94174 * 133.62625 * 25 23 22 43 43 H 1.09001 * 110.93917 * 257.28176 * 25 23 22 44 44 H 1.09002 * 110.74463 * 93.01477 * 26 25 23 45 45 H 1.08992 * 110.75218 * 216.18937 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9436 0.8302 2.6034 8 14 2.3225 -1.1195 4.0080 9 1 3.6305 -0.5440 4.4119 10 1 1.3444 -0.9490 5.1124 11 1 2.4880 -2.5654 3.7122 12 7 2.0183 -0.6907 -1.1961 13 6 1.6644 -2.0933 -1.4280 14 16 2.9647 0.1161 -2.2897 15 8 3.5976 1.1316 -1.5233 16 8 3.7238 -0.9074 -2.9185 17 6 1.7847 0.8436 -3.4596 18 6 2.5461 1.6242 -4.5329 19 6 1.5657 2.2292 -5.5045 20 6 1.1790 1.5240 -6.6294 21 6 0.2816 2.0728 -7.5216 22 6 -0.2345 3.3478 -7.3027 23 6 0.1608 4.0459 -6.1690 24 6 1.0545 3.4945 -5.2775 25 6 -0.5668 5.3761 -6.1900 26 6 -1.6743 5.1181 -7.2390 27 8 -1.1064 4.0772 -8.0519 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.7089 1.1614 3.4844 32 1 2.4182 -2.7377 -0.9758 33 1 0.6926 -2.3015 -0.9803 34 1 1.6190 -2.2841 -2.5002 35 1 1.2043 0.0503 -3.9309 36 1 1.1136 1.5174 -2.9271 37 1 3.1267 2.4175 -4.0619 38 1 3.2169 0.9501 -5.0653 39 1 1.5791 0.5371 -6.8086 40 1 -0.0187 1.5134 -8.3953 41 1 1.3561 4.0499 -4.4018 42 1 -0.9986 5.5994 -5.2144 43 1 0.0970 6.1782 -6.5129 44 1 -2.5902 4.7755 -6.7572 45 1 -1.8626 6.0142 -7.8302 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189429555.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:34 Heat of formation + Delta-G solvation = -99.459507 kcal Electronic energy + Delta-G solvation = -27335.989101 eV Core-core repulsion = 23445.226547 eV Total energy + Delta-G solvation = -3890.762554 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.03913 -38.99167 -38.14206 -37.85052 -36.88052 -34.80017 -34.50645 -33.61217 -30.87590 -30.37688 -29.96219 -27.25587 -27.00203 -25.46201 -24.20622 -22.90254 -22.48625 -21.68827 -19.69963 -18.54990 -18.41348 -18.34689 -17.75518 -17.41624 -17.10598 -17.02572 -16.53218 -16.10304 -15.35991 -15.11589 -15.05563 -14.74177 -14.54897 -14.26902 -14.24650 -14.12273 -13.81898 -13.67733 -13.30931 -13.25678 -13.12172 -13.08578 -12.96040 -12.94315 -12.78103 -12.61557 -12.53756 -12.39033 -12.21116 -12.13922 -11.88827 -11.73503 -11.71283 -11.40161 -11.11244 -10.48723 -9.87932 -9.57881 -9.03465 -8.10598 -6.23068 -0.63563 0.27175 0.33610 1.41744 1.44009 1.52701 1.85727 2.31058 2.44618 2.64189 3.02408 3.17728 3.26913 3.44598 3.62349 3.72862 3.80400 3.90037 3.95929 4.14118 4.15512 4.26087 4.40933 4.44152 4.51041 4.65486 4.68683 4.72074 4.84416 4.86642 4.87688 4.89746 5.01168 5.07987 5.11846 5.15495 5.23523 5.25242 5.38354 5.57326 5.62589 5.63528 5.77040 5.91591 6.17038 6.19532 6.33706 6.84117 7.45351 8.93348 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017545 B = 0.002729 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.515151 B =10258.037845 C =11094.265423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.270 3.730 3 H 0.030 0.970 4 C -0.536 4.536 5 H 0.052 0.948 6 C 0.018 3.982 7 N -0.913 5.913 8 Si 0.952 3.048 9 H -0.283 1.283 10 H -0.278 1.278 11 H -0.269 1.269 12 N -0.996 5.996 13 C 0.102 3.898 14 S 2.600 3.400 15 O -0.998 6.998 16 O -0.990 6.990 17 C -0.601 4.601 18 C -0.073 4.073 19 C -0.106 4.106 20 C -0.082 4.082 21 C -0.144 4.144 22 C 0.082 3.918 23 C -0.184 4.184 24 C -0.078 4.078 25 C -0.111 4.111 26 C 0.047 3.953 27 O -0.325 6.325 28 H 0.040 0.960 29 H 0.043 0.957 30 H 0.066 0.934 31 H 0.264 0.736 32 H 0.035 0.965 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.158 0.842 36 H 0.140 0.860 37 H 0.088 0.912 38 H 0.103 0.897 39 H 0.156 0.844 40 H 0.143 0.857 41 H 0.134 0.866 42 H 0.104 0.896 43 H 0.100 0.900 44 H 0.085 0.915 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.171 5.761 -20.601 22.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.165 3.835 3 H 0.048 0.952 4 C -0.576 4.576 5 H 0.070 0.930 6 C -0.182 4.182 7 N -0.553 5.553 8 Si 0.778 3.222 9 H -0.209 1.209 10 H -0.203 1.203 11 H -0.193 1.193 12 N -0.834 5.834 13 C -0.044 4.044 14 S 2.699 3.301 15 O -0.989 6.989 16 O -0.980 6.980 17 C -0.733 4.733 18 C -0.111 4.111 19 C -0.108 4.108 20 C -0.100 4.100 21 C -0.162 4.162 22 C 0.037 3.963 23 C -0.185 4.185 24 C -0.096 4.096 25 C -0.148 4.148 26 C -0.027 4.027 27 O -0.239 6.239 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.054 0.946 33 H 0.095 0.905 34 H 0.105 0.895 35 H 0.177 0.823 36 H 0.158 0.842 37 H 0.106 0.894 38 H 0.121 0.879 39 H 0.173 0.827 40 H 0.161 0.839 41 H 0.151 0.849 42 H 0.123 0.877 43 H 0.119 0.881 44 H 0.103 0.897 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -5.372 5.864 -20.638 22.117 hybrid contribution -0.259 -0.093 1.194 1.225 sum -5.631 5.772 -19.444 21.050 Atomic orbital electron populations 1.21973 0.96853 1.00412 1.00756 1.18423 0.92106 0.91651 0.81298 0.95215 1.21653 1.31363 1.12877 0.91687 0.92991 1.25599 0.95298 0.95778 1.01522 1.69958 1.37364 1.23661 1.24279 0.85652 0.77993 0.79153 0.79401 1.20914 1.20275 1.19326 1.57295 1.70646 1.20703 1.34725 1.21351 1.01349 0.80487 1.01193 1.05017 0.76265 0.73897 0.74938 1.93536 1.74633 1.61627 1.69081 1.93495 1.69154 1.56956 1.78405 1.30545 1.16550 1.12994 1.13194 1.20346 0.96363 1.00145 0.94271 1.19505 0.99961 0.94857 0.96442 1.21071 0.95777 1.00557 0.92573 1.20505 1.00851 0.92299 1.02565 1.19877 0.92361 0.92836 0.91244 1.21066 1.02062 0.97909 0.97486 1.20452 0.95538 0.94983 0.98667 1.21904 0.96886 0.94236 1.01744 1.24101 0.96083 0.90382 0.92160 1.86783 1.56305 1.44159 1.36696 0.94100 0.93768 0.91502 0.92660 0.94616 0.90472 0.89541 0.82350 0.84195 0.89353 0.87884 0.82673 0.83902 0.84855 0.87722 0.88128 0.89702 0.85103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.10 8.95 71.98 0.64 -5.45 16 2 C 0.27 13.04 2.57 44.25 0.11 13.16 16 3 H 0.03 1.62 6.87 -2.39 -0.02 1.61 16 4 C -0.54 -29.29 8.37 25.60 0.21 -29.08 16 5 H 0.05 2.86 7.65 -2.91 -0.02 2.84 16 6 C 0.02 0.97 5.30 84.66 0.45 1.42 16 7 N -0.91 -51.12 11.32 21.45 0.24 -50.87 16 8 Si 0.95 43.65 29.54 68.60 2.03 45.67 16 9 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 10 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 11 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 12 N -1.00 -39.65 2.99 -520.44 -1.56 -41.21 16 13 C 0.10 3.41 9.44 127.77 1.21 4.62 16 14 S 2.60 93.50 5.36 -56.49 -0.30 93.19 16 15 O -1.00 -45.42 16.58 -127.65 -2.12 -47.54 16 16 O -0.99 -37.87 17.09 -127.65 -2.18 -40.05 16 17 C -0.60 -14.44 6.16 71.98 0.44 -14.00 16 18 C -0.07 -1.57 5.36 29.85 0.16 -1.41 16 19 C -0.11 -2.21 5.14 -19.83 -0.10 -2.31 16 20 C -0.08 -1.51 9.68 22.21 0.21 -1.30 16 21 C -0.14 -2.79 10.06 22.45 0.23 -2.56 16 22 C 0.08 1.77 7.04 22.68 0.16 1.92 16 23 C -0.18 -3.76 6.27 -19.53 -0.12 -3.88 16 24 C -0.08 -1.66 9.70 22.18 0.22 -1.45 16 25 C -0.11 -1.55 7.12 30.73 0.22 -1.33 16 26 C 0.05 0.60 8.01 72.57 0.58 1.18 16 27 O -0.32 -6.64 11.10 -95.11 -1.06 -7.70 16 28 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.04 1.79 6.66 -2.38 -0.02 1.78 16 30 H 0.07 3.30 6.07 -2.39 -0.01 3.28 16 31 H 0.26 14.05 8.31 -92.70 -0.77 13.28 16 32 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.08 2.47 6.43 -2.39 -0.02 2.46 16 34 H 0.09 2.21 7.79 -2.39 -0.02 2.19 16 35 H 0.16 2.92 8.14 -2.39 -0.02 2.90 16 36 H 0.14 3.31 8.14 -2.39 -0.02 3.29 16 37 H 0.09 1.90 8.09 -2.38 -0.02 1.88 16 38 H 0.10 1.90 8.09 -2.39 -0.02 1.88 16 39 H 0.16 2.09 8.06 -2.91 -0.02 2.07 16 40 H 0.14 2.23 8.06 -2.91 -0.02 2.20 16 41 H 0.13 2.59 8.06 -2.91 -0.02 2.56 16 42 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.13 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -73.66 379.72 0.66 -73.00 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: 0.98 Total: 15.99 kcal Atomic # 6 Polarization: -45.10 SS G_CDS: 4.62 Total: -40.48 kcal Atomic # 7 Polarization: -90.77 SS G_CDS: -1.32 Total: -92.08 kcal Atomic # 8 Polarization: -89.94 SS G_CDS: -5.35 Total: -95.29 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.67 kcal Atomic # 16 Polarization: 93.50 SS G_CDS: -0.30 Total: 93.19 kcal Total: -73.66 0.66 -73.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189429555.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.462 kcal (2) G-P(sol) polarization free energy of solvation -73.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds