Wall clock time and date at job start Sat Apr 11 2020 05:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46821 * 2 1 4 4 C 1.50698 * 109.47254 * 119.99584 * 2 1 3 5 5 H 1.08001 * 119.99810 * 120.00346 * 4 2 1 6 6 C 1.37871 * 119.99883 * 300.00593 * 4 2 1 7 7 N 1.31523 * 120.00041 * 180.02562 * 6 4 2 8 8 Si 1.86800 * 120.00377 * 359.97438 * 6 4 2 9 9 H 1.48498 * 109.46925 * 90.00223 * 8 6 4 10 10 H 1.48497 * 109.47251 * 210.00352 * 8 6 4 11 11 H 1.48494 * 109.47073 * 330.00453 * 8 6 4 12 12 N 1.46496 * 109.47129 * 240.00164 * 2 1 3 13 13 C 1.34777 * 120.00258 * 85.00009 * 12 2 1 14 14 O 1.21279 * 120.00166 * 359.97438 * 13 12 2 15 15 C 1.50706 * 119.99762 * 179.97438 * 13 12 2 16 16 S 1.81408 * 109.46846 * 179.97438 * 15 13 12 17 17 O 1.42103 * 108.57480 * 294.48636 * 16 15 13 18 18 O 1.42099 * 108.57744 * 65.51242 * 16 15 13 19 19 C 1.81396 * 101.92059 * 180.02562 * 16 15 13 20 20 C 1.52994 * 109.47250 * 179.97438 * 19 16 15 21 21 C 1.52995 * 109.47515 * 179.97438 * 20 19 16 22 22 C 1.50700 * 109.47531 * 179.97438 * 21 20 19 23 23 C 1.38234 * 120.00243 * 269.73492 * 22 21 20 24 24 C 1.38232 * 119.99749 * 179.76498 * 23 22 21 25 25 C 1.38230 * 120.00497 * 0.50095 * 24 23 22 26 26 C 1.38241 * 119.99455 * 359.74959 * 25 24 23 27 27 C 1.38224 * 120.00241 * 359.97438 * 26 25 24 28 28 H 1.08992 * 109.47302 * 300.00204 * 1 2 3 29 29 H 1.09006 * 109.47229 * 60.00541 * 1 2 3 30 30 H 1.09002 * 109.46821 * 179.97438 * 1 2 3 31 31 H 0.96995 * 120.00237 * 179.97438 * 7 6 4 32 32 H 0.96999 * 119.99694 * 264.99399 * 12 2 1 33 33 H 1.09000 * 109.47318 * 299.99141 * 15 13 12 34 34 H 1.09000 * 109.47161 * 59.99772 * 15 13 12 35 35 H 1.09004 * 109.46725 * 299.99690 * 19 16 15 36 36 H 1.08999 * 109.47425 * 59.99896 * 19 16 15 37 37 H 1.08998 * 109.46852 * 300.00231 * 20 19 16 38 38 H 1.09004 * 109.47387 * 59.99405 * 20 19 16 39 39 H 1.08996 * 109.47036 * 300.00236 * 21 20 19 40 40 H 1.08999 * 109.47003 * 59.99996 * 21 20 19 41 41 H 1.08004 * 119.99686 * 359.97438 * 23 22 21 42 42 H 1.08007 * 119.99904 * 180.22406 * 24 23 22 43 43 H 1.07999 * 120.00816 * 179.72588 * 25 24 23 44 44 H 1.08006 * 119.99745 * 179.97438 * 26 25 24 45 45 H 1.08005 * 119.99856 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6992 -0.2392 2.4827 7 7 2.1380 -0.8588 3.5566 8 14 0.6257 1.2799 2.6540 9 1 -0.8021 0.8744 2.6992 10 1 0.9770 1.9955 3.9069 11 1 0.8488 2.1773 1.4922 12 7 2.0183 -0.6906 -1.1962 13 6 2.1471 -0.0182 -2.3571 14 8 1.8582 1.1584 -2.4118 15 6 2.6500 -0.7286 -3.5874 16 16 2.7102 0.4368 -4.9764 17 8 1.3830 0.8366 -5.2897 18 8 3.6852 1.4305 -4.6916 19 6 3.3292 -0.6130 -6.3199 20 6 3.4477 0.2150 -7.6009 21 6 3.9704 -0.6703 -8.7340 22 6 4.0865 0.1451 -9.9960 23 6 3.0175 0.2238 -10.8689 24 6 3.1224 0.9757 -12.0240 25 6 4.2997 1.6405 -12.3115 26 6 5.3705 1.5576 -11.4411 27 6 5.2637 0.8104 -10.2832 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.9040 -0.5272 4.4375 32 1 2.2491 -1.6317 -1.1525 33 1 3.6494 -1.1203 -3.3979 34 1 1.9778 -1.5509 -3.8325 35 1 4.3087 -1.0081 -6.0503 36 1 2.6370 -1.4388 -6.4841 37 1 2.4680 0.6097 -7.8702 38 1 4.1397 1.0411 -7.4370 39 1 4.9501 -1.0647 -8.4644 40 1 3.2787 -1.4966 -8.8981 41 1 2.0992 -0.2995 -10.6466 42 1 2.2859 1.0401 -12.7043 43 1 4.3832 2.2244 -13.2162 44 1 6.2906 2.0768 -11.6659 45 1 6.1005 0.7453 -9.6034 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194642181.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:48 Heat of formation + Delta-G solvation = -118.785001 kcal Electronic energy + Delta-G solvation = -26072.866677 eV Core-core repulsion = 22181.266107 eV Total energy + Delta-G solvation = -3891.600570 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.85410 -40.16356 -37.98832 -37.11869 -36.93138 -36.18358 -34.51657 -32.66298 -32.19277 -31.73263 -30.43766 -27.72028 -27.25635 -23.91444 -23.43471 -23.19666 -21.74557 -21.49560 -19.84557 -19.29415 -18.19979 -17.91621 -17.60929 -17.41950 -16.98266 -16.88125 -16.51379 -16.04583 -15.97687 -15.76817 -15.28967 -15.01072 -14.78455 -14.56315 -14.22509 -14.17607 -14.07002 -13.91143 -13.62324 -13.21814 -13.21629 -13.20092 -13.01207 -12.98675 -12.86910 -12.83359 -12.18641 -12.04026 -12.02081 -11.90589 -11.70262 -11.60726 -11.36750 -11.32747 -11.14156 -10.90086 -10.05569 -9.79164 -9.57368 -8.41216 -6.47044 -1.08578 0.47300 0.53064 1.24661 1.34130 1.43052 1.46371 1.83277 2.11287 2.23583 2.85181 2.94668 2.96464 3.09632 3.54183 3.60479 3.82182 4.00569 4.09977 4.11367 4.20843 4.24898 4.32934 4.34188 4.41145 4.44507 4.51288 4.64819 4.65225 4.70327 4.70959 4.82559 4.95006 5.01761 5.14969 5.22592 5.25263 5.27373 5.35791 5.51440 5.60918 5.66334 5.75160 6.05394 6.16765 6.52585 6.63566 7.11151 7.27555 8.73404 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.037477 B = 0.001868 C = 0.001853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.947182 B =14982.279456 C =15104.692722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.233 3.767 3 H 0.022 0.978 4 C -0.532 4.532 5 H 0.065 0.935 6 C 0.033 3.967 7 N -0.928 5.928 8 Si 0.932 3.068 9 H -0.258 1.258 10 H -0.291 1.291 11 H -0.268 1.268 12 N -0.684 5.684 13 C 0.515 3.485 14 O -0.598 6.598 15 C -0.643 4.643 16 S 2.423 3.577 17 O -0.977 6.977 18 O -0.981 6.981 19 C -0.577 4.577 20 C -0.120 4.120 21 C -0.067 4.067 22 C -0.099 4.099 23 C -0.132 4.132 24 C -0.132 4.132 25 C -0.137 4.137 26 C -0.132 4.132 27 C -0.132 4.132 28 H 0.042 0.958 29 H 0.044 0.956 30 H 0.072 0.928 31 H 0.271 0.729 32 H 0.416 0.584 33 H 0.203 0.797 34 H 0.208 0.792 35 H 0.178 0.822 36 H 0.180 0.820 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.135 0.865 42 H 0.136 0.864 43 H 0.135 0.865 44 H 0.135 0.865 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.013 -5.832 -31.937 32.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.128 3.872 3 H 0.040 0.960 4 C -0.570 4.570 5 H 0.083 0.917 6 C -0.168 4.168 7 N -0.567 5.567 8 Si 0.760 3.240 9 H -0.183 1.183 10 H -0.218 1.218 11 H -0.193 1.193 12 N -0.333 5.333 13 C 0.301 3.699 14 O -0.481 6.481 15 C -0.772 4.772 16 S 2.609 3.391 17 O -0.975 6.975 18 O -0.978 6.978 19 C -0.710 4.710 20 C -0.159 4.159 21 C -0.105 4.105 22 C -0.100 4.100 23 C -0.149 4.149 24 C -0.150 4.150 25 C -0.155 4.155 26 C -0.150 4.150 27 C -0.150 4.150 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.253 0.747 33 H 0.221 0.779 34 H 0.225 0.775 35 H 0.195 0.805 36 H 0.197 0.803 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.114 0.886 40 H 0.116 0.884 41 H 0.153 0.847 42 H 0.154 0.846 43 H 0.153 0.847 44 H 0.153 0.847 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 4.560 -4.126 -31.680 32.271 hybrid contribution -0.181 -0.171 0.867 0.902 sum 4.379 -4.297 -30.813 31.418 Atomic orbital electron populations 1.22379 0.97590 1.02167 0.99570 1.18905 0.91536 0.93403 0.83322 0.96011 1.21191 1.32553 1.13772 0.89529 0.91728 1.25484 0.96753 0.99059 0.95471 1.69951 1.46406 1.41725 0.98624 0.86102 0.80093 0.80644 0.77157 1.18320 1.21804 1.19286 1.45875 1.64247 1.14676 1.08528 1.20170 0.77718 0.86554 0.85503 1.90804 1.53536 1.18011 1.85785 1.30775 1.15645 1.19483 1.11261 1.07795 0.74644 0.78227 0.78458 1.93506 1.39084 1.81199 1.83665 1.93510 1.62881 1.56648 1.84732 1.30175 1.16495 1.14095 1.10236 1.21437 1.03220 0.98560 0.92696 1.20594 1.03986 0.96701 0.89256 1.20168 0.94106 0.98769 0.96912 1.21393 0.99007 0.99828 0.94716 1.21465 0.98471 0.97317 0.97708 1.21466 0.93633 1.00037 1.00370 1.21462 0.99605 0.99158 0.94771 1.21391 0.98179 0.97667 0.97794 0.93960 0.93707 0.90874 0.91962 0.74656 0.77938 0.77481 0.80461 0.80254 0.90850 0.91018 0.88573 0.88445 0.84686 0.84639 0.84681 0.84707 0.84812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.97 8.96 71.98 0.65 -6.32 16 2 C 0.23 11.10 2.15 44.25 0.10 11.20 16 3 H 0.02 1.18 6.63 -2.39 -0.02 1.17 16 4 C -0.53 -28.49 9.31 25.60 0.24 -28.25 16 5 H 0.06 3.59 7.98 -2.91 -0.02 3.57 16 6 C 0.03 1.83 5.45 84.65 0.46 2.29 16 7 N -0.93 -54.83 13.96 21.45 0.30 -54.53 16 8 Si 0.93 45.00 24.37 68.60 1.67 46.67 16 9 H -0.26 -11.62 6.87 99.48 0.68 -10.94 16 10 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 11 H -0.27 -13.15 6.53 99.48 0.65 -12.50 16 12 N -0.68 -25.57 5.07 -446.10 -2.26 -27.84 16 13 C 0.51 18.58 7.81 87.66 0.68 19.26 16 14 O -0.60 -28.36 15.29 -0.16 0.00 -28.37 16 15 C -0.64 -11.99 6.29 71.24 0.45 -11.54 16 16 S 2.42 56.98 3.96 -56.49 -0.22 56.76 16 17 O -0.98 -32.22 17.95 -125.76 -2.26 -34.48 16 18 O -0.98 -33.31 17.95 -125.74 -2.26 -35.57 16 19 C -0.58 -4.62 5.81 71.98 0.42 -4.21 16 20 C -0.12 -1.53 5.20 30.59 0.16 -1.37 16 21 C -0.07 -0.58 5.35 29.85 0.16 -0.42 16 22 C -0.10 -1.34 5.13 -19.87 -0.10 -1.44 16 23 C -0.13 -1.78 9.70 22.27 0.22 -1.57 16 24 C -0.13 -1.75 10.05 22.27 0.22 -1.52 16 25 C -0.14 -1.80 10.05 22.27 0.22 -1.58 16 26 C -0.13 -1.78 10.05 22.27 0.22 -1.56 16 27 C -0.13 -1.83 9.70 22.27 0.22 -1.61 16 28 H 0.04 1.90 3.27 -2.39 -0.01 1.89 16 29 H 0.04 1.89 8.14 -2.38 -0.02 1.87 16 30 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 31 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 32 H 0.42 12.38 8.54 -92.71 -0.79 11.59 16 33 H 0.20 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.21 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.18 0.11 8.14 -2.39 -0.02 0.09 16 36 H 0.18 0.01 8.14 -2.39 -0.02 -0.01 16 37 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 39 H 0.10 0.52 8.09 -2.39 -0.02 0.50 16 40 H 0.10 0.49 8.08 -2.39 -0.02 0.47 16 41 H 0.14 1.36 8.06 -2.91 -0.02 1.34 16 42 H 0.14 1.27 8.06 -2.91 -0.02 1.25 16 43 H 0.14 1.23 8.06 -2.91 -0.02 1.21 16 44 H 0.14 1.31 8.06 -2.91 -0.02 1.29 16 45 H 0.13 1.42 8.06 -2.91 -0.02 1.40 16 Total: -1.00 -91.55 386.38 -0.60 -92.15 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: 0.12 Total: 13.84 kcal Atomic # 6 Polarization: -32.95 SS G_CDS: 4.31 Total: -28.64 kcal Atomic # 7 Polarization: -80.40 SS G_CDS: -1.96 Total: -82.36 kcal Atomic # 8 Polarization: -93.90 SS G_CDS: -4.52 Total: -98.41 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 1.67 Total: 46.67 kcal Atomic # 16 Polarization: 56.98 SS G_CDS: -0.22 Total: 56.76 kcal Total: -91.55 -0.60 -92.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194642181.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.640 kcal (2) G-P(sol) polarization free energy of solvation -91.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds