Wall clock time and date at job start Sat Apr 11 2020 05:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47264 * 77.32220 * 3 2 1 5 5 C 1.46496 * 120.00196 * 269.99903 * 4 3 2 6 6 C 1.47205 * 109.46959 * 269.99666 * 5 4 3 7 7 C 5.38486 * 150.85941 * 26.48954 * 2 1 3 8 8 C 1.34783 * 119.99661 * 89.99420 * 4 3 2 9 9 O 1.21723 * 119.99382 * 180.02562 * 8 4 3 10 10 C 1.46245 * 120.00474 * 0.02562 * 8 4 3 11 11 C 1.35031 * 120.00500 * 186.78431 * 10 8 4 12 12 C 1.46962 * 119.99309 * 11.45436 * 11 10 8 13 13 C 1.40027 * 120.08251 * 43.41538 * 12 11 10 14 14 C 1.37646 * 120.00100 * 179.97438 * 13 12 11 15 15 C 1.39057 * 120.16133 * 0.24633 * 14 13 12 16 16 O 1.35618 * 119.92203 * 179.74667 * 15 14 13 17 17 C 1.34762 * 116.99801 * 5.90082 * 16 15 14 18 18 H 1.07999 * 119.99995 * 5.33878 * 17 16 15 19 19 C 1.38700 * 120.00113 * 185.34161 * 17 16 15 20 20 N 1.31518 * 119.99704 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00228 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47343 * 60.00022 * 21 19 17 23 23 H 1.48504 * 109.47220 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47091 * 299.99699 * 21 19 17 25 25 C 1.39628 * 120.16014 * 359.49720 * 15 14 13 26 26 O 1.35947 * 120.00105 * 180.27810 * 25 15 14 27 27 C 1.42905 * 116.99862 * 180.23180 * 26 25 15 28 28 C 1.38078 * 119.99316 * 0.50602 * 25 15 14 29 29 H 4.40637 * 5.51355 * 180.02562 * 4 1 2 30 30 H 1.08999 * 109.47834 * 317.31656 * 3 2 1 31 31 H 1.09008 * 109.46829 * 197.32207 * 3 2 1 32 32 H 1.08994 * 109.47167 * 29.99516 * 5 4 3 33 33 H 1.09001 * 109.47455 * 149.99941 * 5 4 3 34 34 H 6.33347 * 154.04974 * 19.87255 * 2 1 3 35 35 H 1.08000 * 120.00001 * 6.77373 * 10 8 4 36 36 H 1.07995 * 120.00383 * 191.46099 * 11 10 8 37 37 H 1.08000 * 119.99774 * 359.97438 * 13 12 11 38 38 H 1.07998 * 119.91998 * 179.97438 * 14 13 12 39 39 H 0.97004 * 119.99829 * 180.02562 * 20 19 17 40 40 H 1.08996 * 109.47015 * 179.97438 * 27 26 25 41 41 H 1.09000 * 109.46998 * 299.99893 * 27 26 25 42 42 H 1.09001 * 109.46871 * 59.99537 * 27 26 25 43 43 H 1.07994 * 120.07979 * 179.72984 * 28 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1345 -0.3023 -1.3475 5 6 3.3793 -1.6914 -1.7429 6 6 4.7698 -2.0545 -1.4240 7 6 5.8773 -2.3469 -1.1696 8 6 3.3586 0.6972 -2.2236 9 8 3.7640 0.4455 -3.3433 10 6 3.1146 2.0841 -1.8288 11 6 3.2065 3.0728 -2.7439 12 6 3.3005 2.7444 -4.1733 13 6 2.4785 1.7520 -4.7210 14 6 2.5675 1.4461 -6.0601 15 6 3.4763 2.1171 -6.8711 16 8 3.5637 1.8083 -8.1887 17 6 2.6610 0.9326 -8.6730 18 1 1.8605 0.5772 -8.0410 19 6 2.7600 0.4877 -9.9829 20 7 3.7345 0.9208 -10.7526 21 14 1.5083 -0.7255 -10.6544 22 1 0.1507 -0.1284 -10.5800 23 1 1.8341 -1.0411 -12.0685 24 1 1.5456 -1.9722 -9.8484 25 6 4.2956 3.1116 -6.3331 26 8 5.1789 3.7694 -7.1300 27 6 5.9890 4.7713 -6.5118 28 6 4.2117 3.4236 -4.9906 29 1 -1.0499 0.0002 -0.0001 30 1 3.0098 -0.7546 0.6967 31 1 3.0089 0.9820 0.3060 32 1 2.6989 -2.3486 -1.2014 33 1 3.2124 -1.7991 -2.8146 34 1 6.8689 -2.6064 -0.9421 35 1 2.8608 2.3176 -0.8054 36 1 3.2110 4.1047 -2.4255 37 1 1.7745 1.2265 -4.0927 38 1 1.9332 0.6802 -6.4811 39 1 3.8035 0.6099 -11.6689 40 1 6.6479 5.2167 -7.2572 41 1 5.3490 5.5432 -6.0844 42 1 6.5882 4.3178 -5.7222 43 1 4.8477 4.1895 -4.5722 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255009962.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:59 Heat of formation + Delta-G solvation = 89.221922 kcal Electronic energy + Delta-G solvation = -28341.618460 eV Core-core repulsion = 24323.593796 eV Total energy + Delta-G solvation = -4018.024664 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.13198 -39.31409 -37.43550 -36.82771 -35.65841 -33.92891 -32.87355 -32.35373 -32.04772 -29.45413 -28.86022 -28.06343 -26.81263 -26.11822 -25.23939 -23.03435 -21.46836 -20.91999 -19.29697 -18.67548 -18.00461 -17.93174 -17.49275 -16.88877 -16.24447 -15.98549 -15.34088 -15.19501 -15.01838 -14.57060 -14.20264 -13.99150 -13.87388 -13.62837 -13.51529 -13.40903 -13.34813 -13.15804 -13.00183 -12.56032 -12.23479 -11.65310 -11.40880 -11.35162 -11.02789 -10.95354 -10.90214 -10.64081 -10.58706 -10.53206 -10.38003 -10.26751 -10.21788 -9.51806 -9.32890 -9.15334 -9.02168 -8.64613 -7.70358 -6.62597 -6.41430 -3.93713 1.17035 2.10437 2.35795 2.58384 2.66953 2.74433 2.79352 3.16039 3.18525 3.20112 3.50740 3.52823 3.99523 4.12594 4.13581 4.37556 4.64947 4.72713 4.89444 5.03795 5.13302 5.20223 5.22601 5.28987 5.52808 5.55552 5.61123 5.64205 5.69649 5.76020 5.86370 5.87026 5.92714 6.16788 6.29981 6.38348 6.47361 6.58095 6.73461 7.04902 7.18046 7.30163 7.32698 7.38439 7.49138 7.54047 7.72951 8.00267 8.29771 8.40289 9.02725 9.75392 10.75670 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009650 B = 0.003412 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2900.844667 B = 8205.457389 C = 9391.066829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.211 4.211 3 C 0.221 3.779 4 N -0.613 5.613 5 C 0.223 3.777 6 C -0.199 4.199 7 C -0.193 4.193 8 C 0.545 3.455 9 O -0.497 6.497 10 C -0.266 4.266 11 C 0.030 3.970 12 C -0.162 4.162 13 C -0.007 4.007 14 C -0.223 4.223 15 C 0.153 3.847 16 O -0.157 6.157 17 C -0.388 4.388 18 H 0.093 0.907 19 C 0.040 3.960 20 N -0.854 5.854 21 Si 0.941 3.059 22 H -0.269 1.269 23 H -0.277 1.277 24 H -0.269 1.269 25 C 0.039 3.961 26 O -0.305 6.305 27 C 0.033 3.967 28 C -0.134 4.134 29 H 0.217 0.783 30 H 0.099 0.901 31 H 0.106 0.894 32 H 0.097 0.903 33 H 0.111 0.889 34 H 0.216 0.784 35 H 0.124 0.876 36 H 0.123 0.877 37 H 0.099 0.901 38 H 0.131 0.869 39 H 0.271 0.729 40 H 0.089 0.911 41 H 0.044 0.956 42 H 0.044 0.956 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.134 0.091 22.349 22.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.213 4.213 3 C 0.099 3.901 4 N -0.347 5.347 5 C 0.102 3.898 6 C -0.200 4.200 7 C -0.211 4.211 8 C 0.337 3.663 9 O -0.371 6.371 10 C -0.287 4.287 11 C 0.010 3.990 12 C -0.163 4.163 13 C -0.025 4.025 14 C -0.242 4.242 15 C 0.098 3.902 16 O -0.059 6.059 17 C -0.464 4.464 18 H 0.110 0.890 19 C -0.165 4.165 20 N -0.487 5.487 21 Si 0.765 3.235 22 H -0.194 1.194 23 H -0.202 1.202 24 H -0.194 1.194 25 C -0.006 4.006 26 O -0.219 6.219 27 C -0.063 4.063 28 C -0.153 4.153 29 H 0.234 0.766 30 H 0.117 0.883 31 H 0.124 0.876 32 H 0.115 0.885 33 H 0.129 0.871 34 H 0.233 0.767 35 H 0.141 0.859 36 H 0.141 0.859 37 H 0.117 0.883 38 H 0.149 0.851 39 H 0.081 0.919 40 H 0.108 0.892 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -1.623 -0.031 21.033 21.095 hybrid contribution -0.556 -0.653 0.292 0.906 sum -2.179 -0.684 21.324 21.446 Atomic orbital electron populations 1.24995 0.95974 1.00488 0.98501 1.23627 0.94981 1.00933 1.01710 1.18397 0.83553 1.03515 0.84685 1.47966 1.67013 1.06087 1.13671 1.18239 0.86719 0.82071 1.02814 1.23582 0.96056 1.00558 0.99815 1.24895 0.96108 0.99021 1.01086 1.18583 0.77627 0.85801 0.84247 1.91026 1.43578 1.83724 1.18770 1.22645 1.13687 0.92225 1.00139 1.22321 0.86770 0.97681 0.92218 1.18020 1.03477 1.03070 0.91721 1.20498 0.96195 0.92345 0.93508 1.20719 1.04525 1.05186 0.93811 1.18824 0.93259 0.92476 0.85652 1.84006 1.49974 1.54907 1.16986 1.21374 1.05983 1.22517 0.96558 0.88995 1.25323 0.97931 0.98028 0.95246 1.70045 1.29922 1.41121 1.07638 0.85784 0.79616 0.79843 0.78222 1.19409 1.20227 1.19430 1.17921 0.96094 0.97089 0.89500 1.86220 1.49697 1.50275 1.35757 1.22849 0.94077 0.90460 0.98946 1.20666 1.01318 1.01817 0.91499 0.76622 0.88329 0.87643 0.88496 0.87134 0.76724 0.85851 0.85947 0.88295 0.85128 0.91896 0.89249 0.93733 0.93766 0.86529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.57 19.25 29.55 0.57 -1.00 16 2 C -0.21 -1.99 13.68 -37.13 -0.51 -2.50 16 3 C 0.22 1.89 5.64 -6.83 -0.04 1.85 16 4 N -0.61 -7.41 2.39 -182.09 -0.44 -7.85 16 5 C 0.22 2.65 5.88 -6.83 -0.04 2.61 16 6 C -0.20 -2.52 13.67 -37.13 -0.51 -3.03 16 7 C -0.19 -2.20 19.25 29.55 0.57 -1.63 16 8 C 0.55 8.38 6.62 -13.04 -0.09 8.29 16 9 O -0.50 -9.91 11.76 5.17 0.06 -9.85 16 10 C -0.27 -3.47 9.13 -37.51 -0.34 -3.81 16 11 C 0.03 0.42 9.80 -37.19 -0.36 0.06 16 12 C -0.16 -3.03 4.54 -105.04 -0.48 -3.51 16 13 C -0.01 -0.14 6.59 -39.13 -0.26 -0.40 16 14 C -0.22 -5.28 9.11 -39.49 -0.36 -5.64 16 15 C 0.15 4.04 6.67 -38.76 -0.26 3.78 16 16 O -0.16 -4.76 9.52 -13.97 -0.13 -4.90 16 17 C -0.39 -11.30 9.44 30.90 0.29 -11.00 16 18 H 0.09 2.46 5.28 -52.49 -0.28 2.19 16 19 C 0.04 1.13 5.49 -17.51 -0.10 1.04 16 20 N -0.85 -25.81 13.67 55.48 0.76 -25.05 16 21 Si 0.94 21.02 29.55 -169.99 -5.02 16.00 16 22 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 23 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 24 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 25 C 0.04 0.91 6.70 -39.12 -0.26 0.65 16 26 O -0.31 -7.06 10.28 -34.19 -0.35 -7.41 16 27 C 0.03 0.52 9.81 101.05 0.99 1.51 16 28 C -0.13 -2.62 8.77 -38.99 -0.34 -2.96 16 29 H 0.22 1.20 7.80 -54.10 -0.42 0.78 16 30 H 0.10 0.65 8.07 -51.93 -0.42 0.23 16 31 H 0.11 0.74 6.02 -51.92 -0.31 0.43 16 32 H 0.10 0.86 8.07 -51.93 -0.42 0.44 16 33 H 0.11 1.53 7.42 -51.93 -0.39 1.14 16 34 H 0.22 1.69 7.80 -54.09 -0.42 1.27 16 35 H 0.12 1.18 6.14 -52.49 -0.32 0.86 16 36 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 37 H 0.10 1.89 7.00 -52.49 -0.37 1.52 16 38 H 0.13 3.07 5.69 -52.49 -0.30 2.77 16 39 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 40 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.04 0.62 7.66 -51.93 -0.40 0.22 16 42 H 0.04 0.64 7.66 -51.93 -0.40 0.25 16 43 H 0.12 1.89 6.28 -52.49 -0.33 1.56 16 LS Contribution 383.95 15.07 5.79 5.79 Total: -1.00 -37.28 383.95 -5.61 -42.89 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -4.75 Total: 6.08 kcal Atomic # 6 Polarization: -14.17 SS G_CDS: -1.52 Total: -15.69 kcal Atomic # 7 Polarization: -33.22 SS G_CDS: 0.32 Total: -32.90 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: -0.42 Total: -22.15 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -37.28 -5.61 -42.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255009962.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.108 kcal (2) G-P(sol) polarization free energy of solvation -37.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds