Wall clock time and date at job start Sat Apr 11 2020 05:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46898 * 109.47195 * 2 1 4 4 C 1.46899 * 111.00098 * 87.05673 * 3 2 1 5 5 C 1.50704 * 109.47159 * 287.02954 * 4 3 2 6 6 C 1.38299 * 119.93318 * 277.20203 * 5 4 3 7 7 C 1.38099 * 120.06870 * 179.72278 * 6 5 4 8 8 C 1.38874 * 119.93001 * 0.54684 * 7 6 5 9 9 O 1.35750 * 120.07188 * 179.74877 * 8 7 6 10 10 C 1.34828 * 117.00531 * 186.19263 * 9 8 7 11 11 H 1.08001 * 119.99620 * 5.73655 * 10 9 8 12 12 C 1.38647 * 120.00280 * 185.74060 * 10 9 8 13 13 N 1.31561 * 120.00209 * 359.97438 * 12 10 9 14 14 Si 1.86806 * 120.00138 * 179.97438 * 12 10 9 15 15 H 1.48493 * 109.46748 * 60.00071 * 14 12 10 16 16 H 1.48498 * 109.47028 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47078 * 299.99863 * 14 12 10 18 18 C 1.38881 * 119.86265 * 359.72770 * 8 7 6 19 19 C 1.38098 * 119.92864 * 359.97438 * 18 8 7 20 20 C 1.46896 * 111.00286 * 211.00839 * 3 2 1 21 21 H 1.09000 * 109.64609 * 186.74451 * 20 3 2 22 22 C 1.53878 * 109.64363 * 66.31646 * 20 3 2 23 23 C 1.55047 * 106.62423 * 192.96539 * 22 20 3 24 24 S 1.83286 * 102.56644 * 42.43538 * 23 22 20 25 25 O 1.42102 * 109.35553 * 90.18505 * 24 23 22 26 26 O 1.42102 * 109.35429 * 223.25454 * 24 23 22 27 27 C 1.54165 * 109.64738 * 307.17624 * 20 3 2 28 28 H 1.09002 * 109.46697 * 293.08540 * 1 2 3 29 29 H 1.08999 * 109.46924 * 53.08606 * 1 2 3 30 30 H 1.09000 * 109.46780 * 173.08776 * 1 2 3 31 31 H 1.09002 * 109.47519 * 240.00224 * 2 1 3 32 32 H 1.09003 * 109.47382 * 119.99521 * 2 1 3 33 33 H 1.09003 * 109.47262 * 47.03134 * 4 3 2 34 34 H 1.09000 * 109.47762 * 167.03261 * 4 3 2 35 35 H 1.08004 * 119.96424 * 359.97438 * 6 5 4 36 36 H 1.08004 * 120.03503 * 180.27231 * 7 6 5 37 37 H 0.96999 * 120.00582 * 179.97438 * 13 12 10 38 38 H 1.08000 * 120.03325 * 180.02562 * 18 8 7 39 39 H 1.08006 * 119.96197 * 180.02562 * 19 18 8 40 40 H 1.08999 * 110.03397 * 312.25958 * 22 20 3 41 41 H 1.09001 * 110.02790 * 73.67768 * 22 20 3 42 42 H 1.09005 * 110.79126 * 160.70217 * 23 22 20 43 43 H 1.08999 * 110.79304 * 283.97326 * 23 22 20 44 44 H 1.09002 * 110.32032 * 266.65894 * 27 20 3 45 45 H 1.08994 * 110.31917 * 28.85797 * 27 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 2.1288 1.9048 1.3696 5 6 0.7502 2.1711 1.9171 6 6 0.1042 3.3557 1.6138 7 6 -1.1614 3.6002 2.1093 8 6 -1.7808 2.6600 2.9223 9 8 -3.0228 2.8996 3.4152 10 6 -3.5134 2.0072 4.2988 11 1 -2.8895 1.2006 4.6546 12 6 -4.8189 2.1250 4.7507 13 7 -5.5788 3.1077 4.3177 14 14 -5.4989 0.8882 5.9745 15 1 -4.6850 0.9218 7.2161 16 1 -6.9068 1.2333 6.2966 17 1 -5.4451 -0.4733 5.3840 18 6 -1.1271 1.4738 3.2298 19 6 0.1359 1.2326 2.7261 20 6 3.3034 1.4895 -0.7065 21 1 3.7042 2.4966 -0.5912 22 6 3.0982 1.1823 -2.2003 23 6 4.5098 0.9834 -2.8101 24 16 5.3575 -0.0226 -1.5339 25 8 5.1597 -1.4017 -1.8133 26 8 6.6727 0.4780 -1.3366 27 6 4.2993 0.4657 -0.1262 28 1 -0.3633 0.4030 0.9454 29 1 -0.3633 0.6172 -0.8217 30 1 -0.3633 -1.0202 -0.1237 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.6337 1.1708 1.9977 34 1 2.7019 2.8319 1.3619 35 1 0.5884 4.0886 0.9853 36 1 -1.6672 4.5236 1.8685 37 1 -6.4922 3.1899 4.6335 38 1 -1.6063 0.7405 3.8615 39 1 0.6446 0.3101 2.9645 40 1 2.5096 0.2724 -2.3169 41 1 2.5954 2.0176 -2.6876 42 1 4.4506 0.4411 -3.7539 43 1 5.0106 1.9418 -2.9472 44 1 4.9024 0.9260 0.6564 45 1 3.7663 -0.4005 0.2656 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264116482.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:11 Heat of formation + Delta-G solvation = -55.611730 kcal Electronic energy + Delta-G solvation = -27422.099687 eV Core-core repulsion = 23533.238516 eV Total energy + Delta-G solvation = -3888.861171 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -39.78532 -38.74284 -37.38168 -36.68200 -36.34985 -34.35136 -32.33999 -31.19729 -30.37126 -30.12686 -28.50212 -26.01105 -25.22430 -23.99229 -22.79599 -21.99941 -20.56828 -20.04404 -19.15872 -18.01636 -17.26939 -17.19246 -16.93255 -16.05374 -15.90032 -15.29044 -15.10071 -14.62022 -14.55116 -14.49367 -14.14418 -13.71264 -13.62958 -13.50158 -12.92899 -12.87401 -12.71691 -12.61200 -12.54341 -12.48114 -12.36294 -12.08922 -12.08062 -11.75349 -11.52272 -11.35049 -11.20456 -11.06806 -11.03800 -10.73681 -10.65377 -10.60927 -10.45492 -10.23397 -9.40453 -8.84256 -8.51910 -8.14904 -7.19963 -6.48601 -4.07526 -0.34296 2.13922 2.17334 2.22839 3.10460 3.10749 3.14274 3.18944 3.50554 3.72591 3.93512 4.05244 4.19455 4.28604 4.37820 4.55991 4.58242 4.86183 5.02362 5.06980 5.09941 5.20458 5.22210 5.24323 5.34693 5.38190 5.50947 5.57838 5.67174 5.69176 5.72474 5.82481 5.97119 6.16130 6.22348 6.36451 6.62291 6.66028 6.83085 6.89666 6.94173 7.05361 7.22593 7.34674 7.40813 7.78473 7.96080 8.96960 9.67068 10.69234 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.029139 B = 0.002233 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.683321 B =12537.824755 C =12838.988134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.046 3.954 3 N -0.514 5.514 4 C 0.112 3.888 5 C -0.179 4.179 6 C -0.050 4.050 7 C -0.196 4.196 8 C 0.157 3.843 9 O -0.177 6.177 10 C -0.392 4.392 11 H 0.091 0.909 12 C 0.040 3.960 13 N -0.862 5.862 14 Si 0.940 3.060 15 H -0.270 1.270 16 H -0.278 1.278 17 H -0.270 1.270 18 C -0.236 4.236 19 C -0.060 4.060 20 C 0.093 3.907 21 H 0.105 0.895 22 C -0.115 4.115 23 C -0.586 4.586 24 S 2.388 3.612 25 O -0.939 6.939 26 O -0.942 6.942 27 C -0.637 4.637 28 H 0.085 0.915 29 H 0.059 0.941 30 H 0.048 0.952 31 H 0.066 0.934 32 H 0.041 0.959 33 H 0.039 0.961 34 H 0.074 0.926 35 H 0.110 0.890 36 H 0.115 0.885 37 H 0.271 0.729 38 H 0.125 0.875 39 H 0.102 0.898 40 H 0.091 0.909 41 H 0.106 0.894 42 H 0.138 0.862 43 H 0.139 0.861 44 H 0.141 0.859 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.057 -4.068 -11.417 21.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.081 4.081 3 N -0.237 5.237 4 C -0.015 4.015 5 C -0.180 4.180 6 C -0.068 4.068 7 C -0.215 4.215 8 C 0.103 3.897 9 O -0.080 6.080 10 C -0.468 4.468 11 H 0.108 0.892 12 C -0.165 4.165 13 N -0.497 5.497 14 Si 0.765 3.235 15 H -0.195 1.195 16 H -0.203 1.203 17 H -0.195 1.195 18 C -0.256 4.256 19 C -0.079 4.079 20 C -0.018 4.018 21 H 0.123 0.877 22 C -0.154 4.154 23 C -0.716 4.716 24 S 2.571 3.429 25 O -0.936 6.936 26 O -0.939 6.939 27 C -0.769 4.769 28 H 0.104 0.896 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.085 0.915 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.092 0.908 35 H 0.128 0.872 36 H 0.133 0.867 37 H 0.081 0.919 38 H 0.143 0.857 39 H 0.120 0.880 40 H 0.110 0.890 41 H 0.125 0.875 42 H 0.156 0.844 43 H 0.157 0.843 44 H 0.159 0.841 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 18.077 -4.129 -11.703 21.927 hybrid contribution -0.449 -0.718 1.128 1.410 sum 17.628 -4.847 -10.576 21.121 Atomic orbital electron populations 1.22141 0.93764 1.00950 1.05139 1.22245 0.97536 0.88117 1.00235 1.62245 1.23283 1.20977 1.17157 1.20913 0.94918 0.99044 0.86605 1.18972 0.96982 0.96856 1.05205 1.20401 0.93444 0.95891 0.97098 1.20202 0.96344 1.00267 1.04717 1.19412 0.86384 0.92417 0.91490 1.83995 1.24625 1.46875 1.52514 1.21251 0.97031 1.09104 1.19401 0.89199 1.25284 0.95004 0.97750 0.98427 1.70024 1.08279 1.29458 1.41891 0.85798 0.78304 0.79648 0.79792 1.19510 1.20258 1.19502 1.21110 0.96963 0.99404 1.08083 1.20499 0.94357 0.97144 0.95865 1.22290 0.88509 0.98148 0.92838 0.87712 1.22324 0.93818 1.05946 0.93316 1.30608 1.09244 1.15825 1.15924 1.09064 0.76870 0.76780 0.80187 1.93624 1.86950 1.29570 1.83424 1.93612 1.33869 1.81719 1.84710 1.31303 1.15276 1.11504 1.18795 0.89609 0.92156 0.93254 0.91530 0.94087 0.94326 0.90754 0.87159 0.86675 0.91929 0.85702 0.88009 0.89021 0.87507 0.84363 0.84308 0.84096 0.84059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.07 9.68 37.16 0.36 -1.71 16 2 C 0.05 0.48 4.00 -3.82 -0.02 0.46 16 3 N -0.51 -5.12 4.34 -226.80 -0.98 -6.10 16 4 C 0.11 1.26 4.68 -4.97 -0.02 1.23 16 5 C -0.18 -2.69 4.08 -104.58 -0.43 -3.12 16 6 C -0.05 -0.81 9.72 -39.61 -0.38 -1.20 16 7 C -0.20 -3.92 9.99 -39.40 -0.39 -4.32 16 8 C 0.16 3.62 6.65 -39.11 -0.26 3.36 16 9 O -0.18 -4.92 9.76 0.05 0.00 -4.92 16 10 C -0.39 -10.68 9.43 30.88 0.29 -10.39 16 11 H 0.09 2.26 5.31 -52.49 -0.28 1.98 16 12 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 13 N -0.86 -24.88 13.67 55.48 0.76 -24.13 16 14 Si 0.94 20.14 29.55 -169.99 -5.02 15.12 16 15 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 16 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 17 H -0.27 -5.60 7.11 56.52 0.40 -5.19 16 18 C -0.24 -4.82 9.07 -39.39 -0.36 -5.18 16 19 C -0.06 -0.99 6.76 -39.61 -0.27 -1.26 16 20 C 0.09 0.65 2.58 -66.65 -0.17 0.48 16 21 H 0.10 0.59 7.84 -51.93 -0.41 0.18 16 22 C -0.12 -0.66 5.86 -25.19 -0.15 -0.81 16 23 C -0.59 -2.67 7.31 38.24 0.28 -2.40 16 24 S 2.39 17.64 6.10 -107.50 -0.66 16.98 16 25 O -0.94 -10.45 18.14 -57.73 -1.05 -11.50 16 26 O -0.94 -10.23 18.15 -57.73 -1.05 -11.28 16 27 C -0.64 -4.11 6.00 37.77 0.23 -3.89 16 28 H 0.09 1.31 3.81 -51.93 -0.20 1.11 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.57 5.64 -51.93 -0.29 0.28 16 32 H 0.04 0.42 6.88 -51.93 -0.36 0.06 16 33 H 0.04 0.41 7.44 -51.93 -0.39 0.02 16 34 H 0.07 0.74 7.77 -51.93 -0.40 0.34 16 35 H 0.11 1.53 8.06 -52.48 -0.42 1.11 16 36 H 0.12 2.26 8.06 -52.48 -0.42 1.84 16 37 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 38 H 0.13 2.60 5.73 -52.49 -0.30 2.30 16 39 H 0.10 1.47 8.05 -52.48 -0.42 1.04 16 40 H 0.09 0.55 6.12 -51.93 -0.32 0.23 16 41 H 0.11 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.14 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.14 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.14 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.14 0.96 5.91 -51.93 -0.31 0.65 16 LS Contribution 366.12 15.07 5.52 5.52 Total: -1.00 -34.79 366.12 -10.06 -44.85 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -6.19 Total: 3.21 kcal Atomic # 6 Polarization: -26.36 SS G_CDS: -1.39 Total: -27.75 kcal Atomic # 7 Polarization: -30.00 SS G_CDS: -0.23 Total: -30.23 kcal Atomic # 8 Polarization: -25.60 SS G_CDS: -2.09 Total: -27.70 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Atomic # 16 Polarization: 17.64 SS G_CDS: -0.66 Total: 16.98 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.79 -10.06 -44.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264116482.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.763 kcal (2) G-P(sol) polarization free energy of solvation -34.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds