Wall clock time and date at job start Sat Apr 11 2020 05:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46898 * 109.47195 * 2 1 4 4 C 1.46899 * 111.00098 * 87.05673 * 3 2 1 5 5 C 1.50704 * 109.47159 * 287.02954 * 4 3 2 6 6 C 1.38299 * 119.93318 * 277.20203 * 5 4 3 7 7 C 1.38099 * 120.06870 * 179.72278 * 6 5 4 8 8 C 1.38874 * 119.93001 * 0.54684 * 7 6 5 9 9 O 1.35750 * 120.07188 * 179.74877 * 8 7 6 10 10 C 1.34828 * 117.00531 * 186.19263 * 9 8 7 11 11 H 1.08001 * 119.99620 * 5.73655 * 10 9 8 12 12 C 1.38647 * 120.00280 * 185.74060 * 10 9 8 13 13 N 1.31561 * 120.00209 * 359.97438 * 12 10 9 14 14 Si 1.86806 * 120.00138 * 179.97438 * 12 10 9 15 15 H 1.48493 * 109.46748 * 60.00071 * 14 12 10 16 16 H 1.48498 * 109.47028 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47078 * 299.99863 * 14 12 10 18 18 C 1.38881 * 119.86265 * 359.72770 * 8 7 6 19 19 C 1.38098 * 119.92864 * 359.97438 * 18 8 7 20 20 C 1.46896 * 111.00286 * 211.00839 * 3 2 1 21 21 H 1.09000 * 109.64609 * 186.74451 * 20 3 2 22 22 C 1.53878 * 109.64363 * 66.31646 * 20 3 2 23 23 C 1.55047 * 106.62423 * 192.96539 * 22 20 3 24 24 S 1.83286 * 102.56644 * 42.43538 * 23 22 20 25 25 O 1.42102 * 109.35553 * 90.18505 * 24 23 22 26 26 O 1.42102 * 109.35429 * 223.25454 * 24 23 22 27 27 C 1.54165 * 109.64738 * 307.17624 * 20 3 2 28 28 H 1.09002 * 109.46697 * 293.08540 * 1 2 3 29 29 H 1.08999 * 109.46924 * 53.08606 * 1 2 3 30 30 H 1.09000 * 109.46780 * 173.08776 * 1 2 3 31 31 H 1.09002 * 109.47519 * 240.00224 * 2 1 3 32 32 H 1.09003 * 109.47382 * 119.99521 * 2 1 3 33 33 H 1.09003 * 109.47262 * 47.03134 * 4 3 2 34 34 H 1.09000 * 109.47762 * 167.03261 * 4 3 2 35 35 H 1.08004 * 119.96424 * 359.97438 * 6 5 4 36 36 H 1.08004 * 120.03503 * 180.27231 * 7 6 5 37 37 H 0.96999 * 120.00582 * 179.97438 * 13 12 10 38 38 H 1.08000 * 120.03325 * 180.02562 * 18 8 7 39 39 H 1.08006 * 119.96197 * 180.02562 * 19 18 8 40 40 H 1.08999 * 110.03397 * 312.25958 * 22 20 3 41 41 H 1.09001 * 110.02790 * 73.67768 * 22 20 3 42 42 H 1.09005 * 110.79126 * 160.70217 * 23 22 20 43 43 H 1.08999 * 110.79304 * 283.97326 * 23 22 20 44 44 H 1.09002 * 110.32032 * 266.65894 * 27 20 3 45 45 H 1.08994 * 110.31917 * 28.85797 * 27 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 2.1288 1.9048 1.3696 5 6 0.7502 2.1711 1.9171 6 6 0.1042 3.3557 1.6138 7 6 -1.1614 3.6002 2.1093 8 6 -1.7808 2.6600 2.9223 9 8 -3.0228 2.8996 3.4152 10 6 -3.5134 2.0072 4.2988 11 1 -2.8895 1.2006 4.6546 12 6 -4.8189 2.1250 4.7507 13 7 -5.5788 3.1077 4.3177 14 14 -5.4989 0.8882 5.9745 15 1 -4.6850 0.9218 7.2161 16 1 -6.9068 1.2333 6.2966 17 1 -5.4451 -0.4733 5.3840 18 6 -1.1271 1.4738 3.2298 19 6 0.1359 1.2326 2.7261 20 6 3.3034 1.4895 -0.7065 21 1 3.7042 2.4966 -0.5912 22 6 3.0982 1.1823 -2.2003 23 6 4.5098 0.9834 -2.8101 24 16 5.3575 -0.0226 -1.5339 25 8 5.1597 -1.4017 -1.8133 26 8 6.6727 0.4780 -1.3366 27 6 4.2993 0.4657 -0.1262 28 1 -0.3633 0.4030 0.9454 29 1 -0.3633 0.6172 -0.8217 30 1 -0.3633 -1.0202 -0.1237 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.6337 1.1708 1.9977 34 1 2.7019 2.8319 1.3619 35 1 0.5884 4.0886 0.9853 36 1 -1.6672 4.5236 1.8685 37 1 -6.4922 3.1899 4.6335 38 1 -1.6063 0.7405 3.8615 39 1 0.6446 0.3101 2.9645 40 1 2.5096 0.2724 -2.3169 41 1 2.5954 2.0176 -2.6876 42 1 4.4506 0.4411 -3.7539 43 1 5.0106 1.9418 -2.9472 44 1 4.9024 0.9260 0.6564 45 1 3.7663 -0.4005 0.2656 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264116482.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:10 Heat of formation + Delta-G solvation = -81.870877 kcal Electronic energy + Delta-G solvation = -27423.238369 eV Core-core repulsion = 23533.238516 eV Total energy + Delta-G solvation = -3889.999853 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.98875 -39.96166 -38.16596 -38.03421 -37.04639 -35.16054 -34.22402 -32.23238 -31.70759 -31.14949 -29.41249 -27.55772 -26.32845 -24.94670 -23.62385 -23.51702 -21.87913 -20.77686 -19.80511 -19.74258 -18.78333 -17.84257 -17.71655 -16.78879 -16.63037 -16.45882 -16.30937 -16.16316 -15.55254 -15.48766 -15.23080 -15.08489 -15.00211 -14.36956 -14.31791 -13.98341 -13.77425 -13.52090 -13.45890 -13.21318 -13.20940 -13.09565 -13.04176 -12.91242 -12.73087 -12.49870 -12.36284 -12.20383 -12.11466 -12.02168 -11.74886 -11.65219 -11.38563 -11.16852 -11.13691 -10.72005 -9.62586 -9.29510 -8.80603 -8.45619 -6.13139 -0.87656 0.66667 0.74775 1.34694 1.45018 1.50549 1.65061 2.18347 2.61265 2.76952 2.96877 3.11766 3.29872 3.53193 3.58232 3.74832 3.76071 3.93920 4.08982 4.10788 4.12939 4.26071 4.28386 4.39173 4.56574 4.62546 4.66659 4.68617 4.75982 4.80937 4.86875 4.88720 4.98052 5.10734 5.15744 5.16661 5.20984 5.21739 5.36139 5.57216 5.64151 5.77592 5.85615 6.05645 6.13908 6.17152 6.31439 6.99574 7.82590 8.77637 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.029139 B = 0.002233 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.683321 B =12537.824755 C =12838.988134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.044 3.956 3 N -0.521 5.521 4 C 0.109 3.891 5 C -0.146 4.146 6 C -0.043 4.043 7 C -0.208 4.208 8 C 0.114 3.886 9 O -0.235 6.235 10 C -0.410 4.410 11 H 0.099 0.901 12 C -0.023 4.023 13 N -0.922 5.922 14 Si 1.016 2.984 15 H -0.258 1.258 16 H -0.272 1.272 17 H -0.258 1.258 18 C -0.245 4.245 19 C -0.054 4.054 20 C 0.091 3.909 21 H 0.129 0.871 22 C -0.118 4.118 23 C -0.558 4.558 24 S 2.388 3.612 25 O -0.984 6.984 26 O -0.983 6.983 27 C -0.628 4.628 28 H 0.058 0.942 29 H 0.050 0.950 30 H 0.053 0.947 31 H 0.086 0.914 32 H 0.047 0.953 33 H 0.054 0.946 34 H 0.101 0.899 35 H 0.147 0.853 36 H 0.107 0.893 37 H 0.272 0.728 38 H 0.112 0.888 39 H 0.131 0.869 40 H 0.089 0.911 41 H 0.118 0.882 42 H 0.154 0.846 43 H 0.163 0.837 44 H 0.157 0.843 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.193 -4.664 -12.639 25.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.083 4.083 3 N -0.244 5.244 4 C -0.017 4.017 5 C -0.147 4.147 6 C -0.061 4.061 7 C -0.228 4.228 8 C 0.064 3.936 9 O -0.142 6.142 10 C -0.486 4.486 11 H 0.116 0.884 12 C -0.221 4.221 13 N -0.560 5.560 14 Si 0.835 3.165 15 H -0.182 1.182 16 H -0.197 1.197 17 H -0.182 1.182 18 C -0.264 4.264 19 C -0.073 4.073 20 C -0.020 4.020 21 H 0.147 0.853 22 C -0.157 4.157 23 C -0.691 4.691 24 S 2.576 3.424 25 O -0.981 6.981 26 O -0.980 6.980 27 C -0.760 4.760 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.105 0.895 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.119 0.881 35 H 0.164 0.836 36 H 0.126 0.874 37 H 0.081 0.919 38 H 0.130 0.870 39 H 0.148 0.852 40 H 0.107 0.893 41 H 0.137 0.863 42 H 0.172 0.828 43 H 0.181 0.819 44 H 0.175 0.825 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 21.311 -4.759 -12.945 25.385 hybrid contribution -1.091 -0.502 1.262 1.742 sum 20.219 -5.261 -11.683 23.938 Atomic orbital electron populations 1.22106 0.95943 1.00933 1.03067 1.22258 0.95591 0.88833 1.01627 1.62071 1.25352 1.20652 1.16279 1.20989 0.92024 1.01106 0.87627 1.19527 0.98258 0.94987 1.01936 1.20796 0.91795 0.97134 0.96407 1.20453 0.97920 0.99660 1.04734 1.19951 0.85792 0.94511 0.93361 1.83948 1.27182 1.48425 1.54660 1.21708 0.97680 1.09258 1.19953 0.88377 1.26543 0.95050 0.99911 1.00566 1.70175 1.08792 1.32315 1.44724 0.84691 0.77565 0.77039 0.77210 1.18245 1.19696 1.18222 1.21162 0.98483 0.98363 1.08408 1.20795 0.92806 0.98535 0.95117 1.22479 0.86930 0.99565 0.92983 0.85285 1.22379 0.94280 1.06356 0.92680 1.30456 1.07753 1.16117 1.14795 1.08819 0.76453 0.76060 0.81031 1.93566 1.87458 1.32777 1.84346 1.93559 1.36773 1.81993 1.85667 1.31211 1.14862 1.11446 1.18530 0.92357 0.93035 0.92755 0.89536 0.93482 0.92777 0.88099 0.83552 0.87438 0.91918 0.87038 0.85153 0.89297 0.86328 0.82817 0.81902 0.82493 0.84130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.81 9.68 71.98 0.70 -3.12 16 2 C 0.04 0.75 4.00 86.30 0.35 1.09 16 3 N -0.52 -7.82 4.34 -871.47 -3.78 -11.61 16 4 C 0.11 1.87 4.68 85.56 0.40 2.27 16 5 C -0.15 -3.89 4.08 -19.83 -0.08 -3.98 16 6 C -0.04 -1.30 9.72 22.25 0.22 -1.08 16 7 C -0.21 -8.49 9.99 22.39 0.22 -8.27 16 8 C 0.11 5.52 6.65 22.58 0.15 5.67 16 9 O -0.24 -14.06 9.76 -22.73 -0.22 -14.29 16 10 C -0.41 -23.74 9.43 67.92 0.64 -23.10 16 11 H 0.10 5.22 5.31 -2.91 -0.02 5.21 16 12 C -0.02 -1.33 5.49 84.83 0.47 -0.86 16 13 N -0.92 -56.59 13.67 21.61 0.30 -56.29 16 14 Si 1.02 42.75 29.55 68.60 2.03 44.78 16 15 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 16 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 17 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 18 C -0.24 -10.20 9.07 22.39 0.20 -10.00 16 19 C -0.05 -1.69 6.76 22.25 0.15 -1.54 16 20 C 0.09 0.78 2.58 45.61 0.12 0.90 16 21 H 0.13 0.59 7.84 -2.39 -0.02 0.57 16 22 C -0.12 -0.79 5.86 31.59 0.19 -0.60 16 23 C -0.56 -2.61 7.31 72.68 0.53 -2.08 16 24 S 2.39 29.04 6.10 -56.49 -0.34 28.69 16 25 O -0.98 -20.55 18.14 -127.47 -2.31 -22.86 16 26 O -0.98 -19.52 18.15 -127.47 -2.31 -21.83 16 27 C -0.63 -5.43 6.00 72.38 0.43 -5.00 16 28 H 0.06 1.68 3.81 -2.39 -0.01 1.67 16 29 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.09 1.15 5.64 -2.39 -0.01 1.13 16 32 H 0.05 0.76 6.88 -2.39 -0.02 0.74 16 33 H 0.05 0.83 7.44 -2.39 -0.02 0.81 16 34 H 0.10 1.32 7.77 -2.39 -0.02 1.30 16 35 H 0.15 3.41 8.06 -2.91 -0.02 3.38 16 36 H 0.11 4.42 8.06 -2.91 -0.02 4.40 16 37 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 38 H 0.11 4.85 5.73 -2.91 -0.02 4.83 16 39 H 0.13 3.34 8.05 -2.91 -0.02 3.31 16 40 H 0.09 0.68 6.12 -2.39 -0.01 0.67 16 41 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.15 0.39 8.14 -2.38 -0.02 0.37 16 43 H 0.16 0.11 8.14 -2.39 -0.02 0.09 16 44 H 0.16 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.14 1.33 5.91 -2.39 -0.01 1.32 16 Total: -1.00 -83.16 366.12 -0.97 -84.13 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: 1.01 Total: 18.97 kcal Atomic # 6 Polarization: -54.37 SS G_CDS: 4.68 Total: -49.69 kcal Atomic # 7 Polarization: -64.41 SS G_CDS: -3.49 Total: -67.90 kcal Atomic # 8 Polarization: -54.13 SS G_CDS: -4.85 Total: -58.98 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Atomic # 16 Polarization: 29.04 SS G_CDS: -0.34 Total: 28.69 kcal Total: -83.16 -0.97 -84.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264116482.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.259 kcal (2) G-P(sol) polarization free energy of solvation -83.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds