Wall clock time and date at job start Sat Apr 11 2020 05:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99922 * 2 1 4 4 C 1.38751 * 120.05336 * 354.85596 * 3 2 1 5 5 C 1.38120 * 119.94263 * 180.02562 * 4 3 2 6 6 C 1.38293 * 120.05648 * 359.97438 * 5 4 3 7 7 C 1.38242 * 120.11070 * 0.02562 * 6 5 4 8 8 C 1.38171 * 120.05789 * 359.97438 * 7 6 5 9 9 C 1.50696 * 120.02987 * 179.97438 * 8 7 6 10 10 C 1.52995 * 115.55068 * 99.37845 * 9 8 7 11 11 N 1.46499 * 109.47093 * 294.33952 * 10 9 8 12 12 S 1.65601 * 119.99796 * 159.46781 * 11 10 9 13 13 O 1.42102 * 104.27732 * 177.88856 * 12 11 10 14 14 O 1.42098 * 104.27749 * 305.74166 * 12 11 10 15 15 C 1.81401 * 104.45127 * 61.81592 * 12 11 10 16 16 C 1.53004 * 109.47104 * 179.97438 * 15 12 11 17 17 C 1.50696 * 109.46905 * 180.02562 * 16 15 12 18 18 H 1.08004 * 120.00394 * 359.97438 * 17 16 15 19 19 C 1.37879 * 119.99997 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99822 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99946 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46775 * 90.00504 * 21 19 17 23 23 H 1.48502 * 109.46938 * 209.99911 * 21 19 17 24 24 H 1.48493 * 109.47319 * 330.00145 * 21 19 17 25 25 C 1.53001 * 117.49921 * 313.67087 * 9 8 7 26 26 C 1.53000 * 60.00001 * 252.51301 * 25 9 8 27 27 H 1.09001 * 109.46955 * 304.80973 * 1 2 3 28 28 H 1.08997 * 109.47200 * 64.81275 * 1 2 3 29 29 H 1.09005 * 109.46730 * 184.81230 * 1 2 3 30 30 H 1.08001 * 120.02879 * 0.04287 * 4 3 2 31 31 H 1.07998 * 119.97402 * 179.72024 * 5 4 3 32 32 H 1.07999 * 119.94705 * 179.97438 * 6 5 4 33 33 H 1.08002 * 119.97315 * 180.02562 * 7 6 5 34 34 H 1.09007 * 109.47523 * 54.34000 * 10 9 8 35 35 H 1.09004 * 109.47269 * 174.33774 * 10 9 8 36 36 H 0.96990 * 120.00312 * 339.46716 * 11 10 9 37 37 H 1.08994 * 109.46688 * 299.99807 * 15 12 11 38 38 H 1.09003 * 109.46889 * 59.99950 * 15 12 11 39 39 H 1.09000 * 109.46789 * 300.00038 * 16 15 12 40 40 H 1.08992 * 109.47199 * 59.99747 * 16 15 12 41 41 H 0.97004 * 120.00087 * 179.97438 * 20 19 17 42 42 H 1.08996 * 117.49763 * 359.97438 * 25 9 8 43 43 H 1.08996 * 117.50194 * 145.02160 * 25 9 8 44 44 H 1.09005 * 117.49526 * 252.51308 * 26 25 9 45 45 H 1.09000 * 117.50552 * 107.49030 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2957 2.3731 -0.1077 5 6 1.9251 3.6025 -0.1080 6 6 3.3019 3.6758 -0.0005 7 6 4.0517 2.5194 0.1069 8 6 3.4268 1.2870 0.1077 9 6 4.2448 0.0268 0.2242 10 6 4.3072 -0.5926 1.6218 11 7 5.0176 0.3145 2.5266 12 16 4.8118 0.1793 4.1642 13 8 5.6764 1.1669 4.7087 14 8 3.4048 0.2558 4.3480 15 6 5.4162 -1.4844 4.5607 16 6 5.2777 -1.7326 6.0641 17 6 5.7803 -3.1145 6.3935 18 1 6.1602 -3.7523 5.6090 19 6 5.7543 -3.5652 7.6963 20 7 5.2913 -2.7888 8.6515 21 14 6.3768 -5.2785 8.1045 22 1 7.8273 -5.2167 8.4168 23 1 5.6393 -5.8058 9.2806 24 1 6.1586 -6.1747 6.9408 25 6 5.4895 -0.0917 -0.6577 26 6 4.2469 -0.9272 -0.9720 27 1 -0.3633 0.5867 0.8438 28 1 -0.3633 0.4373 -0.9299 29 1 -0.3633 -1.0241 0.0862 30 1 0.2204 2.3164 -0.1909 31 1 1.3420 4.5072 -0.1963 32 1 3.7923 4.6381 -0.0014 33 1 5.1268 2.5792 0.1911 34 1 3.2952 -0.7563 1.9922 35 1 4.8350 -1.5451 1.5739 36 1 5.6085 0.9941 2.1666 37 1 4.8301 -2.2235 4.0146 38 1 6.4645 -1.5680 4.2740 39 1 5.8640 -0.9933 6.6098 40 1 4.2296 -1.6487 6.3511 41 1 5.2727 -3.1060 9.5680 42 1 5.7165 0.7418 -1.3224 43 1 6.3532 -0.6108 -0.2422 44 1 4.2932 -1.9960 -0.7633 45 1 3.6566 -0.6433 -1.8433 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264719228.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:19 Heat of formation + Delta-G solvation = -67.849911 kcal Electronic energy + Delta-G solvation = -27606.115516 eV Core-core repulsion = 23716.723657 eV Total energy + Delta-G solvation = -3889.391859 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.61338 -38.35188 -37.12616 -36.47713 -35.35524 -33.98622 -33.86396 -31.13550 -30.97578 -30.22740 -27.42998 -26.42874 -25.57316 -23.28823 -22.93476 -21.77838 -21.62776 -19.92736 -18.79377 -18.12173 -17.38115 -16.81979 -16.28645 -16.09450 -15.90602 -15.62248 -15.38561 -14.97770 -14.61889 -14.54207 -14.44744 -14.20272 -13.83305 -13.34628 -13.15558 -12.79726 -12.57100 -12.47927 -12.12032 -11.88940 -11.71889 -11.65288 -11.53034 -11.49524 -11.41834 -11.24482 -11.06668 -10.93905 -10.91700 -10.53588 -10.37816 -10.35406 -10.15159 -9.74606 -9.41508 -9.03176 -8.93817 -8.48491 -8.26782 -6.10544 -4.15982 0.86544 1.15931 1.30570 3.14834 3.16033 3.27237 3.33331 3.36137 3.59162 3.66896 4.30223 4.35554 4.40568 4.53167 4.67123 4.73899 4.83489 4.87177 4.91340 4.93964 5.00688 5.12914 5.24597 5.28524 5.33612 5.37787 5.50430 5.51486 5.62467 5.66230 5.72706 5.75536 5.83320 5.91635 5.97970 6.07561 6.19957 6.27079 6.39223 6.52328 6.62504 7.20468 7.25920 7.33018 7.39515 7.82482 8.19859 8.87416 9.48565 11.00535 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016383 B = 0.002871 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.634041 B = 9749.657880 C = 9934.214794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.306 6.306 3 C 0.140 3.860 4 C -0.209 4.209 5 C -0.083 4.083 6 C -0.158 4.158 7 C -0.073 4.073 8 C -0.075 4.075 9 C -0.085 4.085 10 C 0.160 3.840 11 N -1.123 6.123 12 S 2.592 3.408 13 O -0.969 6.969 14 O -0.966 6.966 15 C -0.590 4.590 16 C 0.028 3.972 17 C -0.520 4.520 18 H 0.061 0.939 19 C 0.057 3.943 20 N -0.890 5.890 21 Si 0.900 3.100 22 H -0.279 1.279 23 H -0.285 1.285 24 H -0.273 1.273 25 C -0.169 4.169 26 C -0.147 4.147 27 H 0.057 0.943 28 H 0.051 0.949 29 H 0.100 0.900 30 H 0.127 0.873 31 H 0.123 0.877 32 H 0.123 0.877 33 H 0.128 0.872 34 H 0.086 0.914 35 H 0.068 0.932 36 H 0.411 0.589 37 H 0.118 0.882 38 H 0.121 0.879 39 H 0.033 0.967 40 H 0.033 0.967 41 H 0.265 0.735 42 H 0.096 0.904 43 H 0.101 0.899 44 H 0.100 0.900 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.887 8.469 -23.651 25.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.219 6.219 3 C 0.094 3.906 4 C -0.228 4.228 5 C -0.101 4.101 6 C -0.176 4.176 7 C -0.091 4.091 8 C -0.075 4.075 9 C -0.087 4.087 10 C 0.033 3.967 11 N -0.880 5.880 12 S 2.690 3.310 13 O -0.959 6.959 14 O -0.956 6.956 15 C -0.723 4.723 16 C -0.011 4.011 17 C -0.559 4.559 18 H 0.080 0.920 19 C -0.145 4.145 20 N -0.529 5.529 21 Si 0.727 3.273 22 H -0.205 1.205 23 H -0.210 1.210 24 H -0.198 1.198 25 C -0.206 4.206 26 C -0.185 4.185 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.119 0.881 30 H 0.145 0.855 31 H 0.141 0.859 32 H 0.141 0.859 33 H 0.146 0.854 34 H 0.104 0.896 35 H 0.086 0.914 36 H 0.244 0.756 37 H 0.136 0.864 38 H 0.139 0.861 39 H 0.051 0.949 40 H 0.052 0.948 41 H 0.074 0.926 42 H 0.114 0.886 43 H 0.120 0.880 44 H 0.118 0.882 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -6.362 8.838 -22.834 25.298 hybrid contribution 0.497 -0.978 -0.044 1.098 sum -5.865 7.860 -22.878 24.892 Atomic orbital electron populations 1.23075 0.78633 1.04116 1.01109 1.86126 1.21012 1.26420 1.88314 1.18825 0.91607 0.84436 0.95689 1.21218 1.00064 0.92443 1.09095 1.20923 0.94715 0.96903 0.97609 1.21032 0.94014 0.98370 1.04219 1.20853 1.00035 0.90880 0.97311 1.18290 0.89878 0.93732 1.05636 1.19987 1.00440 0.95941 0.92332 1.20710 0.97529 0.91165 0.87262 1.55689 1.60457 1.46484 1.25342 1.05531 0.74942 0.78356 0.72201 1.93545 1.68335 1.57397 1.76669 1.93540 1.30929 1.87028 1.84109 1.30448 1.11421 1.19683 1.10784 1.18958 0.98900 0.99522 0.83746 1.21010 1.42605 0.98922 0.93375 0.92041 1.25072 0.95177 0.97923 0.96347 1.69959 1.45512 1.36553 1.00841 0.86469 0.78879 0.83871 0.78061 1.20481 1.21026 1.19756 1.23129 0.92072 1.03043 1.02371 1.22945 1.00407 0.97309 0.97869 0.92476 0.93004 0.88147 0.85501 0.85949 0.85864 0.85374 0.89566 0.91356 0.75594 0.86359 0.86097 0.94861 0.94842 0.92551 0.88604 0.88042 0.88161 0.88664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.82 101.05 0.99 1.20 16 2 O -0.31 -3.51 9.68 -19.44 -0.19 -3.69 16 3 C 0.14 1.68 6.62 -39.22 -0.26 1.42 16 4 C -0.21 -2.21 9.03 -39.44 -0.36 -2.57 16 5 C -0.08 -0.82 10.04 -39.60 -0.40 -1.22 16 6 C -0.16 -1.58 10.04 -39.56 -0.40 -1.98 16 7 C -0.07 -0.78 9.33 -39.60 -0.37 -1.15 16 8 C -0.07 -0.88 4.94 -104.47 -0.52 -1.40 16 9 C -0.09 -0.92 1.25 -155.66 -0.19 -1.11 16 10 C 0.16 1.99 5.93 -4.05 -0.02 1.96 16 11 N -1.12 -15.46 5.77 -10.61 -0.06 -15.52 16 12 S 2.59 48.12 5.45 -107.50 -0.59 47.54 16 13 O -0.97 -20.73 18.08 -57.54 -1.04 -21.77 16 14 O -0.97 -20.95 17.56 -57.54 -1.01 -21.96 16 15 C -0.59 -11.47 5.93 37.16 0.22 -11.25 16 16 C 0.03 0.72 4.98 -27.88 -0.14 0.58 16 17 C -0.52 -14.48 9.11 -34.44 -0.31 -14.80 16 18 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 20 N -0.89 -26.70 13.29 55.43 0.74 -25.96 16 21 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 24 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 25 C -0.17 -1.44 9.58 -26.73 -0.26 -1.69 16 26 C -0.15 -1.33 9.62 -26.73 -0.26 -1.58 16 27 H 0.06 0.46 7.61 -51.93 -0.40 0.06 16 28 H 0.05 0.32 7.72 -51.93 -0.40 -0.08 16 29 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.13 1.06 6.33 -52.49 -0.33 0.73 16 31 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 32 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 33 H 0.13 1.14 7.94 -52.49 -0.42 0.72 16 34 H 0.09 1.21 7.70 -51.93 -0.40 0.81 16 35 H 0.07 0.72 8.09 -51.93 -0.42 0.30 16 36 H 0.41 4.89 8.66 -34.47 -0.30 4.59 16 37 H 0.12 2.05 8.14 -51.93 -0.42 1.63 16 38 H 0.12 2.11 8.14 -51.92 -0.42 1.68 16 39 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 42 H 0.10 0.74 8.01 -51.93 -0.42 0.32 16 43 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 44 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 391.72 15.07 5.90 5.90 Total: -1.00 -36.47 391.72 -10.48 -46.96 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -6.85 Total: 4.26 kcal Atomic # 6 Polarization: -29.67 SS G_CDS: -2.37 Total: -32.04 kcal Atomic # 7 Polarization: -42.15 SS G_CDS: 0.68 Total: -41.48 kcal Atomic # 8 Polarization: -45.19 SS G_CDS: -2.24 Total: -47.43 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: 48.12 SS G_CDS: -0.59 Total: 47.54 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -36.47 -10.48 -46.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264719228.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.895 kcal (2) G-P(sol) polarization free energy of solvation -36.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds